Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders
The Release 6 reference sequence of the Drosophila melanogaster genome
Sequence finishing and mapping of Drosophila melanogaster heterochromatin
The Release 5.1 annotation of Drosophila melanogaster heterochromatin
Combined evidence annotation of transposable elements in genome sequences
Heterochromatic sequences in a Drosophila whole-genome shotgun assembly
Genome Biol. 3 (12), RESEARCH0085 (2002)
The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective
Genome Biol. 3 (12), RESEARCH0084 (2002)
Annotation of the Drosophila melanogaster euchromatic genome: a systematic review
Genome Biol. 3 (12), RESEARCH0083 (2002)
Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence
Genome Biol. 3 (12), RESEARCH0079 (2002)
The genome sequence of Drosophila melanogaster
Drosophila melanogaster release 4 sequence
Submitted (15-NOV-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
Submitted (15-JAN-2014) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA
Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA
Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA
Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA
REVIEWED REFSEQ: This record has been curated by FlyBase. The\nreference sequence is identical to CP007106.\n\nOn or before Jul 31, 2014 this sequence version replaced\nNW_001848860.1, NW_001844735.1, NW_001844843.1, NW_001844868.1,\nNW_001844869.1, NW_001844874.1, NW_001844917.1, NW_001845004.1,\nNW_001845447.1, NW_001845711.1, NW_001845825.1, NW_001846080.1,\nNW_001846110.1, NW_001847094.1.\nThis is Release 6 of the Drosophila melanogaster genome, produced\njointly by the Berkeley Drosophila Genome Project, Celera Genomics,\nand the Drosophila Heterochromatin Genome Project. The gene\nannotation is based on Release 6.46 provided by FlyBase. Additional\ninformation about this assembly and annotation can be found at\nhttp://www.fruitfly.org and http://flybase.org.\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: FlyBase\nAnnotation Status :: Full annotation\nAnnotation Version :: Release 6.46\nURL :: http://flybase.org\n##Genome-Annotation-Data-END##
Protein phosphatase 1, Y-linked 1; Annotated by Drosophila Heterochromatin Genome Project, Lawrence Berkeley National Lab, http://www.dhgp.org
CG41534 gene product from transcript CG41534-RC; CG41534-PC; Pp1-Y1-PC
male fertility factor kl5; Annotated by Drosophila Heterochromatin Genome Project, Lawrence Berkeley National Lab, http://www.dhgp.org
kl-5-RC; Dmel\\kl-5-RC; CG45786-RC; Dmel\\CG45786-RC; unusual splice
CG45786 gene product from transcript CG45786-RC; unusual splice; CG45786-PC; kl-5-PC; dynein-related heavy chain; Y-linked flagellar dynein; male fertility factor kl-5; dynein heavy chain in Yh3
polycystine-related-Y; Annotated by Drosophila Heterochromatin Genome Project, Lawrence Berkeley National Lab, http://www.dhgp.org
PRY-RA; Dmel\\PRY-RA; CG45787-RA; Dmel\\CG45787-RA
CG45787 gene product from transcript CG45787-RA; CG45787-PA; PRY-PA
male fertility factor kl3; Annotated by Drosophila Heterochromatin Genome Project, Lawrence Berkeley National Lab, http://www.dhgp.org
CG45785 gene product from transcript CG45785-RC; CG45785-PC; kl-3-PC; gamma-dynein heavy chain; male fertility factor kl-3
male fertility factor kl2; Annotated by Drosophila Heterochromatin Genome Project, Lawrence Berkeley National Lab, http://www.dhgp.org
CG17866 gene product from transcript CG17866-RD; CG17866-PD; kl-2-PD; 1beta-dynein heavy chain; male fertility factor kl-2
Aldehyde reductase; CG40064; Dmel\\CG40064; Y
Aldehyde reductase Y; Annotated by Drosophila Heterochromatin Genome Project, Lawrence Berkeley National Lab, http://www.dhgp.org
aldehyde reductase Y, transcript variant D
ARY-RD; Dmel\\ARY-RD; CG40064-RD; Dmel\\CG40064-RD
aldehyde reductase Y, transcript variant C
ARY-RC; Dmel\\ARY-RC; CG40064-RC; Dmel\\CG40064-RC
CG40064 gene product from transcript CG40064-RD; CG40064-PD; ARY-PD; aldehyde reductase Y
CG40064 gene product from transcript CG40064-RC; CG40064-PC; ARY-PC; aldehyde reductase Y
putative non-coding RNA; Su(Ste):CR42422-RA; Dmel\\Su(Ste):CR42422-RA; CR42422-RA; Dmel\\CR42422-RA
putative non-coding RNA; Su(Ste):CR42407-RA; Dmel\\Su(Ste):CR42407-RA; CR42407-RA; Dmel\\CR42407-RA
Suppressor of Stellate:CR41533; Annotated by Drosophila Heterochromatin Genome Project, Lawrence Berkeley National Lab, http://www.dhgp.org
putative non-coding RNA; Su(Ste):CR41533-RB; Dmel\\Su(Ste):CR41533-RB; CR41533-RB; Dmel\\CR41533-RB
putative non-coding RNA; Su(Ste):CR42419-RB; Dmel\\Su(Ste):CR42419-RB; CR42419-RB; Dmel\\CR42419-RB
putative non-coding RNA; Su(Ste):CR42420-RA; Dmel\\Su(Ste):CR42420-RA; CR42420-RA; Dmel\\CR42420-RA
putative non-coding RNA; Su(Ste):CR42421-RA; Dmel\\Su(Ste):CR42421-RA; CR42421-RA; Dmel\\CR42421-RA
putative non-coding RNA; Su(Ste):CR42430-RA; Dmel\\Su(Ste):CR42430-RA; CR42430-RA; Dmel\\CR42430-RA
putative non-coding RNA; Su(Ste):CR42426-RA; Dmel\\Su(Ste):CR42426-RA; CR42426-RA; Dmel\\CR42426-RA
putative non-coding RNA; Su(Ste):CR42427-RA; Dmel\\Su(Ste):CR42427-RA; CR42427-RA; Dmel\\CR42427-RA
putative non-coding RNA; Su(Ste):CR42428-RA; Dmel\\Su(Ste):CR42428-RA; CR42428-RA; Dmel\\CR42428-RA
Suppressor of Stellate:CR40820; Annotated by Drosophila Heterochromatin Genome Project, Lawrence Berkeley National Lab, http://www.dhgp.org
putative non-coding RNA; Su(Ste):CR40820-RB; Dmel\\Su(Ste):CR40820-RB; CR40820-RB; Dmel\\CR40820-RB
putative non-coding RNA; Su(Ste):CR42432-RB; Dmel\\Su(Ste):CR42432-RB; CR42432-RB; Dmel\\CR42432-RB
putative non-coding RNA; Su(Ste):CR42412-RA; Dmel\\Su(Ste):CR42412-RA; CR42412-RA; Dmel\\CR42412-RA
putative non-coding RNA; Su(Ste):CR42438-RB; Dmel\\Su(Ste):CR42438-RB; CR42438-RB; Dmel\\CR42438-RB
putative non-coding RNA; Su(Ste):CR45795-RA; Dmel\\Su(Ste):CR45795-RA; CR45795-RA; Dmel\\CR45795-RA
putative non-coding RNA; Su(Ste):CR45794-RA; Dmel\\Su(Ste):CR45794-RA; CR45794-RA; Dmel\\CR45794-RA
putative non-coding RNA; Su(Ste):CR42444-RB; Dmel\\Su(Ste):CR42444-RB; CR42444-RB; Dmel\\CR42444-RB
putative non-coding RNA; Su(Ste):CR42410-RA; Dmel\\Su(Ste):CR42410-RA; CR42410-RA; Dmel\\CR42410-RA
putative non-coding RNA; Su(Ste):CR42414-RA; Dmel\\Su(Ste):CR42414-RA; CR42414-RA; Dmel\\CR42414-RA
putative non-coding RNA; Su(Ste):CR42415-RA; Dmel\\Su(Ste):CR42415-RA; CR42415-RA; Dmel\\CR42415-RA
putative non-coding RNA; Su(Ste):CR42425-RA; Dmel\\Su(Ste):CR42425-RA; CR42425-RA; Dmel\\CR42425-RA
putative non-coding RNA; Su(Ste):CR42416-RA; Dmel\\Su(Ste):CR42416-RA; CR42416-RA; Dmel\\CR42416-RA
putative non-coding RNA; Su(Ste):CR42417-RA; Dmel\\Su(Ste):CR42417-RA; CR42417-RA; Dmel\\CR42417-RA
putative non-coding RNA; Su(Ste):CR45796-RA; Dmel\\Su(Ste):CR45796-RA; CR45796-RA; Dmel\\CR45796-RA
long non-coding RNA:CR40629; Annotated by Drosophila Heterochromatin Genome Project, Lawrence Berkeley National Lab, http://www.dhgp.org
putative non-coding RNA; lncRNA:CR40629-RC; Dmel\\lncRNA:CR40629-RC; CR40629-RC; Dmel\\CR40629-RC
CG40440; Dmel\\CG40440; PPR; PPr-Y; PprY
Annotated by Drosophila Heterochromatin Genome Project, Lawrence Berkeley National Lab, http://www.dhgp.org
Ppr-Y-RB; Dmel\\Ppr-Y-RB; CG40440-RB; Dmel\\CG40440-RB
CG40440 gene product from transcript CG40440-RB; CG40440-PB; Ppr-Y-PB
WD40 Y; Annotated by Drosophila Heterochromatin Genome Project, Lawrence Berkeley National Lab, http://www.dhgp.org
WDY-RC; Dmel\\WDY-RC; CG45799-RC; Dmel\\CG45799-RC; unusual splice
CG45799 gene product from transcript CG45799-RC; unusual splice; CG45799-PC; WDY-PC
putative non-coding RNA; Su(Ste):CR42429-RA; Dmel\\Su(Ste):CR42429-RA; CR42429-RA; Dmel\\CR42429-RA
putative non-coding RNA; Su(Ste):CR42431-RA; Dmel\\Su(Ste):CR42431-RA; CR42431-RA; Dmel\\CR42431-RA
putative non-coding RNA; Su(Ste):CR42424-RA; Dmel\\Su(Ste):CR42424-RA; CR42424-RA; Dmel\\CR42424-RA
flagrante delicto Y; Annotated by Drosophila Heterochromatin Genome Project, Lawrence Berkeley National Lab, http://www.dhgp.org
flagrante delicto Y, transcript variant E
FDY-RE; Dmel\\FDY-RE; CG41503-RE; Dmel\\CG41503-RE
flagrante delicto Y, transcript variant D
FDY-RD; Dmel\\FDY-RD; CG41503-RD; Dmel\\CG41503-RD
annotated by transcript or proteomic data
CG41503 gene product from transcript CG41503-RE; sequencing error; CG41503-PE; FDY-PE
CG41503 gene product from transcript CG41503-RD; sequencing error; CG41503-PD; FDY-PD
CG46191 gene product from transcript CG46191-RA; CG46191-PA; Mst35Ba-related
CG46192 gene product from transcript CG46192-RA; CG46192-PA; Mst35Ba-related
CG46193 gene product from transcript CG46193-RA; CG46193-PA; Mst35Ba-related
alternate names: ade5-related; Annotated by Drosophila Heterochromatin Genome Project, Lawrence Berkeley National Lab, http://www.dhgp.org
CG45763 gene product from transcript CG45763-RA; CG45763-PA; Mst77Y-4-PA
CG45764 gene product from transcript CG45764-RA; CG45764-PA
CG45765 gene product from transcript CG45765-RA; CG45765-PA
CG45766 gene product from transcript CG45766-RA; CG45766-PA
CG45768 gene product from transcript CG45768-RA; CG45768-PA; Mst77Y-7-PA
Male-specific pseudogene 77Y 8; alternate names: Male-specific transcript 77Y 8
CG45769 gene product from transcript CG45769-RA; CG45769-PA; Mst77Y-9-PA
CG45770 gene product from transcript CG45770-RA; CG45770-PA
CG45767 gene product from transcript CG45767-RA; CG45767-PA; Mst77Y-13-PA
Protein phosphatase 1, Y-linked 2; Annotated by Drosophila Heterochromatin Genome Project, Lawrence Berkeley National Lab, http://www.dhgp.org
CG40448 gene product from transcript CG40448-RC; CG40448-PC; Pp1-Y2-PC
Occludin-Related Y; Annotated by Drosophila Heterochromatin Genome Project, Lawrence Berkeley National Lab, http://www.dhgp.org
ORY-RD; Dmel\\ORY-RD; CG40446-RD; Dmel\\CG40446-RD
CG40446 gene product from transcript CG40446-RD; CG40446-PD; ORY-PD
Coiled-Coils Y; Annotated by Drosophila Heterochromatin Genome Project, Lawrence Berkeley National Lab, http://www.dhgp.org
CCY-RB; Dmel\\CCY-RB; CG45930-RB; Dmel\\CG45930-RB
CG45930 gene product from transcript CG45930-RB; CG45930-PB; CCY-PB