Glaesserella parasuis strain YHP1818 plasmid unnamed, complete sequence.
Glaesserella parasuis (Haemophilus parasuis)
Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Glaesserella.
Molecular Characterization of a novel Integrative Conjugative Element in Glaesserella parasuis
Submitted (06-MAR-2021) College of Animal Science and Veterinary Medicine, Henan Agricultural University, PinganRoad, Zhengzhou 450046, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP071488.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. 3.13.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 128.0x\nSequencing Technology :: Oxford Nanopore MinION; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/19/2022 15:08:59\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,344\nCDSs (total) :: 2,260\nGenes (coding) :: 2,133\nCDSs (with protein) :: 2,133\nGenes (RNA) :: 84\nrRNAs :: 8, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 6, 6 (5S, 16S, 23S)\ntRNAs :: 60\nncRNAs :: 4\nPseudo Genes (total) :: 127\nCDSs (without protein) :: 127\nPseudo Genes (ambiguous residues) :: 0 of 127\nPseudo Genes (frameshifted) :: 64 of 127\nPseudo Genes (incomplete) :: 80 of 127\nPseudo Genes (internal stop) :: 17 of 127\nPseudo Genes (multiple problems) :: 30 of 127\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_012262961.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005821902.1
PDDEXK nuclease domain-containing protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_010128074.1
GO:0004789 - thiamine-phosphate diphosphorylase activity [Evidence IEA]
GO:0009228 - thiamine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003822835.1
GO:0008902 - hydroxymethylpyrimidine kinase activity [Evidence IEA]; GO:0008972 - phosphomethylpyrimidine kinase activity [Evidence IEA]
bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_010787317.1
GO:0004417 - hydroxyethylthiazole kinase activity [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00059
TPP riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_012621948.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005618007.1
GO:0008237 - metallopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005713289.1
COORDINATES: similar to AA sequence:RefSeq:WP_005713287.1
COORDINATES: protein motif:HMM:TIGR03071.1
HipA N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF019421.2
COORDINATES: similar to AA sequence:RefSeq:WP_016138480.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
PLP-dependent aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005821003.1
GO:0015035 - protein-disulfide reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015939933.1
COORDINATES: protein motif:HMM:NF012027.0
GO:0003677 - DNA binding [Evidence IEA]; GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]
type III restriction-modification system endonuclease
COORDINATES: similar to AA sequence:RefSeq:WP_015939935.1
COORDINATES: similar to AA sequence:RefSeq:WP_005667597.1
COORDINATES: similar to AA sequence:RefSeq:WP_015939937.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012340850.1
cation diffusion facilitator family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_010787306.1
Cu(I)-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006248870.1
COORDINATES: similar to AA sequence:RefSeq:WP_015939940.1
COORDINATES: similar to AA sequence:RefSeq:WP_015939941.1