Thermoanaerobacterium thermosaccharolyticum M0795 plasmid pTHETHE01, complete sequence.
Thermoanaerobacterium thermosaccharolyticum M0795
Bacteria; Bacillota; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermoanaerobacterium.
Complete sequence of plasmid of Thermoanaerobacterium thermosaccharolyticum M0795
Submitted (13-MAR-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP003067.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4092419\nSource DNA and organism available from Joe Shaw (jshaw@mascoma.com)\nContacts: Joe Shaw (jshaw@mascoma.com)\n Tanja Woyke (microbe@cuba.jgi-psf.org)\nAnnotation done by JGI-ORNL and JGI-PGF\nFinishing done by JGI-LANL\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. it is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##MIGS-Data-START##\ninvestigation_type :: bacteria_archaea\nproject_name :: Thermoanaerobacterium thermosaccharolyticum\n M0795\ncollection_date :: Missing\nlat_lon :: Missing\ndepth :: Missing\nalt_elev :: Missing\ncountry :: USA\nenvironment :: Missing\nnum_replicons :: 2\nref_biomaterial :: Missing\nbiotic_relationship :: Free living\ntrophic_level :: Missing\nrel_to_oxygen :: Obligate anaerobe\nisol_growth_condt :: Missing\nsequencing_meth :: WGS\nassembly :: Newbler v. 2.3\nfinishing_strategy :: Finished\nGOLD Stamp ID :: Gi08486\nGene Calling Method :: GenePrimp 1.4, Prodigal\nIsolation Comments :: isolated by Justine Folden for Mascoma\n Corporation\nCell Shape :: Rod-shaped\nMotility :: Motile\nSporulation :: Sporulating\nTemperature Range :: Thermophile\nTemperature Optimum :: 55-60C\nGram Staining :: Gram+\nDiseases :: None\n##MIGS-Data-END##\n\n##Genome-Assembly-Data-START##\nFinishing Goal :: Finished\nCurrent Finishing Status :: Finished\nAssembly Method :: Newbler v. 2.3\nGenome Coverage :: 30x\nSequencing Technology :: 454/Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 06/11/2023 10:24:46\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,898\nCDSs (total) :: 2,821\nGenes (coding) :: 2,790\nCDSs (with protein) :: 2,790\nGenes (RNA) :: 77\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 57\nncRNAs :: 5\nPseudo Genes (total) :: 31\nCDSs (without protein) :: 31\nPseudo Genes (ambiguous residues) :: 0 of 31\nPseudo Genes (frameshifted) :: 11 of 31\nPseudo Genes (incomplete) :: 16 of 31\nPseudo Genes (internal stop) :: 12 of 31\nPseudo Genes (multiple problems) :: 8 of 31\nCRISPR Arrays :: 4\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_008713133.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014759567.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759568.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759569.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759570.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759571.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759572.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759573.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759574.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759575.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759576.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759577.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759578.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759579.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759580.1
GO:0003676 - nucleic acid binding [Evidence IEA]
S1 RNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014759582.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759583.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759585.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759586.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759587.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759588.1
type II secretion system F family protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_014759590.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759591.1
PQQ-binding-like beta-propeller repeat protein
COORDINATES: similar to AA sequence:RefSeq:WP_014759592.1
copper amine oxidase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014759593.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759594.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759595.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759596.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759597.1
COORDINATES: protein motif:HMM:NF015947.2
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF014069.2
COORDINATES: similar to AA sequence:RefSeq:WP_014759599.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759600.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759601.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759602.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759603.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759605.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759606.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759607.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759608.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759609.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759610.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759611.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759612.1
GO:0004519 - endonuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014759613.1
GO:0004170 - dUTP diphosphatase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
GO:0006226 - dUMP biosynthetic process [Evidence IEA]; GO:0046081 - dUTP catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014759614.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759615.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759616.1
aspartyl-phosphate phosphatase Spo0E family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014759617.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759618.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014759620.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759621.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759622.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003869740.1
GO:0030261 - chromosome condensation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014759624.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759625.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759626.1
GO:0000166 - nucleotide binding [Evidence IEA]
GO:0030541 - plasmid partitioning [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014759627.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759628.1
host-nuclease inhibitor Gam family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014759629.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759630.1
COORDINATES: similar to AA sequence:RefSeq:WP_004399540.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006351 - DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014759632.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759633.1
GO:0009360 - DNA polymerase III complex [Evidence IEA]
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014759634.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759635.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759636.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759637.1
GO:0016799 - hydrolase activity, hydrolyzing N-glycosyl compounds [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
ADP-ribosylglycohydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014759638.1
COORDINATES: similar to AA sequence:RefSeq:WP_015312036.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759640.1
GO:0006270 - DNA replication initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014759641.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759642.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759643.1
TraM recognition domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014759644.1
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014759645.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009052284.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759508.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759509.1
polynucleotide adenylyltransferase region
COORDINATES: similar to AA sequence:RefSeq:WP_014759510.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759511.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759512.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759513.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014759514.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759515.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759516.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759517.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759518.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759519.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759520.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759521.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759522.1
COORDINATES: protein motif:HMM:NF015461.2
GO:0005576 - extracellular region [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014759523.1
GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF039653.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759525.1
COORDINATES: protein motif:HMM:NF013632.2
GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014759527.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759528.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759529.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759530.1
COORDINATES: similar to AA sequence:RefSeq:WP_013787443.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014759533.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759534.1
GO:0008641 - ubiquitin-like modifier activating enzyme activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014759535.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759536.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759537.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759538.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759539.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759540.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759541.1
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014759542.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759543.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759545.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759546.1
CRISPR system precrRNA processing endoribonuclease RAMP protein Cas6
COORDINATES: similar to AA sequence:RefSeq:WP_014759547.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759548.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759549.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759550.1
COORDINATES: protein motif:HMM:NF017355.2
toxin-antitoxin system HicB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_014759552.1
COORDINATES: similar to AA sequence:RefSeq:WP_015908757.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014759554.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759555.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759556.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759557.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759558.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759559.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759560.1
COORDINATES: similar to AA sequence:RefSeq:WP_003512380.1
COORDINATES: similar to AA sequence:RefSeq:WP_013788504.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759564.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759565.1