Pasteurella multocida strain FDAARGOS_218 plasmid unnamed1, complete sequence.
type: Entry
definition: Pasteurella multocida strain FDAARGOS_218 plasmid unnamed1, complete sequence.
sequence version: NZ_CP020404.1
sequence date: 2022-12-29
sequence: sequence
division: CON
label: NZ_CP020404.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN04875555
keyword: RefSeq
source: Pasteurella multocida
organism: Pasteurella multocida
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Pasteurella.
reference: 1
reference: 2
reference: 3
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP020404.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 3\nGenome Coverage :: 671.979x\nSequencing Technology :: PacBio; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/29/2022 02:51:32\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 2,197\nCDSs (total) :: 2,118\nGenes (coding) :: 2,111\nCDSs (with protein) :: 2,111\nGenes (RNA) :: 79\nrRNAs :: 7, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 6, 6 (5S, 16S, 23S)\ntRNAs :: 56\nncRNAs :: 4\nPseudo Genes (total) :: 7\nCDSs (without protein) :: 7\nPseudo Genes (ambiguous residues) :: 0 of 7\nPseudo Genes (frameshifted) :: 5 of 7\nPseudo Genes (incomplete) :: 2 of 7\nPseudo Genes (internal stop) :: 1 of 7\nPseudo Genes (multiple problems) :: 1 of 7\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 3742
topology: circular
so has quality: SO_0000988
location: 1..3742
location: region:1-3742:1
RO_0002162: 747

NZ_CP020404
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN04875555
type: BioSample
SIO_000068: biosample

1
title: FDA dAtabase for Regulatory Grade micrObial Sequences (FDA-ARGOS): Supporting development and validation of Infectious Disease Dx tests
author: Minogue, T.
author: Wolcott, M.
author: Wasieloski, L.
author: Aguilar, W.
author: Moore, D.
author: Tallon, L.J.
author: Sadzewicz, L.
author: Sengamalay, N.
author: Ott, S.
author: Godinez, A.
author: Nagaraj, S.
author: Vyas, G.
author: Aluvathingal, J.
author: Nadendla, S.
author: Sichtig, H.
journal: Unpublished

2
title: Direct Submission
author: Minogue, T.
author: Wolcott, M.
author: Wasieloski, L.
author: Aguilar, W.
author: Moore, D.
author: Tallon, L.J.
author: Sadzewicz, L.
author: Sengamalay, N.
author: Ott, S.
author: Godinez, A.
author: Nagaraj, S.
author: Vyas, G.
author: Aluvathingal, J.
author: Nadendla, S.
author: Sichtig, H.
journal: Submitted (09-DEC-2017) Center for Devices and Radiological Health, US Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993-0002, USA
comments: Sequence update by submitter

3
title: Direct Submission
author: Minogue, T.
author: Wolcott, M.
author: Wasieloski, L.
author: Aguilar, W.
author: Moore, D.
author: Tallon, L.
author: Sadzewicz, L.
author: Sengamalay, N.
author: Ott, S.
author: Godinez, A.
author: Nagaraj, S.
author: Nadendla, S.
author: Geyer, C.
author: Sichtig, H.
journal: Submitted (23-MAR-2017) Institute for Genome Sciences, University of Maryland, 801 W.Baltimore Street, Baltimore, MD 21201, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3742:1
position: 3742
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-3742:1:source
so part of: sequence
organism: Pasteurella multocida
mol type: genomic DNA
strain: FDAARGOS_218
serotype: Heddleston Type 3; Serotype A:3
isolation source: Turkey
host: Environment
culture collection: FDA:FDAARGOS_218
plasmid: unnamed1
country: USA: MD
collected by: USAMRIID

747
type: Taxonomy
SIO_000068: taxonomy

A6J57_RS00005
type: Gene
subclass of: SO_0000704
RO_0002162: 747
locus tag: A6J57_RS00005
old locus tag: A6J57_00005
so part of: sequence
location: complement(join(3697..3742,1..230))
location: region:1-3742:-1
so has part: feature:1-230:-1:exon
so has part: feature:3697-3742:-1:exon
subclass of: SO_0000010

77206051
type: Gene
SIO_000068: ncbigene

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3742:-1
position: 3742
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-230:-1:exon

position:230:-1
position: 230
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3697-3742:-1:exon

position:3697:-1
position: 3697
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

A6J57_RS00005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 747
locus tag: A6J57_RS00005
old locus tag: A6J57_00005
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKWQALNANLLDFMALLSDDALTFFEKSLDKYDIVLSPFTIEINSYVAIHCLIDGKTATVLSFNYGRYAYSNKGISARGMRVYSSARIQIL
SIO_010081: A6J57_RS00005
subclass of: SO_0000673
so part of: A6J57_RS00005
location: complement(join(3697..3742,1..230))
location: region:1-3742:-1
so has part: feature:1-230:-1:exon
so has part: feature:3697-3742:-1:exon

WP_080527691.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-230:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3697-3742:-1:exon

A6J57_RS00010
type: Gene
subclass of: SO_0000704
RO_0002162: 747
locus tag: A6J57_RS00010
old locus tag: A6J57_00010
so part of: sequence
location: complement(211..396)
location: region:211-396:-1
so has part: feature:211-396:-1:exon
subclass of: SO_0000010

77206052
type: Gene
SIO_000068: ncbigene

position:211:-1
position: 211
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:396:-1
position: 396
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:211-396:-1:exon

A6J57_RS00010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 747
locus tag: A6J57_RS00010
old locus tag: A6J57_00010
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018345641.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKLTKAQKEELLAVYLKAKEENTLIPTSKQAIKARANQKRAAFVQNKKIIDEVFYSEMASA
SIO_010081: A6J57_RS00010
subclass of: SO_0000673
so part of: A6J57_RS00010
location: complement(211..396)
location: region:211-396:-1
so has part: feature:211-396:-1:exon

WP_005757207.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:211-396:-1:exon

A6J57_RS00015
type: Gene
subclass of: SO_0000704
RO_0002162: 747
locus tag: A6J57_RS00015
old locus tag: A6J57_00015
so part of: sequence
location: 1898..2074
location: region:1898-2074:1
so has part: feature:1898-2074:1:exon
subclass of: SO_0000010

77206053
type: Gene
SIO_000068: ncbigene

position:1898:1
position: 1898
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2074:1
position: 2074
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1898-2074:1:exon

A6J57_RS00015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 747
locus tag: A6J57_RS00015
old locus tag: A6J57_00015
inference: COORDINATES: protein motif:HMM:NF016710.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MbeB family mobilization protein
translation: MQNAIKQHEQNLIQLLQHAENNLAENIQIEQAKLIKNTVRMYRLPNLIALTILALIAI
SIO_010081: A6J57_RS00015
subclass of: SO_0000673
so part of: A6J57_RS00015
location: 1898..2074
location: region:1898-2074:1
so has part: feature:1898-2074:1:exon

WP_230455693.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1898-2074:1:exon

A6J57_RS00020
type: Gene
subclass of: SO_0000704
RO_0002162: 747
locus tag: A6J57_RS00020
old locus tag: A6J57_00020
so part of: sequence
location: complement(2127..3023)
location: region:2127-3023:-1
so has part: feature:2127-3023:-1:exon
subclass of: SO_0000010

77206054
type: Gene
SIO_000068: ncbigene

position:2127:-1
position: 2127
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3023:-1
position: 3023
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2127-3023:-1:exon

A6J57_RS00020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 747
locus tag: A6J57_RS00020
old locus tag: A6J57_00020
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014702287.1
GO component: GO:0016020 - membrane [Evidence IEA]
GO function: GO:0008324 - cation transmembrane transporter activity [Evidence IEA]
GO process: GO:0006812 - cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cation transporter
translation: MSKSCGGACGGDATSAADIDIQASSEALGRWVSVYAVPKMDCPSEERMIRLALNGFEEIRALSFDLSNRRLKVVHDGEVEPVTSKLKTLGLGASLQETVAANSETIKAAEFSAASAKQESGTLRWLLGINALLFVVEMTAGLIAQSTGLIGESLDNFSDAAVYGLALYAVGHSVKMQVRAAHLAGVLQLILAVGVLVEVVRRFVFGSEPESLVMMAIAFVALIANTSCLLLISKHREGGAHMKASWIFSANDVVINLGGITAGALVAWTGSNYPDLIIGTIAGGIVLNGARRILAMKG
SIO_010081: A6J57_RS00020
subclass of: SO_0000673
so part of: A6J57_RS00020
location: complement(2127..3023)
location: region:2127-3023:-1
so has part: feature:2127-3023:-1:exon

WP_005757203.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2127-3023:-1:exon