Rahnella aquatilis CIP 78.65 = ATCC 33071 plasmid pRahaq201, complete sequence.
Rahnella aquatilis CIP 78.65 = ATCC 33071
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Rahnella.
Complete genome sequence of Rahnella aquatilis CIP 78.65
Submitted (04-JAN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP003245.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4089211\nSource DNA and organism available from Robert Martinez\n(rmartinez@bama.ua.edu)\nContacts: Robert Martinez (rmartinez@bama.ua.edu)\n Tanja Woyke (microbe@cuba.jgi-psf.org)\nAnnotation done by JGI-ORNL and JGI-PGF\nFinishing done by JGI-LANL\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. it is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##MIGS-Data-START##\ninvestigation_type :: bacteria_archaea\nproject_name :: Rahnella aquatilis CIP 78.65\ncollection_date :: Missing\nlat_lon :: Missing\ndepth :: Missing\nalt_elev :: Missing\ncountry :: Missing\nenvironment :: Host\nnum_replicons :: 4\nref_biomaterial :: Missing\nbiotic_relationship :: Missing\ntrophic_level :: Missing\nrel_to_oxygen :: Facultative\nisol_growth_condt :: Missing\nsequencing_meth :: WGS\nassembly :: Newbler v. 2.3 (pre-release)\nfinishing_strategy :: Finished\nGOLD Stamp ID :: Gi06369\nType Strain :: Yes\nFunding Program :: DOE-CSP 2010\nGene Calling Method :: Prodigal 1.4, GenePRIMP\nIsolation Site :: drinking water\nHost Name :: Water, humans\nCell Shape :: Rod-shaped\nTemperature Range :: Mesophile\nGram Staining :: Gram-\n##MIGS-Data-END##\n\n##Genome-Assembly-Data-START##\nFinishing Goal :: Finished\nCurrent Finishing Status :: Finished\nAssembly Method :: Newbler v. 2.3\nGenome Coverage :: 30x\nSequencing Technology :: 454/Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/22/2023 14:19:21\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,999\nCDSs (total) :: 4,891\nGenes (coding) :: 4,827\nCDSs (with protein) :: 4,827\nGenes (RNA) :: 108\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 76\nncRNAs :: 10\nPseudo Genes (total) :: 64\nCDSs (without protein) :: 64\nPseudo Genes (ambiguous residues) :: 0 of 64\nPseudo Genes (frameshifted) :: 28 of 64\nPseudo Genes (incomplete) :: 44 of 64\nPseudo Genes (internal stop) :: 6 of 64\nPseudo Genes (multiple problems) :: 14 of 64\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_012228902.1
GO:0033104 - type VI protein secretion system complex [Evidence IEA]
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO:0033103 - protein secretion by the type VI secretion system [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015741072.1
type VI secretion system Vgr family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014341598.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF021611.2
COORDINATES: similar to AA sequence:RefSeq:WP_014341594.1
COORDINATES: similar to AA sequence:RefSeq:WP_014341600.1
COORDINATES: similar to AA sequence:RefSeq:WP_002445590.1
COORDINATES: similar to AA sequence:RefSeq:WP_014657744.1
COORDINATES: similar to AA sequence:RefSeq:WP_013577839.1
COORDINATES: similar to AA sequence:RefSeq:WP_014341605.1
COORDINATES: similar to AA sequence:RefSeq:WP_009309580.1
GO:0003674 - molecular_function [Evidence IEA]
type VI secretion system baseplate subunit TssF
COORDINATES: similar to AA sequence:RefSeq:WP_004160261.1
type VI secretion system baseplate subunit TssG
COORDINATES: similar to AA sequence:RefSeq:WP_014341608.1
type VI secretion system lipoprotein TssJ
COORDINATES: similar to AA sequence:RefSeq:WP_004160259.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
type VI secretion system tip protein VgrG
COORDINATES: protein motif:HMM:NF024894.2
COORDINATES: protein motif:HMM:NF026984.2
restriction endonuclease fold toxin 5 domain-containing protein
COORDINATES: protein motif:HMM:NF026917.2
COORDINATES: similar to AA sequence:RefSeq:WP_013577181.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013577849.1
COORDINATES: similar to AA sequence:RefSeq:WP_013577850.1
type VI secretion system baseplate subunit TssE
COORDINATES: similar to AA sequence:RefSeq:WP_013577852.1
COORDINATES: similar to AA sequence:RefSeq:WP_013577853.1
COORDINATES: similar to AA sequence:RefSeq:WP_014341618.1
COORDINATES: similar to AA sequence:RefSeq:WP_013577855.1
COORDINATES: similar to AA sequence:RefSeq:WP_002555240.1
GO:0016682 - oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor [Evidence IEA]
cytochrome d ubiquinol oxidase subunit II
COORDINATES: similar to AA sequence:RefSeq:WP_013577857.1
COORDINATES: similar to AA sequence:RefSeq:WP_014341621.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013577861.1
COORDINATES: similar to AA sequence:RefSeq:WP_013577862.1
COORDINATES: similar to AA sequence:RefSeq:WP_014341624.1
COORDINATES: similar to AA sequence:RefSeq:WP_004122588.1
COORDINATES: similar to AA sequence:RefSeq:WP_013577865.1
COORDINATES: similar to AA sequence:RefSeq:WP_017455760.1
GO:0008233 - peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013577867.1
COORDINATES: similar to AA sequence:RefSeq:WP_013577868.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014341630.1
COORDINATES: similar to AA sequence:RefSeq:WP_013359001.1
COORDINATES: similar to AA sequence:RefSeq:WP_013577871.1
COORDINATES: similar to AA sequence:RefSeq:WP_014341633.1
FadR/GntR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_002216393.1
COORDINATES: similar to AA sequence:RefSeq:WP_011192131.1
COORDINATES: similar to AA sequence:RefSeq:WP_013577875.1
COORDINATES: similar to AA sequence:RefSeq:WP_004933141.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004933138.1
COORDINATES: similar to AA sequence:RefSeq:WP_013577878.1
COORDINATES: similar to AA sequence:RefSeq:WP_014341640.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0015535 - fucose:proton symporter activity [Evidence IEA]
GO:0015756 - fucose transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004848474.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010298740.1
COORDINATES: similar to AA sequence:RefSeq:WP_004946619.1
GO:0003871 - 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0009086 - methionine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014416561.1
GO:0033744 - L-methionine:thioredoxin-disulfide S-oxidoreductase activity [Evidence IEA]; GO:0008113 - peptide-methionine (S)-S-oxide reductase activity [Evidence IEA]
GO:0030091 - protein repair [Evidence IEA]; GO:0006979 - response to oxidative stress [Evidence IEA]
peptide-methionine (S)-S-oxide reductase MsrA
COORDINATES: similar to AA sequence:RefSeq:WP_008010532.1
GO:0033743 - peptide-methionine (R)-S-oxide reductase activity [Evidence IEA]
peptide-methionine (R)-S-oxide reductase MsrB
COORDINATES: similar to AA sequence:RefSeq:WP_004964449.1
COORDINATES: similar to AA sequence:RefSeq:WP_014341646.1
GO:0015486 - glycoside-pentoside-hexuronide:cation symporter activity [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0006812 - monoatomic cation transport [Evidence IEA]
glycoside-pentoside-hexuronide (GPH):cation symporter
COORDINATES: similar to AA sequence:RefSeq:WP_013577896.1
Hcp family type VI secretion system effector
COORDINATES: similar to AA sequence:RefSeq:WP_013577897.1
COORDINATES: similar to AA sequence:RefSeq:WP_003827189.1
COORDINATES: similar to AA sequence:RefSeq:WP_014341651.1
GO:0004452 - isopentenyl-diphosphate delta-isomerase activity [Evidence IEA]
GO:0008299 - isoprenoid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014416567.1
COORDINATES: similar to AA sequence:RefSeq:WP_014416568.1
biofilm/acid-resistance regulator YmgB/AriR
COORDINATES: similar to AA sequence:RefSeq:WP_004709549.1
COORDINATES: similar to AA sequence:RefSeq:WP_014416570.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013577904.1
COORDINATES: similar to AA sequence:RefSeq:WP_013813529.1
COORDINATES: similar to AA sequence:RefSeq:WP_014416572.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016495741.1
COORDINATES: similar to AA sequence:RefSeq:WP_006326416.1
COORDINATES: similar to AA sequence:RefSeq:WP_010430154.1
GO:0016811 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides [Evidence IEA]
GO:0000272 - polysaccharide catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013577910.1
COORDINATES: similar to AA sequence:RefSeq:WP_014169676.1
COORDINATES: similar to AA sequence:RefSeq:NP_460280.1
PTS N,N'-diacetylchitobiose transporter subunit IIA
COORDINATES: similar to AA sequence:RefSeq:NP_416251.1
GO:0008982 - protein-N(PI)-phosphohistidine-sugar phosphotransferase activity [Evidence IEA]
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]
PTS N,N'-diacetylchitobiose transporter subunit IIC
COORDINATES: similar to AA sequence:RefSeq:YP_005226428.1
COORDINATES: similar to AA sequence:RefSeq:WP_009638923.1
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013359961.1
gluconate 2-dehydrogenase subunit 3 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013507737.1
COORDINATES: similar to AA sequence:RefSeq:WP_009638926.1
COORDINATES: similar to AA sequence:RefSeq:WP_014341671.1
COORDINATES: similar to AA sequence:RefSeq:WP_013577920.1
COORDINATES: similar to AA sequence:RefSeq:WP_013577921.1
COORDINATES: similar to AA sequence:RefSeq:WP_013577922.1
COORDINATES: similar to AA sequence:RefSeq:WP_014341675.1
COORDINATES: similar to AA sequence:RefSeq:WP_013577924.1
COORDINATES: similar to AA sequence:RefSeq:WP_013202315.1
COORDINATES: similar to AA sequence:RefSeq:WP_013577926.1
GO:0071468 - cellular response to acidic pH [Evidence IEA]
biofilm development regulator YmgB/AriR family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013577927.1
COORDINATES: similar to AA sequence:RefSeq:WP_013577928.1
GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
GO:0046690 - response to tellurium ion [Evidence IEA]
tellurite resistance methyltransferase TehB
COORDINATES: similar to AA sequence:RefSeq:WP_004102398.1
COORDINATES: similar to AA sequence:RefSeq:WP_013577930.1
COORDINATES: similar to AA sequence:RefSeq:WP_007371790.1
COORDINATES: similar to AA sequence:RefSeq:NP_415999.1
COORDINATES: similar to AA sequence:RefSeq:WP_013358712.1
COORDINATES: similar to AA sequence:RefSeq:WP_014416585.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:NP_459923.1
IS200/IS605-like element IS1541D family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_019454748.1
methionine ABC transporter substrate-binding lipoprotein MetQ
COORDINATES: similar to AA sequence:RefSeq:WP_014341688.1
COORDINATES: similar to AA sequence:RefSeq:WP_014416586.1
COORDINATES: similar to AA sequence:RefSeq:WP_009110805.1
COORDINATES: similar to AA sequence:RefSeq:WP_014416604.1
COORDINATES: similar to AA sequence:RefSeq:WP_003519720.1
COORDINATES: similar to AA sequence:RefSeq:WP_009110802.1
COORDINATES: similar to AA sequence:RefSeq:WP_013577975.1
COORDINATES: similar to AA sequence:RefSeq:WP_014917114.1
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012772761.1
COORDINATES: similar to AA sequence:RefSeq:WP_014341697.1
COORDINATES: similar to AA sequence:RefSeq:WP_013577979.1
GO:0016020 - membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0048038 - quinone binding [Evidence IEA]
membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family
COORDINATES: similar to AA sequence:RefSeq:WP_013577980.1
type II toxin-antitoxin system HipA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_006706798.1
COORDINATES: similar to AA sequence:RefSeq:WP_015842154.1
COORDINATES: similar to AA sequence:RefSeq:WP_015842155.1
COORDINATES: similar to AA sequence:RefSeq:WP_014416613.1
COORDINATES: similar to AA sequence:RefSeq:WP_013577985.1
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013577986.1
COORDINATES: similar to AA sequence:RefSeq:WP_009652072.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013577988.1
COORDINATES: similar to AA sequence:RefSeq:WP_013577989.1
COORDINATES: similar to AA sequence:RefSeq:YP_005227301.1
COORDINATES: similar to AA sequence:RefSeq:WP_020455789.1
COORDINATES: similar to AA sequence:RefSeq:WP_013573939.1
COORDINATES: similar to AA sequence:RefSeq:WP_015690419.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_000527990.1
GO:0005515 - protein binding [Evidence IEA]
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:YP_005226602.1
COORDINATES: protein motif:HMM:NF022362.2
COORDINATES: similar to AA sequence:RefSeq:WP_004708296.1
COORDINATES: similar to AA sequence:RefSeq:WP_013577992.1
COORDINATES: similar to AA sequence:RefSeq:WP_013577993.1
COORDINATES: similar to AA sequence:RefSeq:WP_014341720.1
COORDINATES: similar to AA sequence:RefSeq:WP_011192780.1
COORDINATES: similar to AA sequence:RefSeq:WP_012303864.1
PLP-dependent aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014544731.1
GO:0003867 - 4-aminobutyrate transaminase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0009448 - gamma-aminobutyric acid metabolic process [Evidence IEA]
4-aminobutyrate--2-oxoglutarate transaminase
COORDINATES: similar to AA sequence:RefSeq:WP_014341724.1
COORDINATES: similar to AA sequence:RefSeq:WP_002209787.1
COORDINATES: similar to AA sequence:RefSeq:WP_014416619.1
COORDINATES: similar to AA sequence:RefSeq:WP_014416620.1
COORDINATES: similar to AA sequence:RefSeq:WP_013578002.1
COORDINATES: similar to AA sequence:RefSeq:WP_014416622.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]
aminotransferase class III-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_009112575.1
COORDINATES: similar to AA sequence:RefSeq:WP_013578006.1
COORDINATES: similar to AA sequence:RefSeq:WP_013578007.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014416626.1
COORDINATES: similar to AA sequence:RefSeq:WP_013578009.1
GO:0019645 - anaerobic electron transport chain [Evidence IEA]
dimethyl sulfoxide reductase anchor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_013578010.1
COORDINATES: similar to AA sequence:RefSeq:WP_018434558.1
trans-2-enoyl-CoA reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005161566.1
zinc-ribbon domain and TM2 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015696018.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014341738.1
COORDINATES: similar to AA sequence:RefSeq:WP_014341739.1
COORDINATES: similar to AA sequence:RefSeq:WP_014341740.1
COORDINATES: similar to AA sequence:RefSeq:WP_013578018.1
COORDINATES: similar to AA sequence:RefSeq:WP_013578019.1
H-NS family nucleoid-associated regulatory protein
COORDINATES: similar to AA sequence:RefSeq:WP_013578020.1
GO:0009055 - electron transfer activity [Evidence IEA]
GO:0022904 - respiratory electron transport chain [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000381615.1
COORDINATES: similar to AA sequence:RefSeq:WP_008806210.1
COORDINATES: similar to AA sequence:RefSeq:WP_003021598.1
COORDINATES: similar to AA sequence:RefSeq:WP_013578024.1
COORDINATES: similar to AA sequence:RefSeq:WP_017693927.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014341749.1
COORDINATES: similar to AA sequence:RefSeq:WP_013578027.1
COORDINATES: similar to AA sequence:RefSeq:WP_014341751.1
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_009363822.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009897 - external side of plasma membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0033296 - rhamnose binding [Evidence IEA]; GO:0015153 - rhamnose transmembrane transporter activity [Evidence IEA]
GO:0015762 - rhamnose transmembrane transport [Evidence IEA]
rhamnose ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013578030.1
COORDINATES: similar to AA sequence:RefSeq:WP_015842219.1
GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013578032.1
COORDINATES: similar to AA sequence:RefSeq:WP_013578033.1
COORDINATES: similar to AA sequence:RefSeq:WP_014341757.1
COORDINATES: similar to AA sequence:RefSeq:WP_014341758.1
COORDINATES: similar to AA sequence:RefSeq:WP_014341759.1
glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_001324367.1
COORDINATES: similar to AA sequence:RefSeq:WP_012134656.1
COORDINATES: similar to AA sequence:RefSeq:WP_010300667.1
COORDINATES: similar to AA sequence:RefSeq:WP_013578045.1
COORDINATES: similar to AA sequence:RefSeq:WP_020885049.1
COORDINATES: similar to AA sequence:RefSeq:WP_014341765.1
COORDINATES: similar to AA sequence:RefSeq:WP_009113609.1
COORDINATES: similar to AA sequence:RefSeq:WP_013578050.1
COORDINATES: similar to AA sequence:RefSeq:WP_001462551.1
COORDINATES: similar to AA sequence:RefSeq:YP_005227899.1
COORDINATES: similar to AA sequence:RefSeq:WP_014341770.1
COORDINATES: similar to AA sequence:RefSeq:WP_013578054.1
COORDINATES: similar to AA sequence:RefSeq:YP_005227896.1
COORDINATES: similar to AA sequence:RefSeq:YP_005227895.1
COORDINATES: similar to AA sequence:RefSeq:WP_014416640.1
COORDINATES: similar to AA sequence:RefSeq:WP_013577794.1
COORDINATES: similar to AA sequence:RefSeq:WP_013578058.1
COORDINATES: similar to AA sequence:RefSeq:WP_013578059.1
COORDINATES: similar to AA sequence:RefSeq:WP_013578060.1
COORDINATES: similar to AA sequence:RefSeq:WP_014341780.1
COORDINATES: similar to AA sequence:RefSeq:WP_013578062.1
COORDINATES: similar to AA sequence:RefSeq:WP_013578063.1
COORDINATES: similar to AA sequence:RefSeq:WP_015690002.1
COORDINATES: similar to AA sequence:RefSeq:WP_015690001.1
COORDINATES: similar to AA sequence:RefSeq:WP_013578068.1
COORDINATES: similar to AA sequence:RefSeq:WP_015730248.1
COORDINATES: similar to AA sequence:RefSeq:WP_013578071.1
COORDINATES: similar to AA sequence:RefSeq:WP_014341789.1
COORDINATES: similar to AA sequence:RefSeq:WP_013578073.1
dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013578074.1
COORDINATES: similar to AA sequence:RefSeq:WP_014341792.1
COORDINATES: similar to AA sequence:RefSeq:WP_006328123.1
GO:0004564 - beta-fructofuranosidase activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014341794.1
sucrose-specific PTS transporter subunit IIBC
COORDINATES: similar to AA sequence:RefSeq:WP_013578078.1
COORDINATES: similar to AA sequence:RefSeq:WP_013578079.1
GO:0016301 - kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010284836.1
GO:0009279 - cell outer membrane [Evidence IEA]
outer membrane protein assembly factor BamA
COORDINATES: similar to AA sequence:RefSeq:WP_013578081.1
COORDINATES: similar to AA sequence:RefSeq:WP_008813545.1
TRAP transporter substrate-binding protein DctP
COORDINATES: similar to AA sequence:RefSeq:WP_006318362.1
COORDINATES: similar to AA sequence:RefSeq:WP_013578093.1
COORDINATES: similar to AA sequence:RefSeq:WP_013578094.1
COORDINATES: similar to AA sequence:RefSeq:WP_004237642.1
COORDINATES: similar to AA sequence:RefSeq:WP_013578095.1
GO:0036211 - protein modification process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013578096.1
COORDINATES: similar to AA sequence:RefSeq:WP_014341805.1
COORDINATES: similar to AA sequence:RefSeq:WP_008043404.1
COORDINATES: similar to AA sequence:RefSeq:WP_019454467.1
COORDINATES: similar to AA sequence:RefSeq:WP_013578100.1
cytochrome b/b6 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009636693.1
COORDINATES: similar to AA sequence:RefSeq:WP_014416645.1
COORDINATES: similar to AA sequence:RefSeq:WP_003162861.1
COORDINATES: similar to AA sequence:RefSeq:WP_013578106.1
COORDINATES: similar to AA sequence:RefSeq:WP_000391998.1
COORDINATES: similar to AA sequence:RefSeq:WP_008499668.1
COORDINATES: similar to AA sequence:RefSeq:WP_016232430.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_019456364.1
COORDINATES: similar to AA sequence:RefSeq:WP_004938574.1
COORDINATES: similar to AA sequence:RefSeq:WP_017802700.1
Fe(3+) dicitrate ABC transporter substrate-binding protein FecB
COORDINATES: similar to AA sequence:RefSeq:WP_012442734.1
iron-dicitrate ABC transporter permease FecC
COORDINATES: similar to AA sequence:RefSeq:WP_015836025.1
Fe(3+) dicitrate ABC transporter permease subunit FecD
COORDINATES: similar to AA sequence:RefSeq:WP_016238230.1
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE
COORDINATES: similar to AA sequence:RefSeq:WP_008501360.1
COORDINATES: similar to AA sequence:RefSeq:WP_012768502.1
COORDINATES: similar to AA sequence:RefSeq:WP_014416655.1
COORDINATES: similar to AA sequence:RefSeq:WP_014341824.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0004457 - lactate dehydrogenase activity [Evidence IEA]
GO:0006089 - lactate metabolic process [Evidence IEA]
FMN-dependent L-lactate dehydrogenase LldD
COORDINATES: similar to AA sequence:RefSeq:WP_013578114.1
membrane-associated sensor domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013578115.1
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO:0018189 - pyrroloquinoline quinone biosynthetic process [Evidence IEA]
pyrroloquinoline quinone biosynthesis protein PqqF
COORDINATES: similar to AA sequence:RefSeq:WP_003853499.1
GO:0018149 - peptide cross-linking [Evidence IEA]; GO:0018189 - pyrroloquinoline quinone biosynthetic process [Evidence IEA]
pyrroloquinoline quinone biosynthesis protein PqqE
COORDINATES: similar to AA sequence:RefSeq:WP_004170875.1
GO:0048038 - quinone binding [Evidence IEA]
pyrroloquinoline quinone biosynthesis peptide chaperone PqqD
COORDINATES: similar to AA sequence:RefSeq:WP_013578118.1
COORDINATES: similar to AA sequence:RefSeq:WP_004173319.1
pyrroloquinoline quinone biosynthesis protein PqqB
COORDINATES: similar to AA sequence:RefSeq:NP_250675.1
GO:0003824 - catalytic activity [Evidence IEA]
pyrroloquinoline quinone precursor peptide PqqA
COORDINATES: similar to AA sequence:RefSeq:WP_014416661.1
COORDINATES: similar to AA sequence:RefSeq:WP_013578122.1
GO:0015344 - siderophore uptake transmembrane transporter activity [Evidence IEA]; GO:0038023 - signaling receptor activity [Evidence IEA]
GO:0015891 - siderophore transport [Evidence IEA]
ferric-rhodotorulic acid/ferric-coprogen receptor FhuE
COORDINATES: similar to AA sequence:RefSeq:WP_013578123.1
homocysteine S-methyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013578124.1
COORDINATES: similar to AA sequence:RefSeq:WP_012442104.1
COORDINATES: similar to AA sequence:RefSeq:WP_016943034.1
COORDINATES: similar to AA sequence:RefSeq:WP_017494411.1
COORDINATES: similar to AA sequence:RefSeq:WP_013578128.1
COORDINATES: similar to AA sequence:RefSeq:WP_032489170.1
RAHN family extended-spectrum class A beta-lactamase
COORDINATES: similar to AA sequence:RefSeq:WP_014416667.1
GO:0009058 - biosynthetic process [Evidence IEA]
diaminobutyrate--2-oxoglutarate transaminase
COORDINATES: similar to AA sequence:RefSeq:WP_006321865.1
aspartate aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014416668.1
mechanosensitive ion channel family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013096670.1
COORDINATES: similar to AA sequence:RefSeq:WP_007682198.1
COORDINATES: similar to AA sequence:RefSeq:WP_014341847.1
GO:0047470 - (1,4)-alpha-D-glucan 1-alpha-D-glucosylmutase activity [Evidence IEA]
GO:0005992 - trehalose biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013578135.1
GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]
malto-oligosyltrehalose trehalohydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_013578136.1
COORDINATES: similar to AA sequence:RefSeq:WP_013578137.1
COORDINATES: similar to AA sequence:RefSeq:WP_013578141.1
COORDINATES: similar to AA sequence:RefSeq:YP_005227925.1
two-component system response regulator BtsR
COORDINATES: similar to AA sequence:RefSeq:WP_014416674.1
COORDINATES: similar to AA sequence:RefSeq:NP_463390.1
COORDINATES: similar to AA sequence:RefSeq:NP_418774.2
GO:0009267 - cellular response to starvation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002887049.1
type VI secretion system tube protein Hcp
COORDINATES: similar to AA sequence:RefSeq:WP_002439346.1
COORDINATES: similar to AA sequence:RefSeq:WP_001568741.1
translesion error-prone DNA polymerase V autoproteolytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_008807723.1
COORDINATES: similar to AA sequence:RefSeq:WP_020884135.1
COORDINATES: similar to AA sequence:RefSeq:WP_013578165.1
GO:0030638 - polyketide metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013578166.1
COORDINATES: similar to AA sequence:RefSeq:WP_013578167.1
aldo/keto reductase family oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_009635058.1
COORDINATES: similar to AA sequence:RefSeq:WP_004179079.1
COORDINATES: similar to AA sequence:RefSeq:WP_004161038.1
COORDINATES: similar to AA sequence:RefSeq:WP_013578173.1
type VI secretion system contractile sheath small subunit
COORDINATES: similar to AA sequence:RefSeq:WP_013578174.1
type VI secretion system contractile sheath large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_003854100.1
COORDINATES: similar to AA sequence:RefSeq:WP_014416688.1
COORDINATES: similar to AA sequence:RefSeq:WP_014341870.1
COORDINATES: similar to AA sequence:RefSeq:WP_013578178.1
COORDINATES: similar to AA sequence:RefSeq:WP_014416689.1
type VI secretion system tip protein TssI/VgrG
COORDINATES: similar to AA sequence:RefSeq:WP_013578180.1
COORDINATES: similar to AA sequence:RefSeq:WP_014341874.1
COORDINATES: similar to AA sequence:RefSeq:WP_014341875.1
COORDINATES: similar to AA sequence:RefSeq:WP_013578183.1
COORDINATES: similar to AA sequence:RefSeq:WP_013578184.1
type VI secretion system baseplate subunit TssK
COORDINATES: similar to AA sequence:RefSeq:WP_013578185.1
DotU family type IV/VI secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_014416692.1
COORDINATES: similar to AA sequence:RefSeq:WP_014416693.1
COORDINATES: similar to AA sequence:RefSeq:WP_013578188.1
COORDINATES: similar to AA sequence:RefSeq:WP_013578190.1
GO:0015079 - potassium ion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013578191.1
COORDINATES: similar to AA sequence:RefSeq:WP_013578192.1
serine hydrolase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014341887.1
COORDINATES: similar to AA sequence:RefSeq:WP_013578195.1
COORDINATES: similar to AA sequence:RefSeq:WP_006809464.1
COORDINATES: similar to AA sequence:RefSeq:WP_013578197.1
COORDINATES: similar to AA sequence:RefSeq:WP_013578198.1
COORDINATES: similar to AA sequence:RefSeq:WP_013578199.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]; GO:0046914 - transition metal ion binding [Evidence IEA]
manganese-binding transcriptional regulator MntR
COORDINATES: similar to AA sequence:RefSeq:WP_005182889.1
metal ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013578201.1
COORDINATES: similar to AA sequence:RefSeq:WP_013578202.1
COORDINATES: similar to AA sequence:RefSeq:WP_014416695.1
COORDINATES: similar to AA sequence:RefSeq:WP_014341896.1
COORDINATES: similar to AA sequence:RefSeq:WP_015585234.1
GO:0015173 - aromatic amino acid transmembrane transporter activity [Evidence IEA]
GO:0015801 - aromatic amino acid transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014341899.1
COORDINATES: similar to AA sequence:RefSeq:WP_014416697.1
ABC-F family ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013578276.1
COORDINATES: similar to AA sequence:RefSeq:WP_013578277.1
COORDINATES: similar to AA sequence:RefSeq:WP_013578278.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014341904.1
COORDINATES: similar to AA sequence:RefSeq:WP_014341905.1
COORDINATES: similar to AA sequence:RefSeq:NP_460429.2
COORDINATES: similar to AA sequence:RefSeq:WP_013578286.1
COORDINATES: similar to AA sequence:RefSeq:WP_014341908.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013578288.1
COORDINATES: similar to AA sequence:RefSeq:WP_013196205.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
two-component system response regulator DcuR
COORDINATES: similar to AA sequence:RefSeq:WP_013578290.1
DcuS/MalK family sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_013578291.1
COORDINATES: similar to AA sequence:RefSeq:WP_019459381.1
COORDINATES: similar to AA sequence:RefSeq:WP_014341913.1
COORDINATES: similar to AA sequence:RefSeq:WP_004962967.1
COORDINATES: similar to AA sequence:RefSeq:WP_010244984.1
COORDINATES: similar to AA sequence:RefSeq:WP_013578295.1
MurR/RpiR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006326441.1
GO:0019867 - outer membrane [Evidence IEA]
GO:0015343 - siderophore-iron transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013578297.1
COORDINATES: similar to AA sequence:RefSeq:WP_015369856.1
COORDINATES: similar to AA sequence:RefSeq:WP_014341921.1
GO:0008794 - arsenate reductase (glutaredoxin) activity [Evidence IEA]
glutaredoxin-dependent arsenate reductase
COORDINATES: similar to AA sequence:RefSeq:WP_012540054.1
COORDINATES: similar to AA sequence:RefSeq:WP_017693734.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_003019978.1
COORDINATES: similar to AA sequence:RefSeq:WP_014341928.1
COORDINATES: similar to AA sequence:RefSeq:WP_013577711.1
COORDINATES: similar to AA sequence:RefSeq:WP_019079414.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014833373.1
COORDINATES: similar to AA sequence:RefSeq:WP_013577715.1
COORDINATES: similar to AA sequence:RefSeq:WP_013577716.1
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013577717.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013577718.1
GO:0004555 - alpha,alpha-trehalase activity [Evidence IEA]
GO:0005991 - trehalose metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014416480.1
GO:0003825 - alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity [Evidence IEA]
alpha,alpha-trehalose-phosphate synthase
COORDINATES: similar to AA sequence:RefSeq:WP_014341936.1
GO:0004805 - trehalose-phosphatase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013577725.1
oligogalacturonate-specific porin KdgM family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014416484.1
right-handed parallel beta-helix repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014341939.1
COORDINATES: similar to AA sequence:RefSeq:WP_013577728.1
COORDINATES: similar to AA sequence:RefSeq:WP_013577729.1
COORDINATES: similar to AA sequence:RefSeq:WP_013577730.1
type VI secretion system tube protein TssD
COORDINATES: similar to AA sequence:RefSeq:WP_013577731.1
COORDINATES: similar to AA sequence:RefSeq:WP_014341945.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015839558.1
sugar ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_006318818.1
COORDINATES: similar to AA sequence:RefSeq:WP_013577736.1
COORDINATES: similar to AA sequence:RefSeq:WP_009636115.1
GO:0050532 - 2-phosphosulfolactate phosphatase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014416490.1
COORDINATES: similar to AA sequence:RefSeq:WP_013577739.1
COORDINATES: similar to AA sequence:RefSeq:WP_014341952.1
COORDINATES: protein motif:HMM:NF019078.2
COORDINATES: protein motif:HMM:NF036416.2
TcfC E-set like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006820909.1
COORDINATES: protein motif:HMM:NF012565.2
GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0071555 - cell wall organization [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013577741.1
COORDINATES: similar to AA sequence:RefSeq:WP_014341958.1
COORDINATES: similar to AA sequence:RefSeq:WP_013577743.1
COORDINATES: similar to AA sequence:RefSeq:WP_006820796.1
GO:0004332 - fructose-bisphosphate aldolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013577745.1
type 1 glutamine amidotransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014341961.1
COORDINATES: similar to AA sequence:RefSeq:WP_013577748.1
COORDINATES: similar to AA sequence:RefSeq:WP_013577749.1
COORDINATES: similar to AA sequence:RefSeq:WP_013577750.1
GO:0005509 - calcium ion binding [Evidence IEA]; GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004942953.1
glycine betaine/L-proline transporter ProP
COORDINATES: similar to AA sequence:RefSeq:WP_014416494.1
GO:0047487 - oligogalacturonide lyase activity [Evidence IEA]
GO:0045490 - pectin catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014341967.1
COORDINATES: similar to AA sequence:RefSeq:WP_005166458.1
RpiB/LacA/LacB family sugar-phosphate isomerase
COORDINATES: similar to AA sequence:RefSeq:YP_005228631.1
GO:0008678 - 2-deoxy-D-gluconate 3-dehydrogenase activity [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD
COORDINATES: similar to AA sequence:RefSeq:WP_013577757.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014341968.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_014341969.1
COORDINATES: similar to AA sequence:RefSeq:WP_013577760.1
COORDINATES: similar to AA sequence:RefSeq:NP_415895.1
GO:0015288 - porin activity [Evidence IEA]
GO:0034220 - monoatomic ion transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013577816.1
COORDINATES: similar to AA sequence:RefSeq:WP_014416542.1
COORDINATES: similar to AA sequence:RefSeq:WP_017490139.1
GO:0019152 - acetoin dehydrogenase activity [Evidence IEA]
GO:0045150 - acetoin catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013577818.1
COORDINATES: protein motif:HMM:NF011572.0
COORDINATES: similar to AA sequence:RefSeq:WP_014416543.1
tannase/feruloyl esterase family alpha/beta hydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_006535641.1
COORDINATES: similar to AA sequence:RefSeq:WP_014341978.1
COORDINATES: similar to AA sequence:RefSeq:WP_014606918.1
COORDINATES: similar to AA sequence:RefSeq:WP_014341981.1
COORDINATES: similar to AA sequence:RefSeq:WP_017892320.1
COORDINATES: similar to AA sequence:RefSeq:WP_015741067.1
COORDINATES: similar to AA sequence:RefSeq:WP_014341984.1
type VI secretion system protein TssL, short form
COORDINATES: similar to AA sequence:RefSeq:WP_013577829.1