Mauremys mutica mitochondrion, complete genome.
type: Entry
definition: Mauremys mutica mitochondrion, complete genome.
sequence version: NC_009330.1
sequence date: 2023-04-03
sequence: sequence
division: VRT
label: NC_009330.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
source: mitochondrion Mauremys mutica (Asian Yellow Pond Turtle)
organism: Mauremys mutica
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Geoemydidae; Geoemydinae; Mauremys.
reference: 1
reference: 2
reference: 3
comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The\nreference sequence was derived from DQ453753.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 16609
topology: circular
so has quality: SO_0000988
location: 1..16609
location: region:1-16609:1
RO_0002162: 74926

NC_009330
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

1
title: Mauremys mutica mitochondrial DNA complete genome
author: Nie, L.
author: Song, J.
journal: Unpublished

2
title: Direct Submission
journal: Submitted (03-APR-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Nie, L.
author: Song, J.
journal: Submitted (20-MAR-2006) Anhui Normal University, College of Life Science, East Beijing Road 1, Wuhu, Anhui 241000, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16609:1
position: 16609
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16609:1:source
so part of: sequence
organism: Mauremys mutica
organelle: mitochondrion
mol type: genomic DNA
common: Asian Yellow Pond Turtle

74926
type: Taxonomy
SIO_000068: taxonomy

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 74926
product: tRNA-Phe
anticodon: (pos:31..33,aa:Phe,seq:gaa)
so part of: sequence
location: 1..69
location: region:1-69:1
so has part: feature:1-69:1:region

position:69:1
position: 69
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-69:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 74926
product: s-rRNA
note: 12S ribosomal RNA
so part of: sequence
location: 70..1041
location: region:70-1041:1
so has part: feature:70-1041:1:region

position:70:1
position: 70
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1041:1
position: 1041
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:70-1041:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 74926
product: tRNA-Val
anticodon: (pos:1073..1075,aa:Val,seq:tac)
so part of: sequence
location: 1042..1111
location: region:1042-1111:1
so has part: feature:1042-1111:1:region

position:1042:1
position: 1042
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1111:1
position: 1111
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1042-1111:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 74926
product: l-rRNA
note: 16S ribosomal RNA
so part of: sequence
location: 1112..2707
location: region:1112-2707:1
so has part: feature:1112-2707:1:region

position:1112:1
position: 1112
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2707:1
position: 2707
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1112-2707:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 74926
product: tRNA-Leu
anticodon: (pos:2744..2746,aa:Leu,seq:taa)
codon recognized: UUR
so part of: sequence
location: 2707..2782
location: region:2707-2782:1
so has part: feature:2707-2782:1:region

position:2782:1
position: 2782
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2707-2782:1:region

ND1
type: Gene
subclass of: SO_0000704
RO_0002162: 74926
gene: ND1
so part of: sequence
location: 2783..3754
location: region:2783-3754:1
so has part: feature:2783-3754:1:exon
subclass of: SO_0000010

4962493
type: Gene
SIO_000068: ncbigene

position:2783:1
position: 2783
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3754:1
position: 3754
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2783-3754:1:exon

ND1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 74926
gene: ND1
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 1
translation: MKLLLTNLMSPLMYMIPILIAVAFFTLIERKVLGYMQLRKGPNIVGPQGLLQPVADGVKLFIKEPIYPLNSSITLFTISPIMALTLALSIWLPLPMPFPLTDLNLGLLFLIAISSFMAYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSMILFSGGFNMQTFTTVQEPMYLMFSSWPLMTMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILMMNTLTTILFLNPAHINNIPELFTLSLISKTMLLSAGFLWIRTSYPRFRYDQLMHLLWKNFLPITLALCFWHMSMPITLSGLPPMP
SIO_010081: ND1
subclass of: SO_0000673
so part of: ND1
location: 2783..3754
location: region:2783-3754:1
so has part: feature:2783-3754:1:exon

YP_001127578.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2783-3754:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 74926
product: tRNA-Ile
anticodon: (pos:3784..3786,aa:Ile,seq:gat)
so part of: sequence
location: 3754..3823
location: region:3754-3823:1
so has part: feature:3754-3823:1:region

position:3823:1
position: 3823
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3754-3823:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 74926
product: tRNA-Gln
anticodon: (pos:complement(3859..3861),aa:Gln,seq:ttg)
so part of: sequence
location: complement(3823..3893)
location: region:3823-3893:-1
so has part: feature:3823-3893:-1:region

position:3823:-1
position: 3823
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3893:-1
position: 3893
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3823-3893:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 74926
product: tRNA-Met
anticodon: (pos:3923..3925,aa:Met,seq:cat)
so part of: sequence
location: 3893..3961
location: region:3893-3961:1
so has part: feature:3893-3961:1:region

position:3893:1
position: 3893
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3961:1
position: 3961
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3893-3961:1:region

ND2
type: Gene
subclass of: SO_0000704
RO_0002162: 74926
gene: ND2
so part of: sequence
location: 3962..5000
location: region:3962-5000:1
so has part: feature:3962-5000:1:exon
subclass of: SO_0000010

4962492
type: Gene
SIO_000068: ncbigene

position:3962:1
position: 3962
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5000:1
position: 5000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3962-5000:1:exon

ND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 74926
gene: ND2
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:5000,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 2
translation: MNPHASTIIITSLIMGPLLTISSDHWVLAWMGLEISTLAITPLIAKQHHPRAIEAATKYFLTQAAASTLILASSIINAWQTSQWDITQMSVEGGGVILTAALAIKLGLAPFHFWLPEVLQGSNTMTAMMLTTWQKGAPMSVMVMAAQCMNTSLMVTLGLTSIIIGGWGGLNQTQLRKIMAFSSIAHLGWMVTILTLSPKLMMLTFYTYAIMTSTMFLMIKLLETNKVSMMMTSWTKLPMLNATMMLILMSLAGLPPLTGFMPKWLIIQELSKQHMCFTATTMIIMSMLSLFFYLRTSYQATITLSPNSTNSSQQWRHKPNQTYYLTPMIMLSTTLLPTVPTLLAII
SIO_010081: ND2
subclass of: SO_0000673
so part of: ND2
location: 3962..5000
location: region:3962-5000:1
so has part: feature:3962-5000:1:exon

YP_001127579.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3962-5000:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 74926
product: tRNA-Trp
anticodon: (pos:5040..5042,aa:Trp,seq:tca)
so part of: sequence
location: 5001..5078
location: region:5001-5078:1
so has part: feature:5001-5078:1:region

position:5001:1
position: 5001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5078:1
position: 5078
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5001-5078:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 74926
product: tRNA-Ala
anticodon: (pos:complement(5116..5118),aa:Ala,seq:tgc)
so part of: sequence
location: complement(5080..5148)
location: region:5080-5148:-1
so has part: feature:5080-5148:-1:region

position:5080:-1
position: 5080
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5148:-1
position: 5148
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5080-5148:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 74926
product: tRNA-Asn
anticodon: (pos:complement(5187..5189),aa:Asn,seq:gtt)
so part of: sequence
location: complement(5150..5222)
location: region:5150-5222:-1
so has part: feature:5150-5222:-1:region

position:5150:-1
position: 5150
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5222:-1
position: 5222
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5150-5222:-1:region

rep_origin
type: Replication Origin
subclass of: SO_0000296
RO_0002162: 74926
note: origin for replicating the light strand
so part of: sequence
location: 5224..5251
location: region:5224-5251:1
so has part: feature:5224-5251:1:region

position:5224:1
position: 5224
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5251:1
position: 5251
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5224-5251:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 74926
product: tRNA-Cys
anticodon: (pos:complement(5284..5286),aa:Cys,seq:gca)
so part of: sequence
location: complement(5249..5314)
location: region:5249-5314:-1
so has part: feature:5249-5314:-1:region

position:5249:-1
position: 5249
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5314:-1
position: 5314
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5249-5314:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 74926
product: tRNA-Tyr
anticodon: (pos:complement(5351..5353),aa:Tyr,seq:gta)
so part of: sequence
location: complement(5315..5385)
location: region:5315-5385:-1
so has part: feature:5315-5385:-1:region

position:5315:-1
position: 5315
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5385:-1
position: 5385
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5315-5385:-1:region

COX1
type: Gene
subclass of: SO_0000704
RO_0002162: 74926
gene: COX1
so part of: sequence
location: 5387..6934
location: region:5387-6934:1
so has part: feature:5387-6934:1:exon
subclass of: SO_0000010

4962491
type: Gene
SIO_000068: ncbigene

position:5387:1
position: 5387
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6934:1
position: 6934
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5387-6934:1:exon

COX1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 74926
gene: COX1
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit I
translation: MFLTRWFFSTNHKDIGTLYLIFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPVMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSLLLLLASSGIEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTAINMKSPAMSQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPSGGGDPILYQHLFWFFGHPEVYILILPGFGMISHVVTYYAGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGMIKWDAAMLWALGFIFLFTIGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMAGFTHWFPLFTGYSLHQTWAKIHFGVMFAGVNITFFPQHFLGLAGMPRRYSDYPDAYTLWNSISSIGSLISLMAVIMMMFIIWEAFSSKRKVMTVELTTTNVEWLHGCPPPYHTYEEPAHVQTQE
SIO_010081: COX1
subclass of: SO_0000673
so part of: COX1
location: 5387..6934
location: region:5387-6934:1
so has part: feature:5387-6934:1:exon

YP_001127580.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5387-6934:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 74926
product: tRNA-Ser
anticodon: (pos:complement(6962..6964),aa:Ser,seq:tga)
codon recognized: UCN
so part of: sequence
location: complement(6926..6996)
location: region:6926-6996:-1
so has part: feature:6926-6996:-1:region

position:6926:-1
position: 6926
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6996:-1
position: 6996
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6926-6996:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 74926
product: tRNA-Asp
anticodon: (pos:7030..7032,aa:Asp,seq:gtc)
so part of: sequence
location: 6999..7068
location: region:6999-7068:1
so has part: feature:6999-7068:1:region

position:6999:1
position: 6999
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7068:1
position: 7068
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6999-7068:1:region

COX2
type: Gene
subclass of: SO_0000704
RO_0002162: 74926
gene: COX2
so part of: sequence
location: 7069..7758
location: region:7069-7758:1
so has part: feature:7069-7758:1:exon
subclass of: SO_0000010

4962490
type: Gene
SIO_000068: ncbigene

position:7069:1
position: 7069
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7758:1
position: 7758
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7069-7758:1:exon

COX2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 74926
gene: COX2
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit II
translation: MAHPFQLGFQDAMSPIMEELHHFHDHTLMIVFLISTLVLYIITLMMTTKLTYTNTMNAQEVEMIWTVLPAIVLITIALPSLRVLYLMDEINNPHLTIKAMGHQWYWTYEYTDYKNLEFDSYMIPTQSLPNGHFRLLEVDHRVVMPMESPIRMLISAEDVLHSWAIPSLGVKADAVPGRLNQSTFIMARPGVFYGQCSEICGANHSFMPIVVESVPLKHFENWSSLMLYS
SIO_010081: COX2
subclass of: SO_0000673
so part of: COX2
location: 7069..7758
location: region:7069-7758:1
so has part: feature:7069-7758:1:exon

YP_001127581.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7069-7758:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 74926
product: tRNA-Lys
anticodon: (pos:7793..7795,aa:Lys,seq:ttt)
so part of: sequence
location: 7760..7832
location: region:7760-7832:1
so has part: feature:7760-7832:1:region

position:7760:1
position: 7760
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7832:1
position: 7832
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7760-7832:1:region

ATP8
type: Gene
subclass of: SO_0000704
RO_0002162: 74926
gene: ATP8
so part of: sequence
location: 7834..8001
location: region:7834-8001:1
so has part: feature:7834-8001:1:exon
subclass of: SO_0000010

4962489
type: Gene
SIO_000068: ncbigene

position:7834:1
position: 7834
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8001:1
position: 8001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7834-8001:1:exon

ATP8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 74926
gene: ATP8
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 8
translation: MPQLNLDQWFLILSSTWLVYTTILQPKISSYLSTNNPANKDNKVTNTNPWTWPWT
SIO_010081: ATP8
subclass of: SO_0000673
so part of: ATP8
location: 7834..8001
location: region:7834-8001:1
so has part: feature:7834-8001:1:exon

YP_001127582.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7834-8001:1:exon

ATP6
type: Gene
subclass of: SO_0000704
RO_0002162: 74926
gene: ATP6
so part of: sequence
location: 7992..8675
location: region:7992-8675:1
so has part: feature:7992-8675:1:exon
subclass of: SO_0000010

4962488
type: Gene
SIO_000068: ncbigene

position:7992:1
position: 7992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8675:1
position: 8675
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7992-8675:1:exon

ATP6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 74926
gene: ATP6
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 6
translation: MNLTFFDQFMSPQILGVPLIILALLMPSIIFPTPNNRWLANRLSTLQVWTINLFTKQLMLPINKTGHKWALILTSLLAMLLMTNLLGLLPYAFTPTTQLSMNMGLAIPMWLATVLTGLRNQLTTSLGHLLPEGTPAPLIPILIIIETISLFIRPLALGVRLTANLTAGHLLIQLISTAMLALLPTMTTLSILTGIILLLLMILELAVAMIQAYVFVLLLCLYLQENI
SIO_010081: ATP6
subclass of: SO_0000673
so part of: ATP6
location: 7992..8675
location: region:7992-8675:1
so has part: feature:7992-8675:1:exon

YP_001127583.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7992-8675:1:exon

COX3
type: Gene
subclass of: SO_0000704
RO_0002162: 74926
gene: COX3
so part of: sequence
location: 8675..9459
location: region:8675-9459:1
so has part: feature:8675-9459:1:exon
subclass of: SO_0000010

4962487
type: Gene
SIO_000068: ncbigene

position:9459:1
position: 9459
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8675-9459:1:exon

COX3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 74926
gene: COX3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:9458..9459,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit III
translation: MAHQTHAYHMVDPSPWPLTGAAAALLMTSGLAMWFHYNSMLLMILGLSIMLLTMLQWWRDIVREGTFQGHHTPPVQKGLRYGMILFITSEVFFFIGFFWAFYHSSLAPTPDLGGCWPPTGITPLNPFEVPLLNTAVLLASGVTITWAHHSLMEANRNQTIQALSLTILLGLYFTALQAMEYYEAPFTIADGVYGSTFFVATGFHGLHVIIGSTFLIVCLLRQIKHHFTSTHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS
SIO_010081: COX3
subclass of: SO_0000673
so part of: COX3
location: 8675..9459
location: region:8675-9459:1
so has part: feature:8675-9459:1:exon

YP_001127584.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8675-9459:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 74926
product: tRNA-Gly
anticodon: (pos:9488..9490,aa:Gly,seq:tcc)
so part of: sequence
location: 9459..9526
location: region:9459-9526:1
so has part: feature:9459-9526:1:region

position:9526:1
position: 9526
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9459-9526:1:region

ND3
type: Gene
subclass of: SO_0000704
RO_0002162: 74926
gene: ND3
so part of: sequence
location: 9527..9876
location: region:9527-9876:1
so has part: feature:9527-9876:1:exon
subclass of: SO_0000010

4962486
type: Gene
SIO_000068: ncbigene

position:9527:1
position: 9527
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9876:1
position: 9876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9527-9876:1:exon

ND3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 74926
gene: ND3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA; frameshift mechanism unknown (Mindell et al., 1998, Mol. Biol. Evol., 15:1568-1571)
codon start: 1
transl except: (pos:9876,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 3
translation: MNLMILISIIYLALPTILTLLNYWFTLTKPDNEKLSPYECGFDPLKTTRPPFSIRFFLVAILFLLFDLEIALLLPLPWAIQLPYPTYTFTWAFIIMSLLTLGLLYEWIQGGLEWAE
SIO_010081: ND3
subclass of: SO_0000673
so part of: ND3
location: join(9527..9697,9699..9876)
location: region:9527-9876:1
so has part: feature:9527-9697:1:exon
so has part: feature:9699-9876:1:exon

YP_001127585.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9527-9697:1:exon

position:9697:1
position: 9697
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:9699-9876:1:exon

position:9699:1
position: 9699
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 74926
product: tRNA-Arg
anticodon: (pos:9908..9910,aa:Arg,seq:tcg)
so part of: sequence
location: 9877..9947
location: region:9877-9947:1
so has part: feature:9877-9947:1:region

position:9877:1
position: 9877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9947:1
position: 9947
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9877-9947:1:region

ND4L
type: Gene
subclass of: SO_0000704
RO_0002162: 74926
gene: ND4L
so part of: sequence
location: 9947..10246
location: region:9947-10246:1
so has part: feature:9947-10246:1:exon
subclass of: SO_0000010

4962485
type: Gene
SIO_000068: ncbigene

position:10246:1
position: 10246
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9947-10246:1:exon

ND4L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 74926
gene: ND4L
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 4L
translation: MITAMHFTPFCAFIISTLGFLLHQAHLIPTLLCLEGMMLSLFMALSMWSIQLEVSSFMLAPMLMLTFSACEAGMGLSLLVASSRTHGSSHLQNLNLLQC
SIO_010081: ND4L
subclass of: SO_0000673
so part of: ND4L
location: 9947..10246
location: region:9947-10246:1
so has part: feature:9947-10246:1:exon

YP_001127586.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9947-10246:1:exon

ND4
type: Gene
subclass of: SO_0000704
RO_0002162: 74926
gene: ND4
so part of: sequence
location: 10240..11616
location: region:10240-11616:1
so has part: feature:10240-11616:1:exon
subclass of: SO_0000010

4962484
type: Gene
SIO_000068: ncbigene

position:10240:1
position: 10240
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11616:1
position: 11616
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10240-11616:1:exon

ND4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 74926
gene: ND4
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 4
translation: MLKMMIPMILLLPTTMLCKSKQLWPTTLIHSFWIALLSLQWFKPSTELTIFSNSYLGVDQISAPFLILSCWLTPMMIMAGQNNLITEPTSRKRTFIFITILLQISLILAFSTTELIMFFIAFETTLLPTLVIITRWGGQMERLNAGTYFLFYTLIGSLPLLVALLATQTYSGTLSICTLQLSTYPNSMNPWTHTMWWLALFTAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGGYGIIRMTMTLAPPLKMLSYPFMMLALWGVIMTGFICLRQTDLKSLIAYSSVGHMGLVIAATLTRTEWACTGAITLMIAHGLTSSMLFCLANTNYERTNSRTLLLARNMQLLLPLMGLWWFSASLTNMALPPTINLMGELTIIASLFNWSNTTILMTGLGTLLTAAYTLYMLITTQWGESPSHTKTIPPTHTREHLLMMLHMVPMALLMVKPELIQGA
SIO_010081: ND4
subclass of: SO_0000673
so part of: ND4
location: 10240..11616
location: region:10240-11616:1
so has part: feature:10240-11616:1:exon

YP_001127587.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10240-11616:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 74926
product: tRNA-His
anticodon: (pos:11660..11662,aa:His,seq:gtg)
so part of: sequence
location: 11629..11698
location: region:11629-11698:1
so has part: feature:11629-11698:1:region

position:11629:1
position: 11629
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11698:1
position: 11698
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11629-11698:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 74926
product: tRNA-Ser
codon recognized: AGY
so part of: sequence
location: 11699..11765
location: region:11699-11765:1
so has part: feature:11699-11765:1:region

position:11699:1
position: 11699
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11765:1
position: 11765
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11699-11765:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 74926
product: tRNA-Leu
anticodon: (pos:11797..11799,aa:Leu,seq:tag)
codon recognized: CUN
so part of: sequence
location: 11765..11836
location: region:11765-11836:1
so has part: feature:11765-11836:1:region

position:11836:1
position: 11836
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11765-11836:1:region

ND5
type: Gene
subclass of: SO_0000704
RO_0002162: 74926
gene: ND5
so part of: sequence
location: 11837..13642
location: region:11837-13642:1
so has part: feature:11837-13642:1:exon
subclass of: SO_0000010

4962483
type: Gene
SIO_000068: ncbigene

position:11837:1
position: 11837
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13642:1
position: 13642
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11837-13642:1:exon

ND5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 74926
gene: ND5
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 5
translation: MTSLMMNSTFLLTLLMLTLPLMTPMHPPKEWLVTKTKTTVKTAFFTALIPLDYFFPTNIESIITNLHWSNMFTFNINMSFKFDQYSIMFVPIALYVTWSILEFTHWYMSADPHITKFFKYLLTFLVVMMILVTANNMLQLFIGWEGVGIMSFLLIGWWRGRVEANLSALQAILYNRTGDIGLILTMSWLAMNMNTWELQQIFANTNPIPLLPLLGLILAATGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGIFLLIRIHPILTTSNLALSICLCLGATTTLFTAFCALTQNDIKKIIAFSTSSQLGLMMVTIGLNQPQLAFLHISMHAFFKAMLFLCSGSIIHNLNDEQDIRKMGGLHKPLPITSSCLTIGNMALTGMPFMTGFYSKDIIIEVMNTSYLNAWALLLTLIATSFTTIYSLRITMFVQTGQPRYSSIILLNENNPTVINPITRLAMGSIIAGLIISLNTMPLNTPPTTMPTYMKIAALTMTTLGLLLALELISMTNKMPTKPSNIHNFSNSLAYFNTLVHRLFPTINLKFSQNTATHLIDLSWYENIGPKGLAKSQITPITLTSSQKGLIKIYMTSFILSIMLLFIMT
SIO_010081: ND5
subclass of: SO_0000673
so part of: ND5
location: 11837..13642
location: region:11837-13642:1
so has part: feature:11837-13642:1:exon

YP_001127588.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11837-13642:1:exon

ND6
type: Gene
subclass of: SO_0000704
RO_0002162: 74926
gene: ND6
so part of: sequence
location: complement(13638..14162)
location: region:13638-14162:-1
so has part: feature:13638-14162:-1:exon
subclass of: SO_0000010

4962482
type: Gene
SIO_000068: ncbigene

position:13638:-1
position: 13638
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14162:-1
position: 14162
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13638-14162:-1:exon

ND6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 74926
gene: ND6
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 6
translation: MMYFMFLFGFCFVFWMVGVSCNPSPYYGVVSLIFGALSGCGVLVGMGGSFVSLVLFLIYLGGMLVIFAYSSALMAEPFPVGWLSLEGVFYGLYYLFIIVVFMKMSCHLWSIEGIGVDTVDAGGLYVVRLDFSGISWLYCFGSGLLLVAGWGLLLTLFVVLELVRGLSRGVLRAI
SIO_010081: ND6
subclass of: SO_0000673
so part of: ND6
location: complement(13638..14162)
location: region:13638-14162:-1
so has part: feature:13638-14162:-1:exon

YP_001127589.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13638-14162:-1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 74926
product: tRNA-Glu
anticodon: (pos:complement(14199..14201),aa:Glu,seq:ttc)
so part of: sequence
location: complement(14163..14230)
location: region:14163-14230:-1
so has part: feature:14163-14230:-1:region

position:14163:-1
position: 14163
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14230:-1
position: 14230
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14163-14230:-1:region

CYTB
type: Gene
subclass of: SO_0000704
RO_0002162: 74926
gene: CYTB
so part of: sequence
location: 14234..15380
location: region:14234-15380:1
so has part: feature:14234-15380:1:exon
subclass of: SO_0000010

4962481
type: Gene
SIO_000068: ncbigene

position:14234:1
position: 14234
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15380:1
position: 15380
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14234-15380:1:exon

CYTB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 74926
gene: CYTB
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:15380,aa:TERM)
transl table: 2
product: cytochrome b
translation: MTTNLRKTHPMMKIINNSFIDLPSPSNISALWNFGSLLGTCLILQIITGIFLAMHYSPDISLAFSSVAHITRDVQYGWLIRNIHANGASIFFMCLYLHIGRGLYYGSYLYKETWNTGIILLFLTMATAFVGYVLPWGQMSFWGATVITNLLSATPYIGNTLVQWIWGGFSVDNATLTRFFTFHFLLPFTIAGLAAVHLLFLHETGSNNPTGLNSNADKIPFHPYFSYKDLLGLISMLTLLLILALFFPNLLGDPDNFTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLFMMPTLHTSKQRTASFRPLTQTLFWCLTANLLVLTWIGGQPVENPFITIGQTASILYFMIVLTLMPLMGLIENKMLNQKY
SIO_010081: CYTB
subclass of: SO_0000673
so part of: CYTB
location: 14234..15380
location: region:14234-15380:1
so has part: feature:14234-15380:1:exon

YP_001127590.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14234-15380:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 74926
product: tRNA-Thr
anticodon: (pos:15429..15431,aa:Thr,seq:tgt)
so part of: sequence
location: 15396..15467
location: region:15396-15467:1
so has part: feature:15396-15467:1:region

position:15396:1
position: 15396
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15467:1
position: 15467
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15396-15467:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 74926
product: tRNA-Pro
anticodon: (pos:complement(15505..15507),aa:Pro,seq:tgg)
so part of: sequence
location: complement(15469..15538)
location: region:15469-15538:-1
so has part: feature:15469-15538:-1:region

position:15469:-1
position: 15469
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15538:-1
position: 15538
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15469-15538:-1:region

D-loop
type: Displacement Loop
subclass of: SO_0000297
RO_0002162: 74926
note: control region
so part of: sequence
location: 15539..16609
location: region:15539-16609:1
so has part: feature:15539-16609:1:region

position:15539:1
position: 15539
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15539-16609:1:region