Streptomyces seoulensis strain KCTC 9819 plasmid unnamed.
Bacteria; Actinomycetota; Actinomycetes; Kitasatosporales; Streptomycetaceae; Streptomyces.
The complete genome sequence of Streptomyces seoulensis, a pioneer strain for nickel superoxide dismutase discovery
Submitted (21-AUG-2018) College of Medicine, Seoul National University, 202, Biomedical Building, 103 Daehakro, Jongno-gu, Seoul, Seoul 03080, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP032230.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 215.88x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/19/2023 15:42:27\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,878\nCDSs (total) :: 5,791\nGenes (coding) :: 5,701\nCDSs (with protein) :: 5,701\nGenes (RNA) :: 87\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 66\nncRNAs :: 3\nPseudo Genes (total) :: 90\nCDSs (without protein) :: 90\nPseudo Genes (ambiguous residues) :: 0 of 90\nPseudo Genes (frameshifted) :: 31 of 90\nPseudo Genes (incomplete) :: 71 of 90\nPseudo Genes (internal stop) :: 13 of 90\nPseudo Genes (multiple problems) :: 21 of 90\n##Genome-Annotation-Data-END##
COORDINATES: ab initio prediction:GeneMarkS-2+
incomplete; too short partial abutting assembly gap; missing C-terminus; Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF017520.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR01760.1
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0016032 - viral process [Evidence IEA]
COORDINATES: protein motif:HMM:NF039652.1
COORDINATES: similar to AA sequence:RefSeq:WP_006383598.1
COORDINATES: similar to AA sequence:RefSeq:WP_009721268.1
COORDINATES: protein motif:HMM:TIGR01443.1
COORDINATES: protein motif:HMM:NF024784.2
HNH endonuclease signature motif containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018850684.1
COORDINATES: similar to AA sequence:RefSeq:WP_009721185.1
COORDINATES: protein motif:HMM:NF012610.2
COORDINATES: similar to AA sequence:RefSeq:WP_014158424.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
DnaB-like helicase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003987694.1
COORDINATES: protein motif:HMM:NF017026.2
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003958687.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018850706.1
COORDINATES: similar to AA sequence:RefSeq:WP_016638253.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014669342.1
COORDINATES: protein motif:HMM:NF025068.2
COORDINATES: similar to AA sequence:RefSeq:WP_020135011.1
COORDINATES: protein motif:HMM:NF019976.2
nuclease-related domain-containing protein
COORDINATES: protein motif:HMM:NF012422.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LuxR C-terminal-related transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018825228.1
COORDINATES: similar to AA sequence:RefSeq:WP_003991485.1
COORDINATES: protein motif:HMM:NF014520.2
COORDINATES: protein motif:HMM:NF017663.2
RusA family crossover junction endodeoxyribonuclease
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_013713110.1
COORDINATES: protein motif:HMM:NF017103.2
COORDINATES: similar to AA sequence:RefSeq:WP_019060027.1
COORDINATES: protein motif:HMM:NF039693.1
COORDINATES: similar to AA sequence:RefSeq:WP_019061722.1
COORDINATES: protein motif:HMM:NF016024.2
COORDINATES: similar to AA sequence:RefSeq:WP_019761953.1
COORDINATES: similar to AA sequence:RefSeq:WP_018588575.1
COORDINATES: similar to AA sequence:RefSeq:WP_014670166.1
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: similar to AA sequence:RefSeq:WP_012948447.1
COORDINATES: similar to AA sequence:RefSeq:WP_019329478.1
COORDINATES: similar to AA sequence:RefSeq:WP_017568210.1
COORDINATES: similar to AA sequence:RefSeq:WP_011187000.1
GO:0008829 - dCTP deaminase activity [Evidence IEA]
GO:0009394 - 2'-deoxyribonucleotide metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014060569.1
COORDINATES: similar to AA sequence:RefSeq:WP_007459661.1