Mycobacterium marseillense strain FLAC0026 plasmid pFLAC0026, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium avium complex (MAC).
Phylogentic analysis of Mycobacterium avium complex whole genomes
Submitted (29-AUG-2017) Pediatrics-Infectious and Communicable Diseases, University of Michigan, 1150 West Medical Center Drive, Msrb Iii, Room 8323, Ann Arbor, MI 48109-0646, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP023148.1.\nBacteria available from University of Michigan Medical School,\nLindsay Caverly.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 02-SEP-2016\nAssembly Method :: SPAdes v. 3.9.0\nAssembly Name :: 67273.fasta\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 150X\nSequencing Technology :: Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/23/2023 02:55:43\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,929\nCDSs (total) :: 4,879\nGenes (coding) :: 4,823\nCDSs (with protein) :: 4,823\nGenes (RNA) :: 50\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 44\nncRNAs :: 3\nPseudo Genes (total) :: 56\nCDSs (without protein) :: 56\nPseudo Genes (ambiguous residues) :: 0 of 56\nPseudo Genes (frameshifted) :: 24 of 56\nPseudo Genes (incomplete) :: 39 of 56\nPseudo Genes (internal stop) :: 4 of 56\nPseudo Genes (multiple problems) :: 11 of 56\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_008264013.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix domain-containing protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF014581.2
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007171759.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013470265.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005670827.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007079078.1
COORDINATES: protein motif:HMM:NF012759.2
COORDINATES: similar to AA sequence:RefSeq:WP_005088170.1
COORDINATES: similar to AA sequence:RefSeq:WP_011562896.1
COORDINATES: similar to AA sequence:RefSeq:WP_005149417.1