Staphylococcus condimenti strain StO 2014-01 plasmid pStO2014-01, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus.
Characterization of virulence potential of Staphylococcus condimenti isolated from a patient with severe soft tissue infection
Submitted (19-DEC-2016) Department of Medical Microbiology, St. Olav University Hospital, P.O box 3250, Trondheim 7006, Norway
REFSEQ INFORMATION: The reference sequence is identical to\nCP018777.1.\nBacteria and source DNA available from St. Olavs University\nHospital.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: APR-2015\nAssembly Method :: SPAdes v. 3.5.0\nAssembly Name :: SC_StO2014-01_4\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: Illumina; MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/28/2022 01:24:11\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,615\nCDSs (total) :: 2,535\nGenes (coding) :: 2,499\nCDSs (with protein) :: 2,499\nGenes (RNA) :: 80\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 61\nncRNAs :: 4\nPseudo Genes (total) :: 36\nCDSs (without protein) :: 36\nPseudo Genes (ambiguous residues) :: 0 of 36\nPseudo Genes (frameshifted) :: 14 of 36\nPseudo Genes (incomplete) :: 20 of 36\nPseudo Genes (internal stop) :: 10 of 36\nPseudo Genes (multiple problems) :: 8 of 36\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_001568503.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_001829877.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002489261.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_002483575.1
COORDINATES: similar to AA sequence:RefSeq:YP_501318.1
ATP-dependent Clp protease ATP-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_002501032.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017464805.1
GO:0071949 - FAD binding [Evidence IEA]; GO:0050151 - oleate hydratase activity [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002474535.1
COORDINATES: similar to AA sequence:RefSeq:WP_000608191.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019467789.1
COORDINATES: similar to AA sequence:RefSeq:WP_011303361.1
type 1 glutamine amidotransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_001105942.1
GO:0004803 - transposase activity [Evidence IEA]
IS6-like element IS257 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_017636332.1
COORDINATES: similar to AA sequence:RefSeq:WP_000731972.1
COORDINATES: protein motif:HMM:NF033608.1
type I toxin-antitoxin system Fst family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_001142398.1
COORDINATES: similar to AA sequence:RefSeq:WP_012657379.1
GO:0006260 - DNA replication [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017175392.1
COORDINATES: similar to AA sequence:RefSeq:WP_002469809.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013579.2
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002508689.1
COORDINATES: similar to AA sequence:RefSeq:WP_019236158.1
COORDINATES: similar to AA sequence:RefSeq:WP_000493114.1
COORDINATES: protein motif:HMM:NF037690.2
COORDINATES: similar to AA sequence:RefSeq:WP_000119686.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_032489479.1
CadD family cadmium resistance transporter
COORDINATES: similar to AA sequence:RefSeq:WP_002447387.1
COORDINATES: similar to AA sequence:RefSeq:WP_020368559.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.