Mycobacterium marseillense strain FLAC0026 plasmid pFLAC0026, complete sequence.
type: Entry
definition: Mycobacterium marseillense strain FLAC0026 plasmid pFLAC0026, complete sequence.
sequence version: NZ_CP023148.1
sequence date: 2023-04-23
sequence: sequence
division: CON
label: NZ_CP023148.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN07528776
keyword: RefSeq
source: Mycobacterium marseillense
organism: Mycobacterium marseillense
taxonomy: Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium avium complex (MAC).
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP023148.1.\nBacteria available from University of Michigan Medical School,\nLindsay Caverly.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 02-SEP-2016\nAssembly Method :: SPAdes v. 3.9.0\nAssembly Name :: 67273.fasta\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 150X\nSequencing Technology :: Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/23/2023 02:55:43\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,929\nCDSs (total) :: 4,879\nGenes (coding) :: 4,823\nCDSs (with protein) :: 4,823\nGenes (RNA) :: 50\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 44\nncRNAs :: 3\nPseudo Genes (total) :: 56\nCDSs (without protein) :: 56\nPseudo Genes (ambiguous residues) :: 0 of 56\nPseudo Genes (frameshifted) :: 24 of 56\nPseudo Genes (incomplete) :: 39 of 56\nPseudo Genes (internal stop) :: 4 of 56\nPseudo Genes (multiple problems) :: 11 of 56\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 19605
topology: circular
so has quality: SO_0000988
location: 1..19605
location: region:1-19605:1
RO_0002162: 701042

NZ_CP023148
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN07528776
type: BioSample
SIO_000068: biosample

1
title: Phylogentic analysis of Mycobacterium avium complex whole genomes
author: Caverly, L.J.
author: Spilker, T.
author: LiPuma, J.
journal: Unpublished

2
title: Direct Submission
author: Caverly, L.J.
author: Spilker, T.
author: LiPuma, J.
journal: Submitted (29-AUG-2017) Pediatrics-Infectious and Communicable Diseases, University of Michigan, 1150 West Medical Center Drive, Msrb Iii, Room 8323, Ann Arbor, MI 48109-0646, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19605:1
position: 19605
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-19605:1:source
so part of: sequence
organism: Mycobacterium marseillense
mol type: genomic DNA
strain: FLAC0026
host: Homo sapiens
plasmid: pFLAC0026
country: USA
collection date: 2013
collected by: Lindsay J. Caverly

701042
type: Taxonomy
SIO_000068: taxonomy

CKJ54_RS24690
type: Gene
subclass of: SO_0000704
RO_0002162: 701042
locus tag: CKJ54_RS24690
old locus tag: CKJ54_24690
so part of: sequence
location: 96..1226
location: region:96-1226:1
so has part: feature:96-1226:1:exon
subclass of: SO_0000010

position:96:1
position: 96
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1226:1
position: 1226
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:96-1226:1:exon

CKJ54_RS24690
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 701042
locus tag: CKJ54_RS24690
old locus tag: CKJ54_24690
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008264013.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MVAAAIVLELGDAPYAGVPCWAGAERWAQWTVPVAYDLRYDTEVRPHMGANQISRRALLCIAQARARYADYATGRDCRPSNERLAADTGYDLRTIQRANTVLRLLGVATEVLRGRQRTRVERFASWRVGDRARGWASVWALHDHRLLNRVIHTMHRVLSPHLRSGPVRDSHVRQDVVTTATRRRTGAGEHGAKRRASPDPGGLTLAKAWRADPHAPPWCRRHSPTAWATVLAGPARYGWTPRDVNQLITDWLGVGHWIPDAPHKPIGLLGAIVAWHGTDCLDQRPAAADIARETAEFTEARARLAAQSTARSEAAQAHAIGRAALGGAGHAWAARECARLAQNAARRRSAAAAAEAAALDAAIRRARSNGGRRFFG
SIO_010081: CKJ54_RS24690
subclass of: SO_0000673
so part of: CKJ54_RS24690
location: 96..1226
location: region:96-1226:1
so has part: feature:96-1226:1:exon

WP_244185721.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:96-1226:1:exon

CKJ54_RS24960
type: Gene
subclass of: SO_0000704
RO_0002162: 701042
locus tag: CKJ54_RS24960
so part of: sequence
location: complement(1223..1549)
location: region:1223-1549:-1
so has part: feature:1223-1549:-1:exon
subclass of: SO_0000010

position:1223:-1
position: 1223
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1549:-1
position: 1549
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1223-1549:-1:exon

CKJ54_RS24960
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 701042
locus tag: CKJ54_RS24960
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTDPADRTRILAQLAEQQSHQRHQYVAELADLYSRITQLRADLKTTEQTYRTAYRRAATTGLLTGPQLRSLGLPPIDARRRPPRPIPSAPSDTPHVPAEQLSQPMSNH
SIO_010081: CKJ54_RS24960
subclass of: SO_0000673
so part of: CKJ54_RS24960
location: complement(1223..1549)
location: region:1223-1549:-1
so has part: feature:1223-1549:-1:exon

WP_157746218.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1223-1549:-1:exon

CKJ54_RS24695
type: Gene
subclass of: SO_0000704
RO_0002162: 701042
locus tag: CKJ54_RS24695
old locus tag: CKJ54_24695
so part of: sequence
location: 2039..2770
location: region:2039-2770:1
so has part: feature:2039-2770:1:exon
subclass of: SO_0000010

position:2039:1
position: 2039
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2770:1
position: 2770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2039-2770:1:exon

CKJ54_RS24695
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 701042
locus tag: CKJ54_RS24695
old locus tag: CKJ54_24695
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTVAVARVSVSVWLPRVAHTQLVEAADAEGVSLAVLARRAAASAMATDDGRLGMPAPSGEAVDALRTAGYALNQILPAWTATATRAQDTALTARTAAVMDRITHAASGIRLLPRASPTLGAAGQPSDPGRWRLVRVTTDAHTAQWWAQAGTAAGFRSSANWVRDALAGAHGLAVARPPTPATIAARAVSGRVLGLLAQSEAVADERPAASGVDLRRRIDAAAVAIWAGLESLLAYGGDPKARR
SIO_010081: CKJ54_RS24695
subclass of: SO_0000673
so part of: CKJ54_RS24695
location: 2039..2770
location: region:2039-2770:1
so has part: feature:2039-2770:1:exon

WP_157746219.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2039-2770:1:exon

CKJ54_RS24700
type: Gene
subclass of: SO_0000704
RO_0002162: 701042
locus tag: CKJ54_RS24700
old locus tag: CKJ54_24700
so part of: sequence
location: 2773..3801
location: region:2773-3801:1
so has part: feature:2773-3801:1:exon
subclass of: SO_0000010

position:2773:1
position: 2773
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3801:1
position: 3801
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2773-3801:1:exon

CKJ54_RS24700
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 701042
locus tag: CKJ54_RS24700
old locus tag: CKJ54_24700
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIAKITHGRSAARALAYDHGPGRADEHHHPRRVAGNVAGRDWQLRAHRMQRFVAAHQRDKSDRGVYRVALANPDTDRVLSDREWRSIAEKFVARFGADKGMWEATRHDRHHIHLTISKDRFDGSRMSTSQDYRRAAAICRELERDHGLTNAAERNGRGTGRVRGDAEAASRGLPQPDRDWLRSTIGRVLREGGGVEELRTAGVSVKLNQASTGRISGISYARTPDRHQSRDSGSPAEPLWFKGSTLGKAYSWNQVSDQLRGTAPQHGAPPAPPAVGTSSAAAQRVGGGERTEEPPLLERSLELKSLSVEQRRVRALEMARERAAERARTQERHRRQDRSRER
SIO_010081: CKJ54_RS24700
subclass of: SO_0000673
so part of: CKJ54_RS24700
location: 2773..3801
location: region:2773-3801:1
so has part: feature:2773-3801:1:exon

WP_095578338.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2773-3801:1:exon

CKJ54_RS24705
type: Gene
subclass of: SO_0000704
RO_0002162: 701042
locus tag: CKJ54_RS24705
old locus tag: CKJ54_24705
so part of: sequence
location: 4388..5710
location: region:4388-5710:1
so has part: feature:4388-5710:1:exon
subclass of: SO_0000010

position:4388:1
position: 4388
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5710:1
position: 5710
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4388-5710:1:exon

CKJ54_RS24705
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 701042
locus tag: CKJ54_RS24705
old locus tag: CKJ54_24705
inference: COORDINATES: protein motif:HMM:NF014581.2
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretory system conjugative DNA transfer family protein
translation: MDAQGGVVAASARGAALVIGPPGSGKTQSVIMPSVAYAPGAVVSTSMKAEVLAATHVARSLRGKCWLFDPGGTTVPAGMIGLRWNPLCDVTDWDAARSVAARLTGPARAGAGASHDGDHWTDRAETWLTVLLYAARLSAPGGDIAALARWSLNPTDAGPECEAIFIVAEQDGDDDATIAAALLNSLLTVPDRERESIASTLGRIMNIYTSSAALRAGINPNFDVHAFVRSTDTVYITAPVDRQRDYAPLIAGFLESIRLAQYHRRQAVDLGHETQSAPVTFVLDEAANTAPIPLPNVVSEAGGQGLHLVVAFQDLSQARARWGHGADGFLTLFPEKLILPGMNDRSTADMLSKMSGEYDRMTISVTQPGNTTNTSFSPGRPHFSTSCGQPGYGYHTTRTPVLSIADITGLPAGRGLYYSPSGWELLTLNPWWHQRQHFGL
SIO_010081: CKJ54_RS24705
subclass of: SO_0000673
so part of: CKJ54_RS24705
location: 4388..5710
location: region:4388-5710:1
so has part: feature:4388-5710:1:exon

WP_157746220.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4388-5710:1:exon

CKJ54_RS24715
type: Gene
subclass of: SO_0000704
RO_0002162: 701042
locus tag: CKJ54_RS24715
old locus tag: CKJ54_24715
so part of: sequence
location: 6488..7543
location: region:6488-7543:1
so has part: feature:6488-7543:1:exon
subclass of: SO_0000010

position:6488:1
position: 6488
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7543:1
position: 7543
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6488-7543:1:exon

CKJ54_RS24715
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 701042
locus tag: CKJ54_RS24715
old locus tag: CKJ54_24715
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007171759.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS110 family transposase
translation: MTDYVIGVDVHKRNHTFVAVDCTGRKLATKTVMATTAGHEVALRWARITCPQHRLWGIEDVRGVSARLEAELMDAGEAVVRVPPKLTARQRASARTVGKSDPIDALAVARAVLREPDLPRAQHDAHSRDVKLLVDYRDRLVRSRRALANRVLARLHELEPEYSPIRSAFCFAKHRQVAQALLASHTGVLAELTRAELEQIAVLSGHIASTDKRIKDIVVDVASALLTIDGCGPLTTAKIIGETAGITRFANEAKYARYVGVAPIPHWSGGAAVPLRLTRSGNRQLNRALYTIAMLQIRRGGRGEQYYRQRIAGGDTHRHALRCLKRHICRAVYHALIVDTKTRAAAAAQNG
SIO_010081: CKJ54_RS24715
subclass of: SO_0000673
so part of: CKJ54_RS24715
location: 6488..7543
location: region:6488-7543:1
so has part: feature:6488-7543:1:exon

WP_095578354.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6488-7543:1:exon

CKJ54_RS25220
type: Gene
subclass of: SO_0000704
RO_0002162: 701042
locus tag: CKJ54_RS25220
so part of: sequence
location: 7580..7738
location: region:7580-7738:1
so has part: feature:7580-7738:1:exon
subclass of: SO_0000010

position:7580:1
position: 7580
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7738:1
position: 7738
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7580-7738:1:exon

CKJ54_RS25220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 701042
locus tag: CKJ54_RS25220
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTTGAGDPSEKDQLAGLFQALKIKIWPMLTDRSPITKSQREQALGYDAQTGI
SIO_010081: CKJ54_RS25220
subclass of: SO_0000673
so part of: CKJ54_RS25220
location: 7580..7738
location: region:7580-7738:1
so has part: feature:7580-7738:1:exon

WP_208620073.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7580-7738:1:exon

CKJ54_RS24725
type: Gene
subclass of: SO_0000704
RO_0002162: 701042
locus tag: CKJ54_RS24725
old locus tag: CKJ54_24725
so part of: sequence
location: 7921..8490
location: region:7921-8490:1
so has part: feature:7921-8490:1:exon
subclass of: SO_0000010

position:7921:1
position: 7921
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8490:1
position: 8490
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7921-8490:1:exon

CKJ54_RS24725
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 701042
locus tag: CKJ54_RS24725
old locus tag: CKJ54_24725
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013470265.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MTATLGYARVSTTGQELDAQLGVLTAAGVSADRVFTDKLSGAVNTDRPGLAALLDYAREGDTVVVTAIDRLGRSVAEVTRTIADLSERRILLRALREGVDTGTPTGRAVAAIMATLAELELELGRERRASSRVSRRARGLPATKPTKLSAERQEQLRRLAETGEPVRELALAFGIGRATAYRYMAQTRG
SIO_010081: CKJ54_RS24725
subclass of: SO_0000673
so part of: CKJ54_RS24725
location: 7921..8490
location: region:7921-8490:1
so has part: feature:7921-8490:1:exon

WP_095578341.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7921-8490:1:exon

CKJ54_RS24730
type: Gene
subclass of: SO_0000704
RO_0002162: 701042
locus tag: CKJ54_RS24730
old locus tag: CKJ54_24730
so part of: sequence
location: 8674..10344
location: region:8674-10344:1
so has part: feature:8674-10344:1:exon
subclass of: SO_0000010

position:8674:1
position: 8674
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10344:1
position: 10344
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8674-10344:1:exon

CKJ54_RS24730
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 701042
locus tag: CKJ54_RS24730
old locus tag: CKJ54_24730
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005670827.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO process: GO:0006306 - DNA methylation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: N-6 DNA methylase
translation: MPPMTSQADTAELRKARGAFFTPEPIARFIADWAVQTVSDRVLEPSCGEASFMVAAAHRLKRLGADRQAKCTGALDGIELHPESAEAARQLVRAAGGRSRVTVSDFFDIEPSGSYDAVIGNPPYVRYQDFAGASRARSRQAALRAGVGLTSLASSWAAFTVHAALFLRPGGRMGLVLPAELLSVNYAADVRRFLLQSFAKVDLVLFTERVFPGVQEEVVLLLAEGYLGGPTDHASVYQYRSAAELATIAASRTWKPARPEEKWTPSLLSSEALNAYTTLLAGGDYTTLQTWGETTLGMVTGNNKYFALSPQRIAELGLAPSDVIPLSPPGSRHLRGLSFSKAALDEMGRNGSATWLFRPSGEPSPGGWAYIAAGEATQVDAAYKCRVRKPWWRVPYLAPADLLLTYMNADTPRLSTNAARVSHLNSVHGVYLHGGLRQLGKRMLPLGSLTSMTLVGAETVGRAYGGGMLKIEPREADRLPVPSPALVESALEQLTSIRPQVAGLLRGGKLVSAAKLVDDVLLVGALGMARGDVRTLREAHAELTARRTARASRGSN
SIO_010081: CKJ54_RS24730
subclass of: SO_0000673
so part of: CKJ54_RS24730
location: 8674..10344
location: region:8674-10344:1
so has part: feature:8674-10344:1:exon

WP_095578356.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8674-10344:1:exon

CKJ54_RS24735
type: Gene
subclass of: SO_0000704
RO_0002162: 701042
locus tag: CKJ54_RS24735
old locus tag: CKJ54_24735
so part of: sequence
location: 10331..11077
location: region:10331-11077:1
so has part: feature:10331-11077:1:exon
subclass of: SO_0000010

position:10331:1
position: 10331
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11077:1
position: 11077
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10331-11077:1:exon

CKJ54_RS24735
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 701042
locus tag: CKJ54_RS24735
old locus tag: CKJ54_24735
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007079078.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MARIDDLLITAVKSVGPKPPDTAKQGEKNPWNLAISNAFAQAIGEELRARGMTGARPGGPGDLAGSGAERRLAGGIGAKRVDVTWATEEAGLMLACSVKTIMFKDAASNHYQKNLTNRRADLLFESTTLHRRFPFAVIAGFLFMDRGAADDGTPRRNSTFQNVFPRFRLFTRRDDPADRDEQYERLYVLLLDPNPFAPSIECYEVNDEHHKVDLETAFDELVMLTAERNFDQYSAEDDGKRIRKLPGG
SIO_010081: CKJ54_RS24735
subclass of: SO_0000673
so part of: CKJ54_RS24735
location: 10331..11077
location: region:10331-11077:1
so has part: feature:10331-11077:1:exon

WP_244185719.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10331-11077:1:exon

CKJ54_RS24740
type: Gene
subclass of: SO_0000704
RO_0002162: 701042
locus tag: CKJ54_RS24740
old locus tag: CKJ54_24740
so part of: sequence
location: complement(11499..12419)
location: region:11499-12419:-1
so has part: feature:11499-12419:-1:exon
subclass of: SO_0000010

position:11499:-1
position: 11499
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12419:-1
position: 12419
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11499-12419:-1:exon

CKJ54_RS24740
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 701042
locus tag: CKJ54_RS24740
old locus tag: CKJ54_24740
inference: COORDINATES: protein motif:HMM:NF012759.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: acyl carrier protein
translation: MTENTIPEIPADDEFDRLLEQSSIGSPEARAVSDRVAAKRAEDLVRRLEGEDDNLDEELDEISIERMDNEFDDDIVEDEHANVTAGDDVSENDAVIVLSGLLGVVSVGEELNSESAVAATADSRLPDERIAALMESFFDREDAAILQTCDDRQPLPATPVTSAECVASAQASDEECRAEKTRQRLERLRAIQRRRKEILLRREILAALIDIVEETTGIAIDRDGLSPDATFADLGIDSMAGVEITKAIETRYDISISVDDWAELRTVNDVVTYCLQRLSDEPPAATEREIAAGAVCPEAAPRREYC
SIO_010081: CKJ54_RS24740
subclass of: SO_0000673
so part of: CKJ54_RS24740
location: complement(11499..12419)
location: region:11499-12419:-1
so has part: feature:11499-12419:-1:exon

WP_095578342.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11499-12419:-1:exon

CKJ54_RS24745
type: Gene
subclass of: SO_0000704
RO_0002162: 701042
locus tag: CKJ54_RS24745
old locus tag: CKJ54_24745
so part of: sequence
location: complement(12412..13308)
location: region:12412-13308:-1
so has part: feature:12412-13308:-1:exon
subclass of: SO_0000010

position:12412:-1
position: 12412
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13308:-1
position: 13308
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12412-13308:-1:exon

CKJ54_RS24745
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 701042
locus tag: CKJ54_RS24745
old locus tag: CKJ54_24745
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAIVTDDSNDDRAPHDEFAPRSDSDRLLTAHEKAGKADMEKLTGDDEDPSAEQLVEALEDQERKRTDKLVYEKLEGAGFNGTQWERFCFKHGRHALGKTEGWLQSGDIFTLTSSIGHGVGVDPRARETLRRDELHRQALANDVVFAGLRLWRRRQSVPKQAWRPDGGASLVTSVLNSCIYAFSNEFRKWQKVFLESIDERSTEHEKLSKIEYGLDGRNKPVPMFPSPEMKLITDDELDRALQRIDDPLIVKIAQLEAQGLTQAQIGREVQKTSRQIEYVLKKLHQQNIRSQMEGNNDD
SIO_010081: CKJ54_RS24745
subclass of: SO_0000673
so part of: CKJ54_RS24745
location: complement(12412..13308)
location: region:12412-13308:-1
so has part: feature:12412-13308:-1:exon

WP_095578343.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12412-13308:-1:exon

CKJ54_RS24965
type: Gene
subclass of: SO_0000704
RO_0002162: 701042
locus tag: CKJ54_RS24965
so part of: sequence
location: complement(13486..13671)
location: region:13486-13671:-1
so has part: feature:13486-13671:-1:exon
subclass of: SO_0000010

position:13486:-1
position: 13486
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13671:-1
position: 13671
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13486-13671:-1:exon

CKJ54_RS24965
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 701042
locus tag: CKJ54_RS24965
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSTLPSMALALSSVAVLAVMVALVWPAFTLWVEIGVAVVAPIVAEAARQYNDQSAPTNEEG
SIO_010081: CKJ54_RS24965
subclass of: SO_0000673
so part of: CKJ54_RS24965
location: complement(13486..13671)
location: region:13486-13671:-1
so has part: feature:13486-13671:-1:exon

WP_157746221.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13486-13671:-1:exon

CKJ54_RS24970
type: Gene
subclass of: SO_0000704
RO_0002162: 701042
locus tag: CKJ54_RS24970
so part of: sequence
location: 13943..14272
location: region:13943-14272:1
so has part: feature:13943-14272:1:exon
subclass of: SO_0000010

position:13943:1
position: 13943
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14272:1
position: 14272
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13943-14272:1:exon

CKJ54_RS24970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 701042
locus tag: CKJ54_RS24970
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDPSRRDLLQFVHGQQVLVRVEPAVPAVQNTAVFGATADFGPVAWLRVAGGEGQAGRVTGRPPMIWVRLIGLLEPAIAIPLSLSGAHRHCLIPVEASNPSVNGRVALTS
SIO_010081: CKJ54_RS24970
subclass of: SO_0000673
so part of: CKJ54_RS24970
location: 13943..14272
location: region:13943-14272:1
so has part: feature:13943-14272:1:exon

WP_157746222.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13943-14272:1:exon

CKJ54_RS24975
type: Gene
subclass of: SO_0000704
RO_0002162: 701042
locus tag: CKJ54_RS24975
so part of: sequence
location: 14534..14716
location: region:14534-14716:1
so has part: feature:14534-14716:1:exon
subclass of: SO_0000010

position:14534:1
position: 14534
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14716:1
position: 14716
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14534-14716:1:exon

CKJ54_RS24975
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 701042
locus tag: CKJ54_RS24975
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSIINAVVIALVLRQRVGWDRRDIAAALIAAAAVVVALTFPAAAPVVGIANAVLITLTLR
SIO_010081: CKJ54_RS24975
subclass of: SO_0000673
so part of: CKJ54_RS24975
location: 14534..14716
location: region:14534-14716:1
so has part: feature:14534-14716:1:exon

WP_157746223.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14534-14716:1:exon

CKJ54_RS24760
type: Gene
subclass of: SO_0000704
RO_0002162: 701042
locus tag: CKJ54_RS24760
old locus tag: CKJ54_24760
so part of: sequence
location: 14864..15583
location: region:14864-15583:1
so has part: feature:14864-15583:1:exon
subclass of: SO_0000010

position:14864:1
position: 14864
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15583:1
position: 15583
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14864-15583:1:exon

CKJ54_RS24760
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 701042
locus tag: CKJ54_RS24760
old locus tag: CKJ54_24760
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005088170.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MTAIAVCHSRKGGVGKSFIAYELATLLGAVLVDLEHDGGGVTTKWGYRPQDHPRARLLDALEPGATAPRPLRGFKKPALVPGHPDLYDHQPDATTMADALTKWAQEWDTDWIIVDTHPGASPAAHGALAVANIVLAPTALRTAELDATAELVNEIADYPLVIVPNFVPTTPPAAEIQRLRQIIENTPVQVAPPIPTALHVGTRKKRIAITAENPPAKSLQRVADALGNLATFVKGYVDG
SIO_010081: CKJ54_RS24760
subclass of: SO_0000673
so part of: CKJ54_RS24760
location: 14864..15583
location: region:14864-15583:1
so has part: feature:14864-15583:1:exon

WP_095578346.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14864-15583:1:exon

CKJ54_RS24765
type: Gene
subclass of: SO_0000704
RO_0002162: 701042
locus tag: CKJ54_RS24765
old locus tag: CKJ54_24765
so part of: sequence
location: 15576..16004
location: region:15576-16004:1
so has part: feature:15576-16004:1:exon
subclass of: SO_0000010

position:15576:1
position: 15576
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16004:1
position: 16004
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15576-16004:1:exon

CKJ54_RS24765
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 701042
locus tag: CKJ54_RS24765
old locus tag: CKJ54_24765
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MADGLDSLTAMRTKATTSRRTLPPPRHQPRQTPVRMPDPAPPATAAPASPPAAPSPARAGAGNAPSGSELAKVSIYLDEPTDAYLETVRAAARTTKPRVDATRSAVVRLALNRLADQLSPAQVIAELQRNAAGHTGPGRKRA
SIO_010081: CKJ54_RS24765
subclass of: SO_0000673
so part of: CKJ54_RS24765
location: 15576..16004
location: region:15576-16004:1
so has part: feature:15576-16004:1:exon

WP_157746224.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15576-16004:1:exon

CKJ54_RS24770
type: Gene
subclass of: SO_0000704
RO_0002162: 701042
locus tag: CKJ54_RS24770
old locus tag: CKJ54_24770
so part of: sequence
location: complement(16223..16909)
location: region:16223-16909:-1
so has part: feature:16223-16909:-1:exon
subclass of: SO_0000010

position:16223:-1
position: 16223
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16909:-1
position: 16909
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16223-16909:-1:exon

CKJ54_RS24770
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 701042
locus tag: CKJ54_RS24770
old locus tag: CKJ54_24770
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011562896.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTVSSFVHPAQRAVDDAYRRTRGPVAFLDESYQAPDAVAAHSRTFYIFTAVVVDLKDMVSLRGGLGRIAGGSHWHTSDALKTSQGCVQTREMLDYLAEGSEACVIAHQVQVDAADTDAEGARRACYRGLAIELAAGRAGVWDPVDLLVLEERNQRNFKNKDQTNHRELVSEQLIPRNTRLLQTSPAAERLLWLPDLVSSAFRRTITHRDATSTLFDVIKEQVHFVTPA
SIO_010081: CKJ54_RS24770
subclass of: SO_0000673
so part of: CKJ54_RS24770
location: complement(16223..16909)
location: region:16223-16909:-1
so has part: feature:16223-16909:-1:exon

WP_244185720.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16223-16909:-1:exon

CKJ54_RS24775
type: Gene
subclass of: SO_0000704
RO_0002162: 701042
locus tag: CKJ54_RS24775
old locus tag: CKJ54_24775
so part of: sequence
location: complement(16906..18468)
location: region:16906-18468:-1
so has part: feature:16906-18468:-1:exon
subclass of: SO_0000010

position:16906:-1
position: 16906
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18468:-1
position: 18468
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16906-18468:-1:exon

CKJ54_RS24775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 701042
locus tag: CKJ54_RS24775
old locus tag: CKJ54_24775
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEEERTSGDEAECEPKDSPPRREALRPPGRFPAVSSVADQLIGKTWVAGPGMKVDHFVAGSPGLRSVMDAMVPSASEAASGISKLIGGDHLAQVGADAGFKLTDLWANRSGRVWDELHAGQKLTDLWAKATRPVWDGLHAGSGLGAELAGEAAARAKEFMTDLGMELAGLRADGPLARSVTPVWEGLTSPASELAASFLPAGPQPSVLSGFTSGIAEKMLAGANVGSFAGVDLGLPSRFVADPLGKLGGPAFSGEQWPWSKWSGASVFDGLTAAMHRHAQGLSSWMETTHRAAMDALWRAPEQSVATMLQSFSTLADQGVAWGWRALGAALRARRAVLRGDLEAIVRFLREWLGFQKTPHTLVDAASAVLLEEAAWLPAGLAGDDKVVPLIKKLTVREHRNFRLLGDTQLRGRPVDSLDREVPISRDNTVRVPLVETVPAPPPPAGADDLSDPRLVWIIGRLTERERAILQIRAEKARNWPDTAAMSGATLAEVEKLRRKVKRLSRSADVTAAVEARAAG
SIO_010081: CKJ54_RS24775
subclass of: SO_0000673
so part of: CKJ54_RS24775
location: complement(16906..18468)
location: region:16906-18468:-1
so has part: feature:16906-18468:-1:exon

WP_157746225.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16906-18468:-1:exon

CKJ54_RS24780
type: Gene
subclass of: SO_0000704
RO_0002162: 701042
locus tag: CKJ54_RS24780
old locus tag: CKJ54_24780
so part of: sequence
location: 18997..19209
location: region:18997-19209:1
so has part: feature:18997-19209:1:exon
subclass of: SO_0000010

position:18997:1
position: 18997
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19209:1
position: 19209
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18997-19209:1:exon

CKJ54_RS24780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 701042
locus tag: CKJ54_RS24780
old locus tag: CKJ54_24780
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005149417.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: toxin-antitoxin system
translation: MTQSRCTHKGDRAQIMARPDRIVYDIVKRESAARGIPMGQYVADVLASHVGHPELVRELNKDTEVLPLAM
SIO_010081: CKJ54_RS24780
subclass of: SO_0000673
so part of: CKJ54_RS24780
location: 18997..19209
location: region:18997-19209:1
so has part: feature:18997-19209:1:exon

WP_095578350.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18997-19209:1:exon