Ensifer sojae CCBAU 05684 plasmid pSJ05684a, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
Multipartite genome sequences of Sinorhizobium species nodulating soybeans
Submitted (29-AUG-2017) College of Biological Sciences, China Agricultural University, Yuanmingyuan Western Road No. 2, Haidian District, Beijing, Beijing 100193, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP023069.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRT Analysis v. 2.3.0\nGenome Coverage :: 130x\nSequencing Technology :: PacBio; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/28/2023 04:01:50\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,768\nCDSs (total) :: 5,703\nGenes (coding) :: 5,453\nCDSs (with protein) :: 5,453\nGenes (RNA) :: 65\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 52\nncRNAs :: 4\nPseudo Genes (total) :: 250\nCDSs (without protein) :: 250\nPseudo Genes (ambiguous residues) :: 0 of 250\nPseudo Genes (frameshifted) :: 126 of 250\nPseudo Genes (incomplete) :: 182 of 250\nPseudo Genes (internal stop) :: 21 of 250\nPseudo Genes (multiple problems) :: 72 of 250\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_010875046.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014858028.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858027.1
COORDINATES: similar to AA sequence:RefSeq:WP_017275348.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014332786.1
GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]; GO:0001072 - transcription antitermination factor activity, RNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010875050.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014330933.1
Type II secretory pathway, component ExeA (predicted ATPase)
COORDINATES: similar to AA sequence:RefSeq:WP_007685991.1
COORDINATES: similar to AA sequence:RefSeq:WP_003501095.1
Site-specific recombinases, DNA invertase Pin homologs
COORDINATES: similar to AA sequence:RefSeq:WP_014330217.1
COORDINATES: similar to AA sequence:RefSeq:WP_014330934.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014330935.1
COORDINATES: similar to AA sequence:RefSeq:WP_009798294.1
COORDINATES: similar to AA sequence:RefSeq:WP_014330937.1
COORDINATES: similar to AA sequence:RefSeq:WP_011749831.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: protein motif:HMM:NF013677.2
COORDINATES: similar to AA sequence:RefSeq:WP_017273650.1
COORDINATES: similar to AA sequence:RefSeq:WP_014857769.1
COORDINATES: similar to AA sequence:RefSeq:WP_013875026.1
COORDINATES: similar to AA sequence:RefSeq:WP_020479656.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014857766.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_007674248.1
COORDINATES: similar to AA sequence:RefSeq:WP_012709013.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012606126.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611883.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015633366.1
GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]
phosphoethanolamine--lipid A transferase
COORDINATES: protein motif:HMM:NF025051.2
COORDINATES: similar to AA sequence:RefSeq:WP_014858087.1
GO:0009055 - electron transfer activity [Evidence IEA]
cytochrome b/b6 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014761898.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003537129.1
COORDINATES: similar to AA sequence:RefSeq:WP_017275278.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015633370.1
COORDINATES: similar to AA sequence:RefSeq:WP_014330854.1
COORDINATES: similar to AA sequence:RefSeq:WP_018210763.1
COORDINATES: similar to AA sequence:RefSeq:WP_013845298.1
COORDINATES: similar to AA sequence:RefSeq:WP_014531058.1
COORDINATES: similar to AA sequence:RefSeq:WP_014531059.1
COORDINATES: similar to AA sequence:RefSeq:WP_015242304.1
COORDINATES: similar to AA sequence:RefSeq:WP_012881317.1
YeeE/YedE thiosulfate transporter family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012650495.1
COORDINATES: similar to AA sequence:RefSeq:WP_014330944.1
COORDINATES: similar to AA sequence:RefSeq:WP_003501082.1
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013953463.1
GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA]
GO:0000373 - Group II intron splicing [Evidence IEA]
group II intron reverse transcriptase/maturase
COORDINATES: similar to AA sequence:RefSeq:WP_007503666.1
COORDINATES: protein motif:HMM:NF024673.2
COORDINATES: similar to AA sequence:RefSeq:WP_011504797.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012335275.1
COORDINATES: similar to AA sequence:RefSeq:WP_013650718.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012650568.1
COORDINATES: similar to AA sequence:RefSeq:WP_015341928.1
COORDINATES: similar to AA sequence:RefSeq:WP_020048105.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014989420.1
COORDINATES: similar to AA sequence:RefSeq:WP_015341926.1
COORDINATES: similar to AA sequence:RefSeq:WP_014857733.1
COORDINATES: similar to AA sequence:RefSeq:WP_014330966.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LuxR C-terminal-related transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017491380.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
amino acid ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018273724.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
GO:0006865 - amino acid transport [Evidence IEA]
ABC-type amino acid transport system, permease component
COORDINATES: similar to AA sequence:RefSeq:WP_014330968.1
ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
COORDINATES: similar to AA sequence:RefSeq:WP_018273722.1
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014330970.1
COORDINATES: similar to AA sequence:RefSeq:WP_014330972.1
COORDINATES: similar to AA sequence:RefSeq:WP_014330973.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases
COORDINATES: similar to AA sequence:RefSeq:WP_018273720.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018273721.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611730.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012706351.1
COORDINATES: similar to AA sequence:RefSeq:WP_014330979.1
GO:0004842 - ubiquitin-protein transferase activity [Evidence IEA]
GO:0016567 - protein ubiquitination [Evidence IEA]
NEL-type E3 ubiquitin ligase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003523548.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019197490.1
COORDINATES: similar to AA sequence:RefSeq:WP_014857718.1
COORDINATES: similar to AA sequence:RefSeq:WP_014497925.1
COORDINATES: similar to AA sequence:RefSeq:WP_011510441.1
COORDINATES: similar to AA sequence:RefSeq:WP_012382967.1
COORDINATES: similar to AA sequence:RefSeq:WP_011971054.1
COORDINATES: similar to AA sequence:RefSeq:WP_018010711.1
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011907855.1
COORDINATES: similar to AA sequence:RefSeq:WP_014328473.1
COORDINATES: similar to AA sequence:RefSeq:WP_032488953.1
COORDINATES: similar to AA sequence:RefSeq:WP_015633424.1
GO:0008234 - cysteine-type peptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF004860.0
COORDINATES: similar to AA sequence:RefSeq:WP_019860319.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875266.1
GO:0008236 - serine-type peptidase activity [Evidence IEA]
prolyl oligopeptidase family serine peptidase
COORDINATES: similar to AA sequence:RefSeq:WP_010875265.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875264.1
COORDINATES: similar to AA sequence:RefSeq:WP_016558830.1
COORDINATES: similar to AA sequence:RefSeq:WP_014328799.1
COORDINATES: similar to AA sequence:RefSeq:WP_012330183.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875263.1
COORDINATES: similar to AA sequence:RefSeq:WP_010967560.1
COORDINATES: similar to AA sequence:RefSeq:WP_007601864.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611261.1
COORDINATES: similar to AA sequence:RefSeq:WP_012559675.1
COORDINATES: similar to AA sequence:RefSeq:WP_018516793.1
COORDINATES: similar to AA sequence:RefSeq:WP_015341813.1
COORDINATES: similar to AA sequence:RefSeq:WP_014857789.1
COORDINATES: similar to AA sequence:RefSeq:WP_019863962.1
COORDINATES: similar to AA sequence:RefSeq:WP_014857716.1
COORDINATES: protein motif:HMM:NF020859.2
Mu transposase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF012925.2
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014857807.1
COORDINATES: similar to AA sequence:RefSeq:WP_011950762.1
carbamoyltransferase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014327878.1
COORDINATES: similar to AA sequence:RefSeq:WP_015934064.1
COORDINATES: similar to AA sequence:RefSeq:WP_011970797.1
COORDINATES: similar to AA sequence:RefSeq:WP_014761245.1
COORDINATES: protein motif:HMM:NF033819.0
COORDINATES: similar to AA sequence:RefSeq:WP_014989244.1
COORDINATES: similar to AA sequence:RefSeq:WP_012477253.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875351.1
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010875353.1
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014858052.1
COORDINATES: similar to AA sequence:RefSeq:WP_020817899.1
COORDINATES: similar to AA sequence:RefSeq:WP_013533378.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010875355.1
COORDINATES: similar to AA sequence:RefSeq:WP_010913829.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010875357.1
GO:0016757 - glycosyltransferase activity [Evidence IEA]
ABC-type multidrug transport system, ATPase component
COORDINATES: similar to AA sequence:RefSeq:WP_015633486.1
nodulation factor ABC transporter ATP-binding protein NodI
ABC-type multidrug transport system, permease component
COORDINATES: similar to AA sequence:RefSeq:WP_010875359.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636983.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875361.1
COORDINATES: similar to AA sequence:RefSeq:WP_004265661.1
COORDINATES: protein motif:HMM:NF012307.2
reverse transcriptase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007753860.1
COORDINATES: similar to AA sequence:RefSeq:WP_017997470.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018098881.1
GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006204698.1
COORDINATES: protein motif:HMM:NF024950.2
COORDINATES: similar to AA sequence:RefSeq:WP_008838317.1
COORDINATES: similar to AA sequence:RefSeq:WP_007605890.1
GO:0008299 - isoprenoid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_026312707.1
COORDINATES: similar to AA sequence:RefSeq:WP_011084944.1
L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases
COORDINATES: similar to AA sequence:RefSeq:WP_015633476.1
GO:0004452 - isopentenyl-diphosphate delta-isomerase activity [Evidence IEA]
type 2 isopentenyl-diphosphate Delta-isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_076611821.1
COORDINATES: similar to AA sequence:RefSeq:WP_011970904.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003584387.1
COORDINATES: similar to AA sequence:RefSeq:WP_017270940.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858092.1
COORDINATES: similar to AA sequence:RefSeq:WP_018327668.1
COORDINATES: similar to AA sequence:RefSeq:WP_018328351.1
COORDINATES: similar to AA sequence:RefSeq:WP_009465831.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636077.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858094.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875345.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858081.1
COORDINATES: similar to AA sequence:RefSeq:WP_010913673.1
COORDINATES: similar to AA sequence:RefSeq:WP_014526622.1
COORDINATES: protein motif:HMM:NF012946.2
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011084703.1
COORDINATES: protein motif:HMM:NF021530.2
COORDINATES: similar to AA sequence:RefSeq:WP_001389365.1
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_043767036.1
COORDINATES: protein motif:HMM:NF018755.2
COORDINATES: similar to AA sequence:RefSeq:WP_014857771.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612306.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611156.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875340.1
GO:0006629 - lipid metabolic process [Evidence IEA]
patatin-like phospholipase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014857747.1
COORDINATES: similar to AA sequence:RefSeq:WP_014857746.1
COORDINATES: similar to AA sequence:RefSeq:WP_014857744.1
COORDINATES: protein motif:HMM:NF018596.2
COORDINATES: similar to AA sequence:RefSeq:WP_014857678.1
radical SAM family RiPP maturation amino acid epimerase
COORDINATES: similar to AA sequence:RefSeq:WP_014857677.1
COORDINATES: similar to AA sequence:RefSeq:WP_004126055.1
nitrogenase stabilizing/protective protein NifW
COORDINATES: similar to AA sequence:RefSeq:WP_014857675.1
GO:0031071 - cysteine desulfurase activity [Evidence IEA]
GO:0006520 - amino acid metabolic process [Evidence IEA]
ABC-type oligopeptide transport system,periplasmic component
COORDINATES: similar to AA sequence:RefSeq:WP_014766591.1
COORDINATES: similar to AA sequence:RefSeq:WP_014331162.1
involved in the transport of C4-dicarboxylates across the membrane; frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015887115.1
COORDINATES: similar to AA sequence:RefSeq:WP_014857667.1
COORDINATES: similar to AA sequence:RefSeq:WP_015633451.1
GO:0010468 - regulation of gene expression [Evidence IEA]
COORDINATES: protein motif:HMM:NF016999.2
COORDINATES: similar to AA sequence:RefSeq:WP_014857660.1
GO:0009399 - nitrogen fixation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014857659.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875166.1
4Fe-4S dicluster domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010875165.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
nitrogenase cofactor biosynthesis protein NifB
COORDINATES: similar to AA sequence:RefSeq:WP_015633448.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0009399 - nitrogen fixation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
nif-specific transcriptional activator NifA
COORDINATES: similar to AA sequence:RefSeq:WP_018517503.1
COORDINATES: similar to AA sequence:RefSeq:WP_003532765.1
COORDINATES: similar to AA sequence:RefSeq:WP_016558441.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]
electron transfer flavoprotein subunit alpha/FixB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010875160.1
electron transfer flavoprotein subunit beta/FixA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014857651.1
iron-sulfur cluster assembly accessory protein
COORDINATES: similar to AA sequence:RefSeq:WP_014857650.1
COORDINATES: similar to AA sequence:RefSeq:WP_014857649.1
GO:0030151 - molybdenum ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014857648.1
GO:0015293 - symporter activity [Evidence IEA]
GO:0006835 - dicarboxylic acid transport [Evidence IEA]
dicarboxylate/amino acid:cation symporter
COORDINATES: similar to AA sequence:RefSeq:WP_014857647.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875154.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010875153.1
COORDINATES: similar to AA sequence:RefSeq:WP_014857644.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_004675840.1
GO:0016611 - iron-iron nitrogenase complex [Evidence IEA]; GO:0016612 - molybdenum-iron nitrogenase complex [Evidence IEA]; GO:0016613 - vanadium-iron nitrogenase complex [Evidence IEA]
GO:0016163 - nitrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003532774.1
GO:0016612 - molybdenum-iron nitrogenase complex [Evidence IEA]
nitrogenase molybdenum-iron protein alpha chain
COORDINATES: similar to AA sequence:RefSeq:WP_006331758.1
nitrogenase molybdenum-iron protein subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_014857642.1
nitrogenase iron-molybdenum cofactor biosynthesis protein NifE
COORDINATES: similar to AA sequence:RefSeq:WP_010913612.1
nitrogenase iron-molybdenum cofactor biosynthesis protein NifN
COORDINATES: similar to AA sequence:RefSeq:WP_016737533.1
GO:0051540 - metal cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010913614.1
NifX-associated nitrogen fixation protein
COORDINATES: similar to AA sequence:RefSeq:WP_010875147.1
Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit
COORDINATES: similar to AA sequence:RefSeq:WP_010875146.1
COORDINATES: protein motif:HMM:NF013936.2
GO:0043169 - cation binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010875145.1
GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010875144.1
COORDINATES: similar to AA sequence:RefSeq:WP_014857631.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875142.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014857627.1
GO:0004400 - histidinol-phosphate transaminase activity [Evidence IEA]
GO:0000105 - histidine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010875140.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611552.1
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_014857619.1
COORDINATES: similar to AA sequence:RefSeq:WP_012755361.1
COORDINATES: similar to AA sequence:RefSeq:WP_014421489.1
COORDINATES: similar to AA sequence:RefSeq:WP_014763930.1
COORDINATES: similar to AA sequence:RefSeq:WP_017277652.1
COORDINATES: similar to AA sequence:RefSeq:WP_007827581.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017267339.1
COORDINATES: similar to AA sequence:RefSeq:WP_017266263.1
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF033516.0
COORDINATES: similar to AA sequence:RefSeq:WP_011427422.1
COORDINATES: similar to AA sequence:RefSeq:WP_041684032.1
COORDINATES: similar to AA sequence:RefSeq:WP_014857614.1
COORDINATES: similar to AA sequence:RefSeq:WP_014857613.1
COORDINATES: similar to AA sequence:RefSeq:WP_014857612.1
COORDINATES: similar to AA sequence:RefSeq:WP_011970376.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611752.1
IS66 family transposase zinc-finger binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003527383.1
COORDINATES: similar to AA sequence:RefSeq:WP_014857607.1
COORDINATES: similar to AA sequence:RefSeq:WP_010967898.1
COORDINATES: similar to AA sequence:RefSeq:WP_015633385.1
COORDINATES: similar to AA sequence:RefSeq:WP_014857603.1
COORDINATES: similar to AA sequence:RefSeq:WP_020051287.1
GO:0004476 - mannose-6-phosphate isomerase activity [Evidence IEA]
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_003520574.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875082.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875083.1
GO:0008446 - GDP-mannose 4,6-dehydratase activity [Evidence IEA]
GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010875084.1
COORDINATES: protein motif:HMM:NF014699.2
GO:0008556 - P-type potassium transmembrane transporter activity [Evidence IEA]
GO:0006813 - potassium ion transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF024092.2
COORDINATES: similar to AA sequence:RefSeq:WP_010875085.1
GO:0004311 - farnesyltranstransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015687465.1
GO:0016767 - geranylgeranyl-diphosphate geranylgeranyltransferase activity [Evidence IEA]
GO:0016117 - carotenoid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010875087.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875088.1
GO:0051007 - squalene-hopene cyclase activity [Evidence IEA]
GO:0019746 - hopanoid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012330260.1
catalyzes conversion of 1-aminocyclopropane-1-carboxylate to ammonia and alpha-ketobutyrate; frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018097467.1
COORDINATES: similar to AA sequence:RefSeq:WP_014857586.1
GO:0001216 - DNA-binding transcription activator activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007536583.1
COORDINATES: similar to AA sequence:RefSeq:WP_014330918.1
COORDINATES: similar to AA sequence:RefSeq:WP_012760358.1
COORDINATES: similar to AA sequence:RefSeq:WP_012706575.1
COORDINATES: protein motif:HMM:NF016674.2
GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
GO:0022900 - electron transport chain [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004119772.1
Molecular chaperone (small heat shock protein)
COORDINATES: similar to AA sequence:RefSeq:WP_018237628.1
COORDINATES: similar to AA sequence:RefSeq:WP_017276605.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0140662 - ATP-dependent protein folding chaperone [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018493252.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]
60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017264700.1
GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0005515 - protein binding [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
GO:0006508 - proteolysis [Evidence IEA]; GO:0006950 - response to stress [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014330279.1
COORDINATES: protein motif:HMM:NF017934.2
COORDINATES: similar to AA sequence:RefSeq:WP_015886709.1
COORDINATES: similar to AA sequence:RefSeq:WP_010661793.1
Transposase and inactivated derivatives, TnpA family
COORDINATES: similar to AA sequence:RefSeq:WP_020326821.1
COORDINATES: protein motif:HMM:NF015505.2
GO:0004197 - cysteine-type endopeptidase activity [Evidence IEA]
YopT-type cysteine protease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014528085.1
COORDINATES: similar to AA sequence:RefSeq:WP_014857579.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875211.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875060.1
IS21-like element ISRsp2 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_012708757.1
IS21-like element ISRsp2 family helper ATPase IstB
COORDINATES: similar to AA sequence:RefSeq:WP_015633401.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875094.1
GO:0009306 - protein secretion [Evidence IEA]
type III secretion system export apparatus subunit SctV
COORDINATES: similar to AA sequence:RefSeq:WP_014857572.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875097.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875098.1
COORDINATES: similar to AA sequence:RefSeq:WP_014857567.1
EscU/YscU/HrcU family type III secretion system export apparatus switch protein
COORDINATES: similar to AA sequence:RefSeq:WP_014857566.1
GO:0030254 - protein secretion by the type III secretion system [Evidence IEA]
type III secretion system export apparatus subunit SctT
COORDINATES: similar to AA sequence:RefSeq:WP_014857565.1
EscS/YscS/HrcS family type III secretion system export apparatus protein
COORDINATES: similar to AA sequence:RefSeq:WP_014857564.1
GO:0030257 - type III protein secretion system complex [Evidence IEA]
type III secretion system export apparatus subunit SctR
COORDINATES: similar to AA sequence:RefSeq:WP_010875103.1
type III secretion system cytoplasmic ring protein SctQ
COORDINATES: similar to AA sequence:RefSeq:WP_014857562.1
Flagellar biosynthesis/type III secretory pathway ATPase
COORDINATES: similar to AA sequence:RefSeq:WP_010875105.1
GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010875106.1
COORDINATES: similar to AA sequence:RefSeq:WP_015633406.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875108.1
COORDINATES: similar to AA sequence:RefSeq:WP_014857557.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875110.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875111.1
type II secretion system effector nodulation protein NopX
COORDINATES: similar to AA sequence:RefSeq:WP_014857553.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010875113.1
COORDINATES: similar to AA sequence:RefSeq:WP_014763148.1
GO:0016765 - transferase activity, transferring alkyl or aryl (other than methyl) groups [Evidence IEA]
GO:0006535 - cysteine biosynthetic process from serine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014857549.1
NAD/NADP octopine/nopaline dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014857548.1
GO:0019290 - siderophore biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014857547.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875118.1
type II secretion system effector nodulation protein NopL
COORDINATES: protein motif:HMM:TIGR02522.1
COORDINATES: similar to AA sequence:RefSeq:WP_014857544.1
type II and III secretion system protein family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010875121.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010875122.1
COORDINATES: similar to AA sequence:RefSeq:WP_003601684.1
COORDINATES: similar to AA sequence:RefSeq:WP_003537795.1
COORDINATES: protein motif:HMM:NF016693.2
COORDINATES: protein motif:HMM:NF022540.2
exopolysaccharide production repressor protein
COORDINATES: similar to AA sequence:RefSeq:WP_010875125.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875126.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875127.1
COORDINATES: similar to AA sequence:RefSeq:WP_013533497.1
COORDINATES: similar to AA sequence:RefSeq:WP_018240696.1
COORDINATES: similar to AA sequence:RefSeq:WP_006699239.1
COORDINATES: similar to AA sequence:RefSeq:WP_012706579.1
COORDINATES: protein motif:HMM:NF022517.2
COORDINATES: similar to AA sequence:RefSeq:WP_012336521.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612363.1
COORDINATES: protein motif:HMM:NF036442.2
COORDINATES: similar to AA sequence:RefSeq:WP_012976703.1
COORDINATES: similar to AA sequence:RefSeq:WP_071831742.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875417.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875418.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875419.1
autoinducer binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010875420.1
IncP-type conjugal transfer protein TrbI
COORDINATES: similar to AA sequence:RefSeq:WP_020048152.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427455.1
GO:0009291 - unidirectional conjugation [Evidence IEA]
P-type conjugative transfer protein TrbG
COORDINATES: similar to AA sequence:RefSeq:WP_018482029.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875424.1
P-type conjugative transfer protein TrbL
COORDINATES: similar to AA sequence:RefSeq:WP_014858036.1
GO:0009292 - horizontal gene transfer [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018210390.1
P-type conjugative transfer protein TrbJ
COORDINATES: similar to AA sequence:RefSeq:WP_018098144.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858033.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875429.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858032.1
COORDINATES: similar to AA sequence:RefSeq:WP_004129936.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858030.1
GO:0061579 - N-acyl homoserine lactone synthase activity [Evidence IEA]