Macrococcus caseolyticus strain FDAARGOS_868 plasmid unnamed, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae; Macrococcus.
FDA dAtabase for Regulatory Grade micrObial Sequences (FDA-ARGOS): Supporting development and validation of Infectious Disease Dx tests
Submitted (02-DEC-2020) Center for Devices and Radiological Health, US Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993-0002, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP065730.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRT v. 2.3.0, HGAP v. 3\nGenome Coverage :: 1864x\nSequencing Technology :: Pacbio; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/28/2022 02:41:44\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,319\nCDSs (total) :: 2,242\nGenes (coding) :: 2,218\nCDSs (with protein) :: 2,218\nGenes (RNA) :: 77\nrRNAs :: 6, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 5, 5 (5S, 16S, 23S)\ntRNAs :: 57\nncRNAs :: 4\nPseudo Genes (total) :: 24\nCDSs (without protein) :: 24\nPseudo Genes (ambiguous residues) :: 0 of 24\nPseudo Genes (frameshifted) :: 10 of 24\nPseudo Genes (incomplete) :: 10 of 24\nPseudo Genes (internal stop) :: 6 of 24\nPseudo Genes (multiple problems) :: 2 of 24\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF012297.2
GO:0004623 - phospholipase A2 activity [Evidence IEA]
GO:0050482 - arachidonic acid secretion [Evidence IEA]; GO:0006644 - phospholipid metabolic process [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF039499.1
COORDINATES: similar to AA sequence:RefSeq:WP_002487748.1
COORDINATES: similar to AA sequence:RefSeq:WP_014614717.1
COORDINATES: similar to AA sequence:RefSeq:WP_003226981.1
GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
GO:0031179 - peptide modification [Evidence IEA]
YydG family radical SAM peptide epimerase
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_019716319.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002511726.1
COORDINATES: protein motif:HMM:NF012311.2
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012655877.1
COORDINATES: similar to AA sequence:RefSeq:WP_012655876.1
COORDINATES: similar to AA sequence:RefSeq:WP_006737096.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013579.2
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012655862.1
COORDINATES: similar to AA sequence:RefSeq:WP_012655861.1
COORDINATES: similar to AA sequence:RefSeq:WP_012655860.1
COORDINATES: similar to AA sequence:RefSeq:WP_012655859.1
DUF3991 and TOPRIM domain-containing protein
COORDINATES: protein motif:HMM:NF014566.2
CPBP family intramembrane metalloprotease
COORDINATES: similar to AA sequence:RefSeq:WP_012655857.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003917 - DNA topoisomerase type I (single strand cut, ATP-independent) activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012655856.1
COORDINATES: similar to AA sequence:RefSeq:WP_012655854.1
COORDINATES: similar to AA sequence:RefSeq:WP_012655853.1
COORDINATES: similar to AA sequence:RefSeq:WP_012655852.1
COORDINATES: similar to AA sequence:RefSeq:WP_012655851.1
COORDINATES: similar to AA sequence:RefSeq:WP_012655850.1
COORDINATES: similar to AA sequence:RefSeq:WP_012655849.1
COORDINATES: similar to AA sequence:RefSeq:WP_012655847.1
COORDINATES: similar to AA sequence:RefSeq:WP_020006632.1
type I toxin-antitoxin system Fst family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_012655846.1
COORDINATES: protein motif:HMM:NF014581.2
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012655907.1
COORDINATES: similar to AA sequence:RefSeq:WP_012655906.1
COORDINATES: similar to AA sequence:RefSeq:WP_012655905.1
COORDINATES: similar to AA sequence:RefSeq:WP_012655904.1
GO:0018262 - isopeptide cross-linking [Evidence IEA]
isopeptide-forming domain-containing fimbrial protein
COORDINATES: similar to AA sequence:RefSeq:WP_012655899.1
COORDINATES: similar to AA sequence:RefSeq:WP_012655898.1
COORDINATES: similar to AA sequence:RefSeq:WP_012655897.1
primase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012655895.1
COORDINATES: similar to AA sequence:RefSeq:WP_012656145.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012655894.1
COORDINATES: protein motif:HMM:NF015935.2
COORDINATES: similar to AA sequence:RefSeq:WP_086558285.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012655886.1
COORDINATES: protein motif:HMM:NF020438.2
COORDINATES: similar to AA sequence:RefSeq:WP_012655882.1