Macrococcus equipercicus strain Epi0143-OL plasmid pEpi0143-OL-1, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae; Macrococcus.
Complete Genome Sequences of Macrococcus spp. from dog and cattle
Submitted (28-APR-2021) Institute of Veterinary Bacteriology, University of Bern, Langgassstrasse 122, Bern 3012, Switzerland
REFSEQ INFORMATION: The reference sequence is identical to\nCP073810.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 300x\nSequencing Technology :: Oxford Nanopore MinION; Illumina NovaSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 07/21/2023 04:16:28\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,340\nCDSs (total) :: 2,256\nGenes (coding) :: 2,237\nCDSs (with protein) :: 2,237\nGenes (RNA) :: 84\nrRNAs :: 6, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 5, 5 (5S, 16S, 23S)\ntRNAs :: 64\nncRNAs :: 4\nPseudo Genes (total) :: 19\nCDSs (without protein) :: 19\nPseudo Genes (ambiguous residues) :: 0 of 19\nPseudo Genes (frameshifted) :: 2 of 19\nPseudo Genes (incomplete) :: 18 of 19\nPseudo Genes (internal stop) :: 4 of 19\nPseudo Genes (multiple problems) :: 4 of 19\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF025107.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012655843.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF015397.2
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012655831.1
COORDINATES: similar to AA sequence:RefSeq:WP_012655832.1
COORDINATES: similar to AA sequence:RefSeq:WP_019835095.1
type I toxin-antitoxin system Fst family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_002449206.1
CadD family cadmium resistance transporter
COORDINATES: similar to AA sequence:RefSeq:WP_012657303.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_012655834.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012656145.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015534.2
GO:0008236 - serine-type peptidase activity [Evidence IEA]
Type 1 glutamine amidotransferase-like domain-containing protein