Helicoverpa zea isolate HzStark_Cry1AcR chromosome 15, ilHelZeax1.1, whole genome shotgun sequence.
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
REFSEQ INFORMATION: The reference sequence is identical to\nCM040217.1.\nAssembly name: ilHelZeax1.1\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the United States Department of\nAgriculture on 2022/03/18. The original whole-genome shotgun\nproject has the accession JAKYJW000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: United States Department of Agriculture\nAssembly Date :: 31-DEC-2021\nAssembly Method :: FALCON v. 1.8.1; FALCON-Unzip v. 1.3.7;\n purge_dups v. 1.2.5; bwa-mem v. 2.2.1;\n Juicebox v. 1.11.08; Arrow gcpp v. 2.0.2;\n FreeBayes v. 1.0.2; Merqury v. 1.1\nAssembly Name :: ilHelZeax1.1\nDiploid :: Principal Pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 144x\nSequencing Technology :: PacBio Sequel II CLR; Illumina NovaSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Helicoverpa zea Annotation Release\n 100\nAnnotation Version :: 100\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 9.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##
laboratory colony at USDA ARS Southern Insect Management Unit, Stoneville, MS
USDA-ARS Genetics and Sustainability Agricultural Research Unit, Starkville, MS, USA
Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 58% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
poly(U)-binding-splicing factor half pint, transcript variant X1
COORDINATES: polyA evidence [ECO:0006239]
poly(U)-binding-splicing factor half pint, transcript variant X2
poly(U)-binding-splicing factor half pint
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 93% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA isoleucine (anticodon UAU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
phosphate carrier protein, mitochondrial-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 53 Proteins, and 6% coverage of the annotated genomic feature by RNAseq alignments
snRNA-activating protein complex subunit 3, transcript variant X2
snRNA-activating protein complex subunit 3, transcript variant X1
snRNA-activating protein complex subunit 3
immediate early response 3-interacting protein 1
zinc finger RNA-binding protein, transcript variant X1
zinc finger RNA-binding protein, transcript variant X2
zinc finger RNA-binding protein, transcript variant X8
zinc finger RNA-binding protein, transcript variant X4
zinc finger RNA-binding protein, transcript variant X9
zinc finger RNA-binding protein, transcript variant X3
zinc finger RNA-binding protein, transcript variant X7
zinc finger RNA-binding protein, transcript variant X5
zinc finger RNA-binding protein, transcript variant X11
zinc finger RNA-binding protein, transcript variant X6
zinc finger RNA-binding protein, transcript variant X10
zinc finger RNA-binding protein isoform X1
zinc finger RNA-binding protein isoform X2
zinc finger RNA-binding protein isoform X8
zinc finger RNA-binding protein isoform X4
zinc finger RNA-binding protein isoform X9
zinc finger RNA-binding protein isoform X3
zinc finger RNA-binding protein isoform X7
zinc finger RNA-binding protein isoform X5
zinc finger RNA-binding protein isoform X11
zinc finger RNA-binding protein isoform X10
zinc finger RNA-binding protein isoform X6
poly(A) RNA polymerase gld-2 homolog A-like, transcript variant X1
poly(A) RNA polymerase gld-2 homolog A-like, transcript variant X2
poly(A) RNA polymerase gld-2 homolog A-like isoform X2
poly(A) RNA polymerase gld-2 homolog A-like isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
neither inactivation nor afterpotential protein G
probable ribosome biogenesis protein RLP24
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns
uncharacterized LOC124636819, transcript variant X3
uncharacterized LOC124636819, transcript variant X5
uncharacterized LOC124636819, transcript variant X4
uncharacterized LOC124636819, transcript variant X2
uncharacterized protein LOC124636819 isoform X2
uncharacterized protein LOC124636819 isoform X3
uncharacterized LOC124636819, transcript variant X1
uncharacterized protein LOC124636819 isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 86% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 54% coverage of the annotated genomic feature by RNAseq alignments
bumetanide-sensitive sodium-(potassium)-chloride cotransporter, transcript variant X2
bumetanide-sensitive sodium-(potassium)-chloride cotransporter, transcript variant X1
bumetanide-sensitive sodium-(potassium)-chloride cotransporter, transcript variant X3
bumetanide-sensitive sodium-(potassium)-chloride cotransporter isoform X2
bumetanide-sensitive sodium-(potassium)-chloride cotransporter isoform X1
bumetanide-sensitive sodium-(potassium)-chloride cotransporter isoform X3
uncharacterized LOC124636844, transcript variant X1
uncharacterized LOC124636844, transcript variant X2
uncharacterized LOC124636844, transcript variant X3
uncharacterized protein LOC124636844 isoform X1
uncharacterized protein LOC124636844 isoform X3
uncharacterized protein LOC124636844 isoform X2
arrestin domain-containing protein 17-like
arrestin domain-containing protein 2-like
mitochondrial import inner membrane translocase subunit TIM50-C, transcript variant X1
mitochondrial import inner membrane translocase subunit TIM50-C, transcript variant X2
mitochondrial import inner membrane translocase subunit TIM50-C isoform X1
mitochondrial import inner membrane translocase subunit TIM50-C isoform X2
sorbitol dehydrogenase-like, transcript variant X1
sorbitol dehydrogenase-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments
ral GTPase-activating protein subunit beta, transcript variant X4
ral GTPase-activating protein subunit beta, transcript variant X2
ral GTPase-activating protein subunit beta, transcript variant X3
ral GTPase-activating protein subunit beta, transcript variant X1
ral GTPase-activating protein subunit beta isoform X3
ral GTPase-activating protein subunit beta isoform X2
ral GTPase-activating protein subunit beta isoform X1
B-cell receptor-associated protein 31-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
E3 ubiquitin-protein ligase RNF126-like, transcript variant X1
E3 ubiquitin-protein ligase RNF126-like, transcript variant X2
E3 ubiquitin-protein ligase RNF126-like, transcript variant X3
E3 ubiquitin-protein ligase RNF126-like, transcript variant X4
E3 ubiquitin-protein ligase RNF126-like isoform X1
E3 ubiquitin-protein ligase RNF126-like isoform X2
RNA-binding protein MEX3B, transcript variant X1
RNA-binding protein MEX3B, transcript variant X3
RNA-binding protein MEX3B, transcript variant X2
collagen and calcium-binding EGF domain-containing protein 1-like, transcript variant X4
collagen and calcium-binding EGF domain-containing protein 1-like, transcript variant X3
collagen and calcium-binding EGF domain-containing protein 1-like, transcript variant X2
collagen and calcium-binding EGF domain-containing protein 1-like, transcript variant X1
collagen and calcium-binding EGF domain-containing protein 1-like isoform X4
collagen and calcium-binding EGF domain-containing protein 1-like isoform X3
collagen and calcium-binding EGF domain-containing protein 1-like isoform X2
collagen and calcium-binding EGF domain-containing protein 1-like isoform X1
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:12.0:RF00020
alpha-tocopherol transfer protein-like, transcript variant X2
alpha-tocopherol transfer protein-like, transcript variant X1
alpha-tocopherol transfer protein-like isoform X1
alpha-tocopherol transfer protein-like isoform X2
ankyrin repeat domain-containing protein 29-like
transfer RNA cysteine (anticodon GCA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
heterogeneous nuclear ribonucleoprotein 27C, transcript variant X2
heterogeneous nuclear ribonucleoprotein 27C, transcript variant X4
heterogeneous nuclear ribonucleoprotein 27C, transcript variant X3
heterogeneous nuclear ribonucleoprotein 27C, transcript variant X1
heterogeneous nuclear ribonucleoprotein 27C isoform X3
heterogeneous nuclear ribonucleoprotein 27C isoform X2
heterogeneous nuclear ribonucleoprotein 27C isoform X4
heterogeneous nuclear ribonucleoprotein 27C isoform X1
heterogeneous nuclear ribonucleoprotein 27C, transcript variant X6
heterogeneous nuclear ribonucleoprotein 27C, transcript variant X5
heterogeneous nuclear ribonucleoprotein 27C, transcript variant X7
heterogeneous nuclear ribonucleoprotein 27C isoform X6
heterogeneous nuclear ribonucleoprotein 27C isoform X7
heterogeneous nuclear ribonucleoprotein 27C isoform X5
arrestin domain-containing protein 2-like, transcript variant X2
arrestin domain-containing protein 2-like, transcript variant X1
arrestin domain-containing protein 2-like isoform X1
arrestin domain-containing protein 5-like isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 50% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 55% coverage of the annotated genomic feature by RNAseq alignments
acetylcholine receptor subunit alpha-like 2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 56 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 21% coverage of the annotated genomic feature by RNAseq alignments
acetylcholine receptor subunit alpha-like 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 268 Proteins, and 86% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 58% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 66% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 84% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 21% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 65% coverage of the annotated genomic feature by RNAseq alignments
acetylcholine receptor subunit beta-like 2, transcript variant X3
acetylcholine receptor subunit beta-like 2, transcript variant X2
acetylcholine receptor subunit beta-like 2, transcript variant X1
acetylcholine receptor subunit beta-like 2 isoform X3
acetylcholine receptor subunit beta-like 2 isoform X2
acetylcholine receptor subunit beta-like 2 isoform X1
SKI family transcriptional corepressor 2
uncharacterized LOC124636854, transcript variant X1
uncharacterized LOC124636854, transcript variant X2
protein fem-1 homolog CG6966, transcript variant X2
protein fem-1 homolog CG6966, transcript variant X1
protein groucho-like, transcript variant X1
protein groucho-like, transcript variant X4
protein groucho-like, transcript variant X5
protein groucho-like, transcript variant X2
protein groucho-like, transcript variant X6
protein groucho-like, transcript variant X7
protein groucho-like, transcript variant X3
protein groucho-like, transcript variant X8
protein groucho-like, transcript variant X9
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
uncharacterized LOC124637163, transcript variant X1
uncharacterized LOC124637163, transcript variant X2
protein TsetseEP-like, transcript variant X1
protein TsetseEP-like, transcript variant X2
protein TsetseEP-like, transcript variant X3
protein TsetseEP-like, transcript variant X4
proline-rich receptor-like protein kinase PERK9 isoform X1
proline-rich receptor-like protein kinase PERK9 isoform X2
conserved oligomeric Golgi complex subunit 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 82% coverage of the annotated genomic feature by RNAseq alignments
flocculation protein FLO11-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
flocculation protein FLO11-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
flocculation protein FLO11-like isoform X2
flocculation protein FLO11-like isoform X1
bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase 2, mitochondrial, transcript variant X1
bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase 2, mitochondrial, transcript variant X2
bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial isoform X1
bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase 2, mitochondrial isoform X2
furin-like protease 2, transcript variant X1
furin-like protease 2, transcript variant X2
transfer RNA glycine (anticodon GCC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA serine (anticodon GCU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments
secretory carrier-associated membrane protein 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 40 Proteins, and 86% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 17% coverage of the annotated genomic feature by RNAseq alignments
ubiquitin carboxyl-terminal hydrolase 3-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
voltage-dependent calcium channel subunit alpha-2/delta-4-like, transcript variant X2
voltage-dependent calcium channel subunit alpha-2/delta-4-like, transcript variant X1
voltage-dependent calcium channel subunit alpha-2/delta-4-like isoform X1
voltage-dependent calcium channel subunit alpha-2/delta-4-like isoform X2
uncharacterized LOC124637106, transcript variant X2
uncharacterized LOC124637106, transcript variant X3
uncharacterized LOC124637106, transcript variant X1
uncharacterized protein LOC124637106 isoform X3
uncharacterized protein LOC124637106 isoform X2
uncharacterized protein LOC124637106 isoform X1
mitochondrial outer membrane protein SLC25A46-like
39S ribosomal protein L34, mitochondrial, transcript variant X2
39S ribosomal protein L34, mitochondrial, transcript variant X1
39S ribosomal protein L34, mitochondrial isoform X1
39S ribosomal protein L34, mitochondrial isoform X2
nonsense-mediated mRNA decay factor SMG5
ubiquitin-like protein 7, transcript variant X1
ubiquitin-like protein 7, transcript variant X2
2-oxoglutarate and iron-dependent oxygenase domain-containing protein 3-like
uncharacterized LOC124636858, transcript variant X1
uncharacterized LOC124636858, transcript variant X2
uncharacterized protein LOC124636858 isoform X1
uncharacterized protein LOC124636858 isoform X2
mitochondrial import inner membrane translocase subunit Tim29
uncharacterized LOC124636826, transcript variant X1
uncharacterized LOC124636826, transcript variant X3
uncharacterized LOC124636826, transcript variant X4
uncharacterized LOC124636826, transcript variant X2
uncharacterized LOC124636826, transcript variant X5
uncharacterized protein LOC124636826 isoform X1
uncharacterized protein LOC124636826 isoform X2
uncharacterized protein LOC124636826 isoform X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
39S ribosomal protein L23, mitochondrial
tyrosine-protein phosphatase non-receptor type 9-like, transcript variant X5
tyrosine-protein phosphatase non-receptor type 9-like isoform X4
tyrosine-protein phosphatase non-receptor type 9-like, transcript variant X6
tyrosine-protein phosphatase non-receptor type 9-like isoform X5
tyrosine-protein phosphatase non-receptor type 9-like, transcript variant X4
tyrosine-protein phosphatase non-receptor type 9-like, transcript variant X1
tyrosine-protein phosphatase non-receptor type 9-like, transcript variant X3
tyrosine-protein phosphatase non-receptor type 9-like isoform X2
tyrosine-protein phosphatase non-receptor type 9-like, transcript variant X2
tyrosine-protein phosphatase non-receptor type 9-like isoform X1
tyrosine-protein phosphatase non-receptor type 9-like isoform X3
uncharacterized LOC124637140, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
uncharacterized LOC124637140, transcript variant X1
bumetanide-sensitive sodium-(potassium)-chloride cotransporter-like
bumetanide-sensitive sodium-(potassium)-chloride cotransporter-like, transcript variant X2
bumetanide-sensitive sodium-(potassium)-chloride cotransporter-like, transcript variant X1
bumetanide-sensitive sodium-(potassium)-chloride cotransporter-like isoform X2
bumetanide-sensitive sodium-(potassium)-chloride cotransporter-like isoform X1
tRNA-uridine aminocarboxypropyltransferase 2
histone-lysine N-methyltransferase ash1, transcript variant X2
histone-lysine N-methyltransferase ash1, transcript variant X1
histone-lysine N-methyltransferase ash1, transcript variant X3
histone-lysine N-methyltransferase ash1 isoform X1
histone-lysine N-methyltransferase ash1 isoform X2
histone-lysine N-methyltransferase ash1, transcript variant X4
histone-lysine N-methyltransferase ash1 isoform X3
synaptic vesicle glycoprotein 2C-like, transcript variant X2
synaptic vesicle glycoprotein 2C-like, transcript variant X1
ejaculatory bulb-specific protein 3-like
G-patch domain and KOW motifs-containing protein
uncharacterized LOC124637009, transcript variant X2
uncharacterized LOC124637009, transcript variant X1
uncharacterized protein LOC124637009 isoform X2
uncharacterized protein LOC124637009 isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 99% coverage of the annotated genomic feature by RNAseq alignments
dual specificity mitogen-activated protein kinase kinase dSOR1
furin-like protease 1, transcript variant X3
furin-like protease 1, transcript variant X5
furin-like protease 1, transcript variant X1
furin-like protease 1, transcript variant X2
furin-like protease 1, transcript variant X4
furin-like protease 1, isoforms 1/1-X/2 isoform X1
furin-like protease 1, isoforms 1/1-X/2 isoform X2
uncharacterized LOC124636929, transcript variant X1
uncharacterized protein LOC124636929 isoform X1
uncharacterized LOC124636929, transcript variant X2
uncharacterized protein LOC124636929 isoform X2
DENN domain-containing protein Crag, transcript variant X2
DENN domain-containing protein Crag, transcript variant X3
DENN domain-containing protein Crag, transcript variant X1
DENN domain-containing protein Crag isoform X2
DENN domain-containing protein Crag isoform X1
U3 small nucleolar RNA-associated protein 15 homolog
mitochondrial inner membrane protein OXA1L-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins, and 36% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 40 Proteins, and 94% coverage of the annotated genomic feature by RNAseq alignments
pancreatic lipase-related protein 2-like
pancreatic triacylglycerol lipase-like, transcript variant X2
pancreatic triacylglycerol lipase-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
geranylgeranyl transferase type-1 subunit beta
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 94% coverage of the annotated genomic feature by RNAseq alignments
ubiquitin-like modifier-activating enzyme ATG7, transcript variant X1
ubiquitin-like modifier-activating enzyme ATG7, transcript variant X2
ubiquitin-like modifier-activating enzyme ATG7
uncharacterized LOC124636784, transcript variant X1
uncharacterized LOC124636784, transcript variant X2
uncharacterized protein LOC124636784 isoform X1
uncharacterized protein LOC124636784 isoform X2
uncharacterized LOC124636785, transcript variant X3
uncharacterized LOC124636785, transcript variant X2
uncharacterized LOC124636785, transcript variant X1
uncharacterized protein LOC124636785 isoform X1
uncharacterized protein LOC124636785 isoform X2
arginine-glutamic acid dipeptide repeats protein-like
RNA polymerase II elongation factor Ell, transcript variant X2
RNA polymerase II elongation factor Ell, transcript variant X1
RNA polymerase II elongation factor Ell isoform X2
RNA polymerase II elongation factor ELL isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 79% coverage of the annotated genomic feature by RNAseq alignments
small conductance calcium-activated potassium channel protein, transcript variant X1
small conductance calcium-activated potassium channel protein, transcript variant X2
small conductance calcium-activated potassium channel protein, transcript variant X4
small conductance calcium-activated potassium channel protein isoform X1
small conductance calcium-activated potassium channel protein isoform X2
small conductance calcium-activated potassium channel protein isoform X4
piggyBac transposable element-derived protein 4-like
small conductance calcium-activated potassium channel protein, transcript variant X3
small conductance calcium-activated potassium channel protein isoform X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 97% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized LOC124636932, transcript variant X1
uncharacterized LOC124636932, transcript variant X2
uncharacterized protein LOC124636932 isoform X1
uncharacterized protein LOC124636932 isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 32 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 31% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 28% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
eukaryotic translation initiation factor 2 subunit 2
28S ribosomal protein S30, mitochondrial
A disintegrin and metalloproteinase with thrombospondin motifs 7
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like protein 1
heterogeneous nuclear ribonucleoprotein M-like, transcript variant X4
heterogeneous nuclear ribonucleoprotein M-like, transcript variant X5
heterogeneous nuclear ribonucleoprotein M-like, transcript variant X2
heterogeneous nuclear ribonucleoprotein M-like, transcript variant X1
heterogeneous nuclear ribonucleoprotein M-like, transcript variant X3
heterogeneous nuclear ribonucleoprotein M-like isoform X1
heterogeneous nuclear ribonucleoprotein M-like isoform X2
myelin expression factor 2-like isoform X3
heterogeneous nuclear ribonucleoprotein M-like isoform X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 92% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 36 Proteins, and 6% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 45 Proteins, and 41% coverage of the annotated genomic feature by RNAseq alignments
dynein heavy chain, cytoplasmic, transcript variant X2
dynein heavy chain, cytoplasmic, transcript variant X1
dynein heavy chain, cytoplasmic isoform X2
dynein heavy chain, cytoplasmic isoform X1
tyrosine-protein kinase CSK, transcript variant X2
tyrosine-protein kinase CSK, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 88% coverage of the annotated genomic feature by RNAseq alignments
cytochrome c oxidase assembly protein COX16 homolog, mitochondrial
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: tubulin polyglutamylase ttll6-like
methyl-CpG-binding domain protein 3, transcript variant X2
methyl-CpG-binding domain protein 3, transcript variant X1
methyl-CpG-binding domain protein 2 isoform X2
methyl-CpG-binding domain protein 3 isoform X1
probable phospholipid-transporting ATPase IM
uncharacterized LOC124636967, transcript variant X1
uncharacterized LOC124636967, transcript variant X2
transducin-like enhancer protein 4, transcript variant X2
transducin-like enhancer protein 4, transcript variant X1
transducin-like enhancer protein 4, transcript variant X3
transducin-like enhancer protein 4 isoform X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
sodium channel protein para, transcript variant X2
sodium channel protein para, transcript variant X5
sodium channel protein para, transcript variant X1
sodium channel protein para, transcript variant X3
sodium channel protein para, transcript variant X6
sodium channel protein para, transcript variant X4
sodium channel protein para, transcript variant X11
sodium channel protein para, transcript variant X12
sodium channel protein para, transcript variant X15
sodium channel protein para, transcript variant X8
sodium channel protein para, transcript variant X13
sodium channel protein para, transcript variant X17
sodium channel protein para, transcript variant X16
sodium channel protein para, transcript variant X18
sodium channel protein para, transcript variant X9
sodium channel protein para, transcript variant X7
sodium channel protein para, transcript variant X10
sodium channel protein para, transcript variant X14
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, and 99% coverage of the annotated genomic feature by RNAseq alignments
dmX-like protein 2, transcript variant X7
dmX-like protein 2, transcript variant X3
dmX-like protein 2, transcript variant X5
dmX-like protein 2, transcript variant X6
dmX-like protein 2, transcript variant X1
dmX-like protein 2, transcript variant X2
dmX-like protein 2, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
15-hydroxyprostaglandin dehydrogenase [NAD(+)]-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 26% coverage of the annotated genomic feature by RNAseq alignments
protein prenyltransferase alpha subunit repeat-containing protein 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 96% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 96% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 96% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 23% coverage of the annotated genomic feature by RNAseq alignments
actin-binding Rho-activating protein-like
adipokinetic hormone/corazonin-related peptide receptor variant I-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 77% coverage of the annotated genomic feature by RNAseq alignments
ribose-phosphate pyrophosphokinase 2-like
glutathione S-transferase 1-like, transcript variant X1
glutathione S-transferase 1-like, transcript variant X2
glutathione S-transferase 1-like, transcript variant X3
glutathione S-transferase 1-like isoform X1
glutathione S-transferase 1-like isoform X2
probable ATP-dependent RNA helicase DHX34, transcript variant X1
probable ATP-dependent RNA helicase DHX34 isoform X1
probable ATP-dependent RNA helicase DHX34, transcript variant X2
probable ATP-dependent RNA helicase DHX34 isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 66% coverage of the annotated genomic feature by RNAseq alignments
centrosome-associated zinc finger protein CP190
COORDINATES: nucleotide motif:Rfam:12.0:RF00001
uncharacterized protein LOC124636880 isoform X11
tropomyosin-1, isoforms 9A/A/B isoform X21
tropomyosin-1, isoforms 9A/A/B isoform X22
tropomyosin-1, isoforms 9A/A/B isoform X20
tropomyosin-1, isoforms 9A/A/B isoform X23
tropomyosin-1, isoforms 9A/A/B isoform X24
tropomyosin-1, isoforms 9A/A/B isoform X25
tumor necrosis factor, alpha-induced protein 8-like protein 2 A, transcript variant X1
tumor necrosis factor, alpha-induced protein 8-like protein 2 A, transcript variant X2
tumor necrosis factor, alpha-induced protein 8-like protein 2 A isoform X1
tumor necrosis factor, alpha-induced protein 8-like protein 2 A isoform X2
OTU domain-containing protein 7B-like, transcript variant X2
OTU domain-containing protein 7B-like, transcript variant X1
OTU domain-containing protein 7B-like isoform X2
OTU domain-containing protein 7B-like isoform X1
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13
very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase
phosphatidylinositol 5-phosphate 4-kinase type-2 alpha, transcript variant X1
phosphatidylinositol 5-phosphate 4-kinase type-2 alpha, transcript variant X3
phosphatidylinositol 5-phosphate 4-kinase type-2 alpha isoform X1
phosphatidylinositol 5-phosphate 4-kinase type-2 alpha isoform X3
phosphatidylinositol 5-phosphate 4-kinase type-2 alpha, transcript variant X2
phosphatidylinositol 5-phosphate 4-kinase type-2 beta isoform X2
transfer RNA alanine (anticodon CGC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
steroid receptor seven-up, isoforms B/C, transcript variant X2
steroid receptor seven-up, isoforms B/C isoform X2
steroid receptor seven-up, isoforms B/C, transcript variant X1
uncharacterized LOC124636931, transcript variant X2
uncharacterized LOC124636931, transcript variant X1
uncharacterized protein LOC124636931 isoform X2
uncharacterized protein LOC124636931 isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 59% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
uncharacterized LOC124636961, transcript variant X1
uncharacterized protein LOC124636961 isoform X1
uncharacterized LOC124636961, transcript variant X2
uncharacterized protein LOC124636961 isoform X2
limbic system-associated membrane protein-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
myb/SANT-like DNA-binding domain-containing protein 3, transcript variant X1
myb/SANT-like DNA-binding domain-containing protein 3, transcript variant X2
myb/SANT-like DNA-binding domain-containing protein 3 isoform X1
myb/SANT-like DNA-binding domain-containing protein 3 isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
peroxisomal N(1)-acetyl-spermine/spermidine oxidase-like, transcript variant X3
peroxisomal N(1)-acetyl-spermine/spermidine oxidase-like, transcript variant X5
peroxisomal N(1)-acetyl-spermine/spermidine oxidase-like, transcript variant X1
peroxisomal N(1)-acetyl-spermine/spermidine oxidase-like, transcript variant X4
peroxisomal N(1)-acetyl-spermine/spermidine oxidase-like, transcript variant X2
peroxisomal N(1)-acetyl-spermine/spermidine oxidase-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transfer RNA tryptophan (anticodon CCA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
uncharacterized LOC124637076, transcript variant X4
uncharacterized LOC124637076, transcript variant X3
uncharacterized LOC124637076, transcript variant X1
uncharacterized LOC124637076, transcript variant X2
uncharacterized protein LOC124637076 isoform X1
uncharacterized protein LOC124637076 isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 87% coverage of the annotated genomic feature by RNAseq alignments
counting factor associated protein D-like
WD repeat, SAM and U-box domain-containing protein 1-like
uncharacterized LOC124636862, transcript variant X2
uncharacterized LOC124636862, transcript variant X1
uncharacterized LOC124636862, transcript variant X3
uncharacterized protein LOC124636862 isoform X2
uncharacterized protein LOC124636862 isoform X1
uncharacterized LOC124636864, transcript variant X2
uncharacterized LOC124636864, transcript variant X1
cytochrome b-c1 complex subunit 2, mitochondrial-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 85% coverage of the annotated genomic feature by RNAseq alignments
ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial, transcript variant X1
ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial, transcript variant X2
ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X1
ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X2
myogenesis-regulating glycosidase, transcript variant X2
myogenesis-regulating glycosidase, transcript variant X3
transfer RNA leucine (anticodon UAA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
myogenesis-regulating glycosidase, transcript variant X1
myogenesis-regulating glycosidase isoform X1
myogenesis-regulating glycosidase, transcript variant X4
myogenesis-regulating glycosidase isoform X2
myogenesis-regulating glycosidase, transcript variant X5
myogenesis-regulating glycosidase isoform X3
myogenesis-regulating glycosidase, transcript variant X6
myogenesis-regulating glycosidase isoform X4
DDB1- and CUL4-associated factor 12 homolog, transcript variant X1
DDB1- and CUL4-associated factor 12 homolog, transcript variant X2
DDB1- and CUL4-associated factor 12 homolog isoform X2
DDB1- and CUL4-associated factor 12 homolog isoform X1
tubulin-specific chaperone A-like, transcript variant X1
programmed cell death protein 7-like isoform X1
tubulin-specific chaperone A-like, transcript variant X2
tubulin-specific chaperone A-like isoform X2
myogenesis-regulating glycosidase-like, transcript variant X2
myogenesis-regulating glycosidase-like isoform X2
myogenesis-regulating glycosidase-like, transcript variant X1
myogenesis-regulating glycosidase-like isoform X1
probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial, transcript variant X4
probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial, transcript variant X2
probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X4
probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X2
probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial, transcript variant X3
probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial, transcript variant X1
probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X3
probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1
vacuolar protein sorting-associated protein 33B
phosphatidylinositol 3-kinase catalytic subunit type 3, transcript variant X2
phosphatidylinositol 3-kinase catalytic subunit type 3, transcript variant X1
phosphatidylinositol 3-kinase catalytic subunit type 3
dolichol-phosphate mannosyltransferase subunit 3
katanin p60 ATPase-containing subunit A-like 2
BTB/POZ domain-containing protein 2-like
ras-specific guanine nucleotide-releasing factor 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 31% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: ras-specific guanine nucleotide-releasing factor 1-like
AP-3 complex subunit beta-2, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
AP-3 complex subunit beta-2, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 86% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments
cytochrome P450 4C1-like, transcript variant X1
cytochrome P450 4C1-like, transcript variant X2
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
conserved oligomeric Golgi complex subunit 5
lon protease homolog, mitochondrial, transcript variant X2
lon protease homolog, mitochondrial, transcript variant X1
lon protease homolog, mitochondrial isoform X2
lon protease homolog, mitochondrial isoform X1
COORDINATES: nucleotide motif:Rfam:12.0:RF00004
probable tRNA (guanine(26)-N(2))-dimethyltransferase
glycosylated lysosomal membrane protein A-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
general transcription and DNA repair factor IIH helicase subunit XPD
zinc finger protein 44-like, transcript variant X1
zinc finger protein 44-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
omega-amidase NIT2, transcript variant X2
omega-amidase NIT2, transcript variant X1
A-kinase anchor protein 17A, transcript variant X3
A-kinase anchor protein 17A, transcript variant X1
A-kinase anchor protein 17A, transcript variant X2
actin cytoskeleton-regulatory complex protein PAN1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins