Waddlia chondrophila WSU 86-1044 plasmid pWc, complete sequence.
type: Entry
definition: Waddlia chondrophila WSU 86-1044 plasmid pWc, complete sequence.
sequence version: NC_014226.1
sequence date: 2023-03-12
sequence: sequence
division: CON
label: NC_014226.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02603402
keyword: RefSeq
source: Waddlia chondrophila WSU 86-1044
organism: Waddlia chondrophila WSU 86-1044
taxonomy: Bacteria; Chlamydiota; Chlamydiia; Parachlamydiales; Waddliaceae; Waddlia.
reference: 1
references: 20531937
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP001929.1.\nSource DNA is available from Gilbert Greub: Gilbert.Greub@chuv.ch\nBacteria is available from ATCC collection: ATCC number VR-1470.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/12/2023 11:24:50\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,936\nCDSs (total) :: 1,890\nGenes (coding) :: 1,872\nCDSs (with protein) :: 1,872\nGenes (RNA) :: 46\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 37\nncRNAs :: 3\nPseudo Genes (total) :: 18\nCDSs (without protein) :: 18\nPseudo Genes (ambiguous residues) :: 0 of 18\nPseudo Genes (frameshifted) :: 4 of 18\nPseudo Genes (incomplete) :: 16 of 18\nPseudo Genes (internal stop) :: 1 of 18\nPseudo Genes (multiple problems) :: 2 of 18\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 15593
topology: circular
so has quality: SO_0000988
location: 1..15593
location: region:1-15593:1
RO_0002162: 716544

NC_014226
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02603402
type: BioSample
SIO_000068: biosample

1
title: The Waddlia genome: a window into chlamydial biology
author: Bertelli, C.
author: Collyn, F.
author: Croxatto, A.
author: Ruckert, C.
author: Polkinghorne, A.
author: Kebbi-Beghdadi, C.
author: Goesmann, A.
author: Vaughan, L.
author: Greub, G.
journal: PLoS One 5 (5), e10890 (2010)
pubmed: 20531937
comments: Publication Status: Online-Only

20531937
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Bertelli, C.
author: Greub, G.
journal: Submitted (09-FEB-2010) Institute of Microbiology, University Hospital Center and University of Lausanne, Bugnon 48, Lausanne VD 1011, Switzerland

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15593:1
position: 15593
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15593:1:source
so part of: sequence
organism: Waddlia chondrophila WSU 86-1044
mol type: genomic DNA
strain: WSU 86-1044
culture collection: ATCC:VR-1470
type material: type strain of Waddlia chondrophila
plasmid: pWc

716544
type: Taxonomy
SIO_000068: taxonomy

WCW_RS09490
type: Gene
subclass of: SO_0000704
RO_0002162: 716544
locus tag: WCW_RS09490
old locus tag: wcw_p0001
so part of: sequence
location: 410..1372
location: region:410-1372:1
so has part: feature:410-1372:1:exon
subclass of: SO_0000010

position:410:1
position: 410
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1372:1
position: 1372
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:410-1372:1:exon

WCW_RS09490
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 716544
locus tag: WCW_RS09490
old locus tag: wcw_p0001
inference: COORDINATES: protein motif:HMM:NF012798.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tyrosine-type recombinase/integrase
translation: MTLEVVQEHKIESQAQAKSLRDKIAWQKMEMLSLDSIIVEWLETLSERTKVNYKSGISKLTELGIINPFISLQSFSLVNHDAAIDRIKQLPDLKETTKQARAALYISFTRYLSRRFKGMFSKATPSREGNEKTFFRVHEKVVTEAMNLQQWTAFFEELEKLNIRDALIGKIALQGGKRIREVLSLHSEQIDWKKREITFHQSKTRGVSKQTIITYSESIMKQLKDLLGEGEGYLFITTTGNVVMLTQISRNFARAGKAAKIPFKVTPHVLRASAVTYLKQQGFSDSDIMKITGHSSGEMIRAYDKSERADNPTKRVNLVM
SIO_010081: WCW_RS09490
subclass of: SO_0000673
so part of: WCW_RS09490
location: 410..1372
location: region:410-1372:1
so has part: feature:410-1372:1:exon

WP_143876415.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:410-1372:1:exon

WCW_RS09500
type: Gene
subclass of: SO_0000704
RO_0002162: 716544
locus tag: WCW_RS09500
old locus tag: wcw_p0003
so part of: sequence
location: 1775..2104
location: region:1775-2104:1
so has part: feature:1775-2104:1:exon
subclass of: SO_0000010

position:1775:1
position: 1775
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2104:1
position: 2104
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1775-2104:1:exon

WCW_RS09500
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 716544
locus tag: WCW_RS09500
old locus tag: wcw_p0003
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGKIKTSSKHQTYLENLSKVDLDRVSGLHKAEPLKDLTDDRQISMAVFECLLNNDPEGAMEVIEIYLEAMNKAKMRRKTKLPKSTMYSALKHRNPTIKTLAKIMYSSTH
SIO_010081: WCW_RS09500
subclass of: SO_0000673
so part of: WCW_RS09500
location: 1775..2104
location: region:1775-2104:1
so has part: feature:1775-2104:1:exon

WP_013183007.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1775-2104:1:exon

WCW_RS09505
type: Gene
subclass of: SO_0000704
RO_0002162: 716544
locus tag: WCW_RS09505
so part of: sequence
location: 2374..2682
location: region:2374-2682:1
so has part: feature:2374-2682:1:exon
subclass of: SO_0000010

position:2374:1
position: 2374
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2682:1
position: 2682
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2374-2682:1:exon

WCW_RS09505
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 716544
locus tag: WCW_RS09505
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKFILITFLLIKSSFVFATIIDYKEKSIPLSVFDYKLDKFNDRHFEKYNKYRKSNSKNNELSKALSYVNYVEANNGNCASKIVLSIELTPLFHLLDVNEKR
SIO_010081: WCW_RS09505
subclass of: SO_0000673
so part of: WCW_RS09505
location: 2374..2682
location: region:2374-2682:1
so has part: feature:2374-2682:1:exon

WP_041941967.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2374-2682:1:exon

WCW_RS09510
type: Gene
subclass of: SO_0000704
RO_0002162: 716544
locus tag: WCW_RS09510
old locus tag: wcw_p0005
so part of: sequence
location: complement(2685..3415)
location: region:2685-3415:-1
so has part: feature:2685-3415:-1:exon
subclass of: SO_0000010

position:2685:-1
position: 2685
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3415:-1
position: 3415
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2685-3415:-1:exon

WCW_RS09510
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 716544
locus tag: WCW_RS09510
old locus tag: wcw_p0005
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611815.1
ribosomal slippage: true
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS1 family transposase
translation: MNPSCPKCESTAVKKNGHIHNGKQNHRCLVCGRQFVLDPQQKIITDQTKSEVRQALLERVSLEGICRIFSVSMPWLLSFIQQIIYELPDDLNATVVKDYKDFEVAIIELDEQWSYVGNKKNQQWLWLAFHSASRQVLAMHVGKRDKRAAEALLAKLPEDLKKKPFFYSDKFSVYYEVLPWKQHQAVGKNSGKTSYIERFNNTLRQRCSRLVRKTLSFSKKLANHIGMIQYFICDYNKRMALLV
SIO_010081: WCW_RS09510
subclass of: SO_0000673
so part of: WCW_RS09510
location: complement(join(2685..2926,2926..3415))
location: region:2685-3415:-1
so has part: feature:2926-3415:-1:exon
so has part: feature:2685-2926:-1:exon

WP_227738806.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2926-3415:-1:exon

position:2926:-1
position: 2926
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2685-2926:-1:exon

WCW_RS09515
type: Gene
subclass of: SO_0000704
RO_0002162: 716544
locus tag: WCW_RS09515
old locus tag: wcw_p0006
so part of: sequence
location: 3434..3799
location: region:3434-3799:1
so has part: feature:3434-3799:1:exon
subclass of: SO_0000010

position:3434:1
position: 3434
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3799:1
position: 3799
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3434-3799:1:exon

WCW_RS09515
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 716544
locus tag: WCW_RS09515
old locus tag: wcw_p0006
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAEYETLNFHQCQTNFDLSITCLGLPEKTKFTDIIINDIFRDLQRDVSIEIEKKHLFGKITWMAFSNTLRKSYDIEVTVEKGRITDAKQNTSDYTENMIKKELIDLHGHIMIQCQFKKSVE
SIO_010081: WCW_RS09515
subclass of: SO_0000673
so part of: WCW_RS09515
location: 3434..3799
location: region:3434-3799:1
so has part: feature:3434-3799:1:exon

WP_013183008.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3434-3799:1:exon

WCW_RS09520
type: Gene
subclass of: SO_0000704
RO_0002162: 716544
locus tag: WCW_RS09520
old locus tag: wcw_p0007
so part of: sequence
location: complement(3834..4070)
location: region:3834-4070:-1
so has part: feature:3834-4070:-1:exon
subclass of: SO_0000010

position:3834:-1
position: 3834
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4070:-1
position: 4070
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3834-4070:-1:exon

WCW_RS09520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 716544
locus tag: WCW_RS09520
old locus tag: wcw_p0007
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006342651.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MSKETHNRKKTPIRKAFGLKVRMRRFEIGITQEELAEKADLHPTYVGSVERGERNIALENIVAIAKGLGCSPKDLMPE
SIO_010081: WCW_RS09520
subclass of: SO_0000673
so part of: WCW_RS09520
location: complement(3834..4070)
location: region:3834-4070:-1
so has part: feature:3834-4070:-1:exon

WP_013183009.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3834-4070:-1:exon

WCW_RS09525
type: Gene
subclass of: SO_0000704
RO_0002162: 716544
locus tag: WCW_RS09525
old locus tag: wcw_p0008
so part of: sequence
location: 4222..5112
location: region:4222-5112:1
so has part: feature:4222-5112:1:exon
subclass of: SO_0000010

position:4222:1
position: 4222
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5112:1
position: 5112
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4222-5112:1:exon

WCW_RS09525
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 716544
locus tag: WCW_RS09525
old locus tag: wcw_p0008
inference: COORDINATES: protein motif:HMM:NF024206.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ankyrin repeat domain-containing protein
translation: MKKLFLIFAIGIMSLTLNLKANQIDYETIQKIEEYMSNEKGWHPLNYAIEMDDYKTALIICEYSEKVNTVDDGFNPINRIFHRTCRKINLSTPIKNRPKLSEEALELVWAILDKGINVNYVPLNCGLPPSGNSSSSFIYICFLGLEDLFYEFIHRRVDINQRKGSPLATAIRAGHMNIVQSLIEEGANANWWALHQAVSSKNFEAINILLQAGADINEIDLLMSAIFHHKKIGHYLDGLPMLRFLLEMGANPNAIAMGKKDPILKVVLTMPADTVEQQNYKTDVINTLIEYGAVLY
SIO_010081: WCW_RS09525
subclass of: SO_0000673
so part of: WCW_RS09525
location: 4222..5112
location: region:4222-5112:1
so has part: feature:4222-5112:1:exon

WP_013183010.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4222-5112:1:exon

WCW_RS09530
type: Gene
subclass of: SO_0000704
RO_0002162: 716544
locus tag: WCW_RS09530
old locus tag: wcw_p0009
so part of: sequence
location: complement(5113..5613)
location: region:5113-5613:-1
so has part: feature:5113-5613:-1:exon
subclass of: SO_0000010

position:5113:-1
position: 5113
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5613:-1
position: 5613
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5113-5613:-1:exon

WCW_RS09530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 716544
locus tag: WCW_RS09530
old locus tag: wcw_p0009
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNIHAELSAFNNLRSQTEESAGQILWIEFKMRYLAERSQKIVFELEKITESKKEDQKYYWNCKLDDLLKAIRIAFHDQLSEKETDNLQQYQMVRNRFLHSNFVDALKKLNLSTGGRQMLRNGERVPLDRSEIGESLKALHTNRGVRAIRDLTNSVEELLDRLLKIE
SIO_010081: WCW_RS09530
subclass of: SO_0000673
so part of: WCW_RS09530
location: complement(5113..5613)
location: region:5113-5613:-1
so has part: feature:5113-5613:-1:exon

WP_041941968.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5113-5613:-1:exon

WCW_RS09535
type: Gene
subclass of: SO_0000704
RO_0002162: 716544
locus tag: WCW_RS09535
old locus tag: wcw_p0010
so part of: sequence
location: complement(5649..5867)
location: region:5649-5867:-1
so has part: feature:5649-5867:-1:exon
subclass of: SO_0000010

position:5649:-1
position: 5649
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5867:-1
position: 5867
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5649-5867:-1:exon

WCW_RS09535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 716544
locus tag: WCW_RS09535
old locus tag: wcw_p0010
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNRTNKNRISKLESGITEVGRHKSALVIYDPNVDYEKDLAKIDADVVLALPDNGRKDLKNGVVIGSCVVSYC
SIO_010081: WCW_RS09535
subclass of: SO_0000673
so part of: WCW_RS09535
location: complement(5649..5867)
location: region:5649-5867:-1
so has part: feature:5649-5867:-1:exon

WP_013183012.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5649-5867:-1:exon

WCW_RS09540
type: Gene
subclass of: SO_0000704
RO_0002162: 716544
locus tag: WCW_RS09540
old locus tag: wcw_p0011
so part of: sequence
location: complement(5864..6301)
location: region:5864-6301:-1
so has part: feature:5864-6301:-1:exon
subclass of: SO_0000010

position:5864:-1
position: 5864
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6301:-1
position: 6301
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5864-6301:-1:exon

WCW_RS09540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 716544
locus tag: WCW_RS09540
old locus tag: wcw_p0011
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006340683.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF5681 domain-containing protein
translation: MPENAGKKQGNTRFRKGQSGNPCGKAKGTKNKATLAAEVLLEGELEGICRSLIAQAREGNIQAIKLVLDRVLPPKRNPTVSIELPQLKSSSDALEAITSITQAVGNGEISPAEGETLSRIVDVYVKALEAHDFENRLNILEEKGK
SIO_010081: WCW_RS09540
subclass of: SO_0000673
so part of: WCW_RS09540
location: complement(5864..6301)
location: region:5864-6301:-1
so has part: feature:5864-6301:-1:exon

WP_041941969.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5864-6301:-1:exon

WCW_RS09545
type: Gene
subclass of: SO_0000704
RO_0002162: 716544
locus tag: WCW_RS09545
old locus tag: wcw_p0013
so part of: sequence
location: complement(6724..8682)
location: region:6724-8682:-1
so has part: feature:6724-8682:-1:exon
subclass of: SO_0000010

position:6724:-1
position: 6724
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8682:-1
position: 8682
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6724-8682:-1:exon

WCW_RS09545
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 716544
locus tag: WCW_RS09545
old locus tag: wcw_p0013
inference: COORDINATES: protein motif:HMM:TIGR01613.1
GO function: GO:0003896 - DNA primase activity [Evidence IEA]
GO process: GO:0006260 - DNA replication [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA primase family protein
translation: MNNNNLKTEDNQEAKEEISLEKNAFKIKSKGKSKLKFTPSIKKELKDVIGCQYVDILSAYVCPLGSKTEVSNLLEKNKINADLVEFHNPLPKKSKKINGMETRLHILEKEVHKEDMELLVEAHKMKDEEGRHKSIQDFKDPPKEPGKDEKSGDLRYRIELDLHERFKANDEKRKEAEELRRYVEQHEKEKTENEKVLERLNKNESGDAEIFVELFEKKYLFDPTEGKNGAFYLWDGCQWTLDIHKERYKDFEKVSDTYLIATSDESIDESVSKELFKRSQQLRTSRRRSNVLETVSAYLSFKHSWDYCPNKLPCSNGIINLKTGDLETAQRENYIKKVCPTSYEKNANCPKFLKFLDDITLGDKELSSFIGRVIGYALLGVPKEEKIFYFYGNGRNGKGTLMHVIQHVLGALSKTFPSEMLLSQRNPPSSSSPNPELANLEGVRMAVFSEINEGRKIDSAKVKNLSGRDIIPCRRLYSNVDLQITPTHTMILQTNYKPKAPSEDKALWSRNILIPFKARFVKEPKDGENEREIKESLKDELLEEAKGILKWMVDGCLEYQEIGLKVPQSVIDQTEGYRKENDGIGCFLEEMCFQDPAVSTQKSKMEAAIKNYCKANEMKEPTRNEISDYLKIRFKEGRKSQGSYWKGIKIED
SIO_010081: WCW_RS09545
subclass of: SO_0000673
so part of: WCW_RS09545
location: complement(6724..8682)
location: region:6724-8682:-1
so has part: feature:6724-8682:-1:exon

WP_143876416.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6724-8682:-1:exon

WCW_RS09840
type: Gene
subclass of: SO_0000704
RO_0002162: 716544
locus tag: WCW_RS09840
old locus tag: wcw_p0014
so part of: sequence
location: complement(8747..10324)
location: region:8747-10324:-1
so has part: feature:8747-10324:-1:exon
subclass of: SO_0000010

position:8747:-1
position: 8747
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10324:-1
position: 10324
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8747-10324:-1:exon

WCW_RS09840
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 716544
locus tag: WCW_RS09840
old locus tag: wcw_p0014
inference: COORDINATES: protein motif:HMM:NF012492.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DEAD/DEAH box helicase
translation: MLTLRKYQRECLDAIASNYKNGNCRQLVSLPTASGKTVVFASLIKEFEGKSLVLAHTNELLEQAREKIQMIAPNLSVGLVNADSKEFDFPVIVSSIQSARQPNNLVELQAQNFKLLVYDECHHAASKTSRNILNALGFGCKTDRLLCGFTATAFRQDGKGLKEVFDTVAYQRTIKEMIEEGYLCPPKGIKVSTDIDLSKVKMGDGDFQAESLAKVMDIPEIRQIVFDAYQKEGEGRQTICFGVNIQHAYNLSCLFNCCGISSDTIHGRMSKSERESVLKRYRSGQIQVLCNCQVLTEGFDAPETSCVIVARPTQSKGLYQQMAGRGLRLYPNKRDCIIIDLCAKHHGLCNTVTLLEDSEKINEVEKLEKSDQPGLVESFPANLNQKLKAALIRFDPLGQEFTWTCNESNIYVLKGDNIRLGIVPINKDRYRVVLASEKGSQTISDDLNFEYSFAVAEDFARSNRDVFIVSDREAKWRNFPASAKQIALIRSKGYRAGLDKLTRGQASDIISSGTLRGGSGCYVEK
SIO_010081: WCW_RS09840
subclass of: SO_0000673
so part of: WCW_RS09840
location: complement(8747..10324)
location: region:8747-10324:-1
so has part: feature:8747-10324:-1:exon

WP_013183016.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8747-10324:-1:exon

WCW_RS09555
type: Gene
subclass of: SO_0000704
RO_0002162: 716544
locus tag: WCW_RS09555
old locus tag: wcw_p0015
so part of: sequence
location: complement(10318..10977)
location: region:10318-10977:-1
so has part: feature:10318-10977:-1:exon
subclass of: SO_0000010

position:10318:-1
position: 10318
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10977:-1
position: 10977
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10318-10977:-1:exon

WCW_RS09555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 716544
locus tag: WCW_RS09555
old locus tag: wcw_p0015
inference: COORDINATES: protein motif:HMM:NF025107.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MNSTKEDIEHFKNLYPMLTPTQQKIWNYLHWFCRNYRVVKPSHKHIAEKVGCHRDTVIQAIKKFSELGWLMTLKKAWRTCTYFISEHLLRLDPTKKDTFRRDPPKPENPPNPTQDPTVNPTHINSSSNYNRNVRDDNVQHTGNYSEEEPIPYEIRNLPVSQKDKRLLSKYGLHVLRLAIEDFVTYQRLYRVRNVAAFITSRCKAYVQKFRTQPKSGVAC
SIO_010081: WCW_RS09555
subclass of: SO_0000673
so part of: WCW_RS09555
location: complement(10318..10977)
location: region:10318-10977:-1
so has part: feature:10318-10977:-1:exon

WP_013183017.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10318-10977:-1:exon

WCW_RS09560
type: Gene
subclass of: SO_0000704
RO_0002162: 716544
locus tag: WCW_RS09560
old locus tag: wcw_p0016
so part of: sequence
location: complement(10977..11270)
location: region:10977-11270:-1
so has part: feature:10977-11270:-1:exon
subclass of: SO_0000010

position:11270:-1
position: 11270
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10977-11270:-1:exon

WCW_RS09560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 716544
locus tag: WCW_RS09560
old locus tag: wcw_p0016
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLETLSQEQNTQTTSPTEGFIAKIRKMLDAIPSEFVQPKHLHELGFFGSHSAATHFVQDGGIPHVRISPYRILIQKEDVLAFLKEKYRQKSKKVGGE
SIO_010081: WCW_RS09560
subclass of: SO_0000673
so part of: WCW_RS09560
location: complement(10977..11270)
location: region:10977-11270:-1
so has part: feature:10977-11270:-1:exon

WP_013183018.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10977-11270:-1:exon

WCW_RS09565
type: Gene
subclass of: SO_0000704
RO_0002162: 716544
locus tag: WCW_RS09565
old locus tag: wcw_p0017
so part of: sequence
location: complement(11601..12521)
location: region:11601-12521:-1
so has part: feature:11601-12521:-1:exon
subclass of: SO_0000010

position:11601:-1
position: 11601
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12521:-1
position: 12521
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11601-12521:-1:exon

WCW_RS09565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 716544
locus tag: WCW_RS09565
old locus tag: wcw_p0017
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: phage integrase family protein
translation: MVLDPVKPGKEMSTKDIGRFLEENKSGFCSSELLKCVLLNIPITVAVKEWLATIENPDTKRKYKKAMERIFALEPLSDVTKRNCAITTLDKNWSGAVGIYKLMEEIEAPESAIKTCQSVFSRFCDFIRIATLGIVDPEETPKQKEDYYAVSILYENTDWEEFISSMRTPFNLLAEMTFLAAKSCELRLRLANSKKNILSLDTSQINFQNNTISFKSEQSYQVTDILGHPLCIPFTESFMKKLKDYIGERKGVVFLSKKNKPLFATQVQREFKKASKNLPNEITPVMLGWAGVLAYKEKSKKKFPFK
SIO_010081: WCW_RS09565
subclass of: SO_0000673
so part of: WCW_RS09565
location: complement(11601..12521)
location: region:11601-12521:-1
so has part: feature:11601-12521:-1:exon

WP_162268183.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11601-12521:-1:exon

WCW_RS09570
type: Gene
subclass of: SO_0000704
RO_0002162: 716544
locus tag: WCW_RS09570
old locus tag: wcw_p0018
so part of: sequence
location: complement(12586..12885)
location: region:12586-12885:-1
so has part: feature:12586-12885:-1:exon
subclass of: SO_0000010

position:12586:-1
position: 12586
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12885:-1
position: 12885
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12586-12885:-1:exon

WCW_RS09570
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 716544
locus tag: WCW_RS09570
old locus tag: wcw_p0018
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSKKAKLSQLHKELTTLNKTESKVEAKTETRNAQKKTSIGANPLRGERGDFLKVTITLPPGMLADLKRLGLERKLQGMKDTDVSSLIRESLTTFLESQE
SIO_010081: WCW_RS09570
subclass of: SO_0000673
so part of: WCW_RS09570
location: complement(12586..12885)
location: region:12586-12885:-1
so has part: feature:12586-12885:-1:exon

WP_013183020.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12586-12885:-1:exon

WCW_RS09575
type: Gene
subclass of: SO_0000704
RO_0002162: 716544
locus tag: WCW_RS09575
old locus tag: wcw_p0019
so part of: sequence
location: complement(12898..13554)
location: region:12898-13554:-1
so has part: feature:12898-13554:-1:exon
subclass of: SO_0000010

position:12898:-1
position: 12898
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13554:-1
position: 13554
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12898-13554:-1:exon

WCW_RS09575
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 716544
locus tag: WCW_RS09575
old locus tag: wcw_p0019
inference: COORDINATES: protein motif:HMM:NF013793.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MKTIISCLNLKGGCGKSSTIVNLGGVFSENKKKPLLIDLDEQQSSTHWARQGGDKFPFPVIPLSIETAGKVKSEIERLANEHKADTILIDTPPQLEDDALITALLSDIVLIPVSPSPLDLWAAQQAVNTIKDAREERGGKLPKAILIPSRVMNRTTLAKDIKGSLKAFGEPISPAISLRVAIAEAAIAGLPIGHYAPNSPGHKEFTNLWKFVNSQIRK
SIO_010081: WCW_RS09575
subclass of: SO_0000673
so part of: WCW_RS09575
location: complement(12898..13554)
location: region:12898-13554:-1
so has part: feature:12898-13554:-1:exon

WP_013183021.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12898-13554:-1:exon

WCW_RS09580
type: Gene
subclass of: SO_0000704
RO_0002162: 716544
locus tag: WCW_RS09580
old locus tag: wcw_p0020
so part of: sequence
location: 13828..14394
location: region:13828-14394:1
so has part: feature:13828-14394:1:exon
subclass of: SO_0000010

position:13828:1
position: 13828
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14394:1
position: 14394
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13828-14394:1:exon

WCW_RS09580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 716544
locus tag: WCW_RS09580
old locus tag: wcw_p0020
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRKFLVLSAIFVLASSHSFAANKVYTIGEIFGIVADDQEWSCEVVSVENSGLIGNDYGNLFVQGSSKNHPVSFDFFHTMHRIKNWTDNPHPHLERILKNYTNCSNTILLNWKIKQCSWSKIIVEGDYLDNSKVGYFQLFSEFEPTAFMYDDIKKPVFNLLIKIESEFMDEETLQFYYDSVKPLKKRLY
SIO_010081: WCW_RS09580
subclass of: SO_0000673
so part of: WCW_RS09580
location: 13828..14394
location: region:13828-14394:1
so has part: feature:13828-14394:1:exon

WP_041941971.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13828-14394:1:exon

WCW_RS09585
type: Gene
subclass of: SO_0000704
RO_0002162: 716544
locus tag: WCW_RS09585
old locus tag: wcw_p0021
so part of: sequence
location: 14489..14734
location: region:14489-14734:1
so has part: feature:14489-14734:1:exon
subclass of: SO_0000010

position:14489:1
position: 14489
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14734:1
position: 14734
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14489-14734:1:exon

WCW_RS09585
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 716544
locus tag: WCW_RS09585
old locus tag: wcw_p0021
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013182277.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAQTARISRRSDSIIQEMVSLTGYSKVEVIEHALETYRRNERMRLMNEAYQTLKSDKSAWEEELKDREELEGTIADGFEEE
SIO_010081: WCW_RS09585
subclass of: SO_0000673
so part of: WCW_RS09585
location: 14489..14734
location: region:14489-14734:1
so has part: feature:14489-14734:1:exon

WP_013183023.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14489-14734:1:exon

WCW_RS09590
type: Gene
subclass of: SO_0000704
RO_0002162: 716544
locus tag: WCW_RS09590
old locus tag: wcw_p0022
so part of: sequence
location: 14715..15080
location: region:14715-15080:1
so has part: feature:14715-15080:1:exon
subclass of: SO_0000010

position:14715:1
position: 14715
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15080:1
position: 15080
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14715-15080:1:exon

WCW_RS09590
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 716544
locus tag: WCW_RS09590
old locus tag: wcw_p0022
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013182276.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system PemK/MazF family toxin
translation: MALKKNNPLQGEVWLFDPDPVKGNEIGKKVRPALVVSNNLMNKGVSGLIIIVPITSKDKKIPSHIRIEPPEGGVNLPSFAVCEQVRSISKSRLVKRLGKVQSATVLKEVGSWLNDLLWIDI
SIO_010081: WCW_RS09590
subclass of: SO_0000673
so part of: WCW_RS09590
location: 14715..15080
location: region:14715-15080:1
so has part: feature:14715-15080:1:exon

WP_013183024.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14715-15080:1:exon

WCW_RS09595
type: Gene
subclass of: SO_0000704
RO_0002162: 716544
locus tag: WCW_RS09595
so part of: sequence
location: complement(15193..15558)
location: region:15193-15558:-1
so has part: feature:15193-15558:-1:exon
subclass of: SO_0000010

position:15193:-1
position: 15193
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15558:-1
position: 15558
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15193-15558:-1:exon

WCW_RS09595
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 716544
locus tag: WCW_RS09595
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNLEKGISRIGIVFGVICGCTLIFLAWKTDLYFNLLSHFDFKYEENHTHLYNTGEIVEISGFKILRQIRITNEDAPSKLMHIVLPKVGTVLGVSIALFLSGFYLIKGVFETINWVIRGFRG
SIO_010081: WCW_RS09595
subclass of: SO_0000673
so part of: WCW_RS09595
location: complement(15193..15558)
location: region:15193-15558:-1
so has part: feature:15193-15558:-1:exon

WP_041941972.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15193-15558:-1:exon