Ruminococcus albus 7 = DSM 20455 plasmid pRUMAL03, complete sequence.
type: Entry
definition: Ruminococcus albus 7 = DSM 20455 plasmid pRUMAL03, complete sequence.
sequence version: NC_014826.1
sequence date: 2023-08-02
sequence: sequence
division: CON
label: NC_014826.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN00016988
keyword: GSC:MIGS:2.1
keyword: RefSeq
source: Ruminococcus albus 7 = DSM 20455
organism: Ruminococcus albus 7 = DSM 20455
taxonomy: Bacteria; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP002406.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4085694\nSource DNA and organism available from David Mead\n(dmead@lucigen.com)\nContacts: David Mead (dmead@lucigen.com)\n Tanja Woyke (microbe@cuba.jgi-psf.org)\nAnnotation done by JGI-ORNL and JGI-PGF\nFinishing done by JGI-LANL\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. it is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##MIGS-Data-START##\ninvestigation_type :: bacteria_archaea\nproject_name :: Ruminococcus albus 7\ncollection_date :: Missing\nlat_lon :: Missing\ndepth :: Missing\nalt_elev :: Missing\ncountry :: Missing\nenvironment :: Host\nnum_replicons :: 5\nref_biomaterial :: Missing\nbiotic_relationship :: Free living\ntrophic_level :: Missing\nrel_to_oxygen :: Anaerobe\nisol_growth_condt :: Missing\nsequencing_meth :: WGS\nassembly :: Newbler v. 2.3 (pre-release)\nfinishing_strategy :: Finished\nGOLD Stamp ID :: Gi07008\nGene Calling Method :: JGI-ORNL pipeline\nCell Shape :: Coccus-shaped\nMotility :: Nonmotile\nSporulation :: Nonsporulating\nTemperature Range :: Mesophile\nTemperature Optimum :: 40C\nGram Staining :: Gram+\nDiseases :: None\n##MIGS-Data-END##\n\n##Genome-Assembly-Data-START##\nFinishing Goal :: Finished\nCurrent Finishing Status :: Finished\nAssembly Method :: Newbler v. 2.3\nGenome Coverage :: 30x\nSequencing Technology :: 454, Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI …

sequence
subclass of: SO_0000155
sequence length: 15907
topology: circular
so has quality: SO_0000988
location: 1..15907
location: region:1-15907:1
RO_0002162: 697329

NC_014826
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN00016988
type: BioSample
SIO_000068: biosample

1
title: Complete sequence of plasmid3 of Ruminococcus albus 7
author: Lucas, S.
author: Copeland, A.
author: Lapidus, A.
author: Cheng, J.-F.
author: Bruce, D.
author: Goodwin, L.
author: Pitluck, S.
author: Chertkov, O.
author: Detter, J.C.
author: Han, C.
author: Tapia, R.
author: Land, M.
author: Hauser, L.
author: Kyrpides, N.
author: Ivanova, N.
author: Ovchinnikova, G.
author: Weimer, P.
author: Mead, D.
author: Woyke, T.
journal: Unpublished

2
title: Direct Submission
author: Lucas, S.
author: Copeland, A.
author: Lapidus, A.
author: Cheng, J.-F.
author: Bruce, D.
author: Goodwin, L.
author: Pitluck, S.
author: Chertkov, O.
author: Detter, J.C.
author: Han, C.
author: Tapia, R.
author: Land, M.
author: Hauser, L.
author: Kyrpides, N.
author: Ivanova, N.
author: Ovchinnikova, G.
author: Weimer, P.
author: Mead, D.
author: Woyke, T.
journal: Submitted (17-DEC-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15907:1
position: 15907
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15907:1:source
so part of: sequence
organism: Ruminococcus albus 7 = DSM 20455
mol type: genomic DNA
strain: 7
type material: type strain of Ruminococcus albus
plasmid: pRUMAL03

697329
type: Taxonomy
SIO_000068: taxonomy

RUMAL_RS20265
type: Gene
subclass of: SO_0000704
RO_0002162: 697329
locus tag: RUMAL_RS20265
old locus tag: Rumal_3988
so part of: sequence
location: 177..941
location: region:177-941:1
so has part: feature:177-941:1:exon
subclass of: SO_0000010

position:177:1
position: 177
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:941:1
position: 941
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:177-941:1:exon

RUMAL_RS20265
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 697329
locus tag: RUMAL_RS20265
old locus tag: Rumal_3988
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005920917.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MQRIFGYCRISRPTQNIERQERNIIKSYPTARIYKEAYTGTKTSGRKELEKLLKQVQSGDMIVFDSVSRMSRNAAEGVELYLQLYEQGVELVFLKEPHINTSTYKQALSRDVPMIGEDVDLILQGVNAYLKRLAVRQIELAFGQAQKEVDDLHQRTAEGIETARRNGKQIGQRKGATLNVKKAAAAKKIIRTSCKTFGGTLTDEQCAAAAGICRKTYYKYKAELRREFEAEGLQMTLDEVSGQAPQGTKDTNAL
SIO_010081: RUMAL_RS20265
subclass of: SO_0000673
so part of: RUMAL_RS20265
location: 177..941
location: region:177-941:1
so has part: feature:177-941:1:exon

WP_013483948.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:177-941:1:exon

RUMAL_RS22025
type: Gene
subclass of: SO_0000704
RO_0002162: 697329
locus tag: RUMAL_RS22025
old locus tag: Rumal_3990
so part of: sequence
location: complement(1245..1403)
location: region:1245-1403:-1
so has part: feature:1245-1403:-1:exon
subclass of: SO_0000010

position:1245:-1
position: 1245
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1403:-1
position: 1403
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1245-1403:-1:exon

RUMAL_RS22025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 697329
locus tag: RUMAL_RS22025
old locus tag: Rumal_3990
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRHKIIRIIIGIIWTVAAVIQITKGEKVMGMMFGAATAAFLISAFTLENEDK
SIO_010081: RUMAL_RS22025
subclass of: SO_0000673
so part of: RUMAL_RS22025
location: complement(1245..1403)
location: region:1245-1403:-1
so has part: feature:1245-1403:-1:exon

WP_013483950.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1245-1403:-1:exon

RUMAL_RS20270
type: Gene
subclass of: SO_0000704
RO_0002162: 697329
locus tag: RUMAL_RS20270
old locus tag: Rumal_3991
so part of: sequence
location: complement(1405..1731)
location: region:1405-1731:-1
so has part: feature:1405-1731:-1:exon
subclass of: SO_0000010

position:1405:-1
position: 1405
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1731:-1
position: 1731
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1405-1731:-1:exon

RUMAL_RS20270
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 697329
locus tag: RUMAL_RS20270
old locus tag: Rumal_3991
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLRSLKVNLPLSVLAVIIIAELSVFAIAVIILIAIVGKTEIFNSDPVRADKSSLAVMTGLMISILTLVYSKAWTLAAFSITLSAVVIFKEREQTKNLFRCSKLIKGAV
SIO_010081: RUMAL_RS20270
subclass of: SO_0000673
so part of: RUMAL_RS20270
location: complement(1405..1731)
location: region:1405-1731:-1
so has part: feature:1405-1731:-1:exon

WP_162145127.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1405-1731:-1:exon

RUMAL_RS20275
type: Gene
subclass of: SO_0000704
RO_0002162: 697329
locus tag: RUMAL_RS20275
old locus tag: Rumal_3992
so part of: sequence
location: complement(2482..3471)
location: region:2482-3471:-1
so has part: feature:2482-3471:-1:exon
subclass of: SO_0000010

position:2482:-1
position: 2482
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3471:-1
position: 3471
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2482-3471:-1:exon

RUMAL_RS20275
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 697329
locus tag: RUMAL_RS20275
old locus tag: Rumal_3992
inference: COORDINATES: protein motif:HMM:NF024804.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HTH domain-containing protein
translation: MQTIKDWIFKALYRTKEIPKSALTLEIYLASHCDVNGRISIYHRDIEETLCIDTKTFYASVKFLENTFVTINLPNGNKIKTPLIIREPKDKNCNAEIILKIPYNDFEMAYAGEDKPFSNYINIDFVWLKAQSLKTMHHAEIRVLMYLFFRLSKSGDVTNDLVFKSKFTAYKAIAEQLGISVQTVRKAIAHLRKAGIIKIGCSVEYSNNGHSLAFPVHRTTFSLSECTVAEIQNPVTASRDQYGRNKMRYTTEKHFRSDRHTVRNILRRKKKSNVSLQELNDIAALVHQYRTTAASLGRKIESVIEQAISNCVIIKAKLVHSSIKDILCT
SIO_010081: RUMAL_RS20275
subclass of: SO_0000673
so part of: RUMAL_RS20275
location: complement(2482..3471)
location: region:2482-3471:-1
so has part: feature:2482-3471:-1:exon

WP_013483952.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2482-3471:-1:exon

RUMAL_RS20280
type: Gene
subclass of: SO_0000704
RO_0002162: 697329
locus tag: RUMAL_RS20280
old locus tag: Rumal_3993
so part of: sequence
location: 3922..4626
location: region:3922-4626:1
so has part: feature:3922-4626:1:exon
subclass of: SO_0000010

position:3922:1
position: 3922
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4626:1
position: 4626
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3922-4626:1:exon

RUMAL_RS20280
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 697329
locus tag: RUMAL_RS20280
old locus tag: Rumal_3993
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSKTIKQIADELQVSKQAVWQRVKRSSELSAMLYEHSQTINGTVVIDEDMEKVLCELYPERPTTINVDETIKNVDINGVNVDGMSKEVDVNVDETSICKGVNVDDVDINSVNSKKNVDADVDDKHANVDVNDMDVDVNTLIETLQSTVNTLKQQLTVKDKQIDDLSAMLKSSQEQQATLVTALSAAQALHAGTMQERLTEHSENSEIQREVNEAEQKSQSVKKGFFARIFRKGS
SIO_010081: RUMAL_RS20280
subclass of: SO_0000673
so part of: RUMAL_RS20280
location: 3922..4626
location: region:3922-4626:1
so has part: feature:3922-4626:1:exon

WP_013483953.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3922-4626:1:exon

RUMAL_RS22030
type: Gene
subclass of: SO_0000704
RO_0002162: 697329
locus tag: RUMAL_RS22030
old locus tag: Rumal_3994
so part of: sequence
location: complement(4910..5074)
location: region:4910-5074:-1
so has part: feature:4910-5074:-1:exon
subclass of: SO_0000010

position:4910:-1
position: 4910
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5074:-1
position: 5074
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4910-5074:-1:exon

RUMAL_RS22030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 697329
locus tag: RUMAL_RS22030
old locus tag: Rumal_3994
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGFFSMVFSFIIGILLIVFGFTRKSVSKAALIRAVTLIPGFALVGLAIWLGLPK
SIO_010081: RUMAL_RS22030
subclass of: SO_0000673
so part of: RUMAL_RS22030
location: complement(4910..5074)
location: region:4910-5074:-1
so has part: feature:4910-5074:-1:exon

WP_013483954.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4910-5074:-1:exon

RUMAL_RS20285
type: Gene
subclass of: SO_0000704
RO_0002162: 697329
locus tag: RUMAL_RS20285
old locus tag: Rumal_3995
so part of: sequence
location: complement(5078..5506)
location: region:5078-5506:-1
so has part: feature:5078-5506:-1:exon
subclass of: SO_0000010

position:5078:-1
position: 5078
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5506:-1
position: 5506
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5078-5506:-1:exon

RUMAL_RS20285
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 697329
locus tag: RUMAL_RS20285
old locus tag: Rumal_3995
inference: COORDINATES: protein motif:HMM:NF012235.2
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATP-binding cassette domain-containing protein
translation: MAEWRNRKIGFVLQESALIDSISIEDNIRLPLLYASPDRKDFSEELESIAEKIGIKHILKKKPLECSGGEKARAVFARAVIMRPPLILCDEPTASLDGENKENILSLLSRMNKEYNTTVITVTHDMEVAERHQRIIKLEREM
SIO_010081: RUMAL_RS20285
subclass of: SO_0000673
so part of: RUMAL_RS20285
location: complement(5078..5506)
location: region:5078-5506:-1
so has part: feature:5078-5506:-1:exon

WP_080557330.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5078-5506:-1:exon

RUMAL_RS20290
type: Gene
subclass of: SO_0000704
RO_0002162: 697329
locus tag: RUMAL_RS20290
old locus tag: Rumal_3996
so part of: sequence
location: 6062..6775
location: region:6062-6775:1
so has part: feature:6062-6775:1:exon
subclass of: SO_0000010

position:6062:1
position: 6062
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6775:1
position: 6775
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6062-6775:1:exon

RUMAL_RS20290
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 697329
locus tag: RUMAL_RS20290
old locus tag: Rumal_3996
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002847635.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: LytTR family DNA-binding domain-containing protein
translation: MKIAICDDQMAMHTELKKHLENYAQKRNLIMIYNDYTNGFDLISSQNEYDIIFMDYQMAEIDGLETARQIRKKNTDTTIIFLTSFPDIVFDTFEVNAYRFLVKPIDDARLEAALDSYLSDNDESNFILIKTDESNQKININDIIYIEASDKYCNIRTNEGTVLFKKTLSEIEKMLPEDKFFRCHRTYLVGFRHIVSHTSTDVLFDNKEKALISRVKLPPFKKAFTNYIKRYNFQKGS
SIO_010081: RUMAL_RS20290
subclass of: SO_0000673
so part of: RUMAL_RS20290
location: 6062..6775
location: region:6062-6775:1
so has part: feature:6062-6775:1:exon

WP_013483955.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6062-6775:1:exon

RUMAL_RS20295
type: Gene
subclass of: SO_0000704
RO_0002162: 697329
locus tag: RUMAL_RS20295
old locus tag: Rumal_3997
so part of: sequence
location: 6778..8079
location: region:6778-8079:1
so has part: feature:6778-8079:1:exon
subclass of: SO_0000010

position:6778:1
position: 6778
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8079:1
position: 8079
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6778-8079:1:exon

RUMAL_RS20295
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 697329
locus tag: RUMAL_RS20295
old locus tag: Rumal_3997
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002847577.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GHKL domain-containing protein
translation: MTTVSYLVMLANILEQLMFVTLARTICDFKSSRIRYLGYFLLILTLLPVPILMNKPDFCSKEMGLILQLIYVFGRIPAYSVLFEEFSQRVLYIFLLSQWPPQIYLNICKAFIKDYELCNLIAFSADILILFLIFIYIKRKKIESMLHQIIKSLPKRLYINILLLLFIAAIFVMGETKPDHEHYYKKYILPSMMGLIVFLFSIVKISISEIEKKTTIDLLSKQVENEVKYYEKINTIYGEFRSFRHDFKNHVICLRSLIESNEKENALEYINEIEGLSSVEKKQYNTGNIIIDALLNDKNDRAAAINTKIVFSGMVPTTGISNVDLCIIMANAIDNAIEACAKDTSEKPKEINAEASFRQGYFFFKITNPIYEAVEIKSNNTITTSKSDKDRHGFGVTNILRTVQKYDGEAELSADDNKFTLDLNLVLKPEIIK
SIO_010081: RUMAL_RS20295
subclass of: SO_0000673
so part of: RUMAL_RS20295
location: 6778..8079
location: region:6778-8079:1
so has part: feature:6778-8079:1:exon

WP_013483956.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6778-8079:1:exon

RUMAL_RS20300
type: Gene
subclass of: SO_0000704
RO_0002162: 697329
locus tag: RUMAL_RS20300
old locus tag: Rumal_3998
so part of: sequence
location: 8279..8740
location: region:8279-8740:1
so has part: feature:8279-8740:1:exon
subclass of: SO_0000010

position:8279:1
position: 8279
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8740:1
position: 8740
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8279-8740:1:exon

RUMAL_RS20300
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 697329
locus tag: RUMAL_RS20300
old locus tag: Rumal_3998
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002847574.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQFIEHINIYAENLITYTASIKKSEIYKIIQHINDNLSALNIKVAGKFIFTFKEDKNSDEVQPVEILIPVKGEIGSSDSYGKKLIFRLINAVMTKHEGSINDISDSEQALKDYIQKNNYEPITNTYYVVIRNGDTFGADCIFEMYIGVNYNSL
SIO_010081: RUMAL_RS20300
subclass of: SO_0000673
so part of: RUMAL_RS20300
location: 8279..8740
location: region:8279-8740:1
so has part: feature:8279-8740:1:exon

WP_013483957.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8279-8740:1:exon

RUMAL_RS22785
type: Gene
subclass of: SO_0000704
RO_0002162: 697329
locus tag: RUMAL_RS22785
old locus tag: Rumal_3999
so part of: sequence
location: complement(8818..8946)
location: region:8818-8946:-1
so has part: feature:8818-8946:-1:exon
subclass of: SO_0000010

position:8818:-1
position: 8818
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8946:-1
position: 8946
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8818-8946:-1:exon

RUMAL_RS22785
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 697329
locus tag: RUMAL_RS22785
old locus tag: Rumal_3999
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKIVICDDMVDETRAFIYKKKRIEPKPESEERLEGQVHFSDI
SIO_010081: RUMAL_RS22785
subclass of: SO_0000673
so part of: RUMAL_RS22785
location: complement(8818..8946)
location: region:8818-8946:-1
so has part: feature:8818-8946:-1:exon

WP_013483958.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8818-8946:-1:exon

RUMAL_RS20305
type: Gene
subclass of: SO_0000704
RO_0002162: 697329
locus tag: RUMAL_RS20305
old locus tag: Rumal_4000
so part of: sequence
location: 9653..9859
location: region:9653-9859:1
so has part: feature:9653-9859:1:exon
subclass of: SO_0000010

position:9653:1
position: 9653
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9859:1
position: 9859
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9653-9859:1:exon

RUMAL_RS20305
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 697329
locus tag: RUMAL_RS20305
old locus tag: Rumal_4000
inference: COORDINATES: protein motif:HMM:NF037972.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: huazacin family RiPP peptide
translation: MELFELMAEEAWSWGAAICGGVCGLGGAAGCAAICGVDGPIPVADASAITASGTAAGGLGALAAGLAS
SIO_010081: RUMAL_RS20305
subclass of: SO_0000673
so part of: RUMAL_RS20305
location: 9653..9859
location: region:9653-9859:1
so has part: feature:9653-9859:1:exon

WP_013483959.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9653-9859:1:exon

RUMAL_RS20310
type: Gene
subclass of: SO_0000704
RO_0002162: 697329
locus tag: RUMAL_RS20310
old locus tag: Rumal_4001
so part of: sequence
location: 9898..10104
location: region:9898-10104:1
so has part: feature:9898-10104:1:exon
subclass of: SO_0000010

position:9898:1
position: 9898
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10104:1
position: 10104
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9898-10104:1:exon

RUMAL_RS20310
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 697329
locus tag: RUMAL_RS20310
old locus tag: Rumal_4001
inference: COORDINATES: protein motif:HMM:NF037972.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: huazacin family RiPP peptide
translation: MELFELMAEEAWSWGAAICGGVCGLGGAAGCAAICGVDGPIPVADASAITASGTAAGGLGALAAGLAS
SIO_010081: RUMAL_RS20310
subclass of: SO_0000673
so part of: RUMAL_RS20310
location: 9898..10104
location: region:9898-10104:1
so has part: feature:9898-10104:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9898-10104:1:exon

RUMAL_RS20315
type: Gene
subclass of: SO_0000704
RO_0002162: 697329
locus tag: RUMAL_RS20315
old locus tag: Rumal_4002
so part of: sequence
location: 10398..11810
location: region:10398-11810:1
so has part: feature:10398-11810:1:exon
subclass of: SO_0000010

position:10398:1
position: 10398
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11810:1
position: 11810
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10398-11810:1:exon

RUMAL_RS20315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 697329
locus tag: RUMAL_RS20315
old locus tag: Rumal_4002
inference: COORDINATES: protein motif:HMM:NF015983.2
GO function: GO:0003824 - catalytic activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: radical SAM protein
translation: MNNNCNICFKSDSNNEYVFDSDSSVIFEKSQYEKRIDKISKMKKTNQIQNKSYDSHDIEEYILKYGLGQMVLEVTNRCNFRCEYCIFSEHYQGHSKLENENMTLETAIRAIDMYMDLIEKGKIYNPERTPIIGFYGGEPLLNFDLVKKCVEYAKERYKGRVLFSITSNAYLLNDEASKFMAENDFMPIFSLDGPQKIHDSNRKLAGGKGTFERVYQNIRNYARVTNSIPMINSVYDYNTDMEELMEFWSEQNEMVLLSLSPVNPYDTDYYNSFDEKTVKTFFEKKLKLEKYFHELVAKKDDLTSKEKRELNFLNVFLGKPASSVYMKEMFKDPSRSIVKCTGSCVPGDKMFVNVHGDIYPCEKVDKTMIIGNLNSGLDYSVICGYMKEFEAKITSGCSNCSVKNVCSLCYQSLHCESGFCKNAQSCNNMRNSYKELLSRAVSLSEENPAWFSDFTTKYYKEIKELAVVLK
SIO_010081: RUMAL_RS20315
subclass of: SO_0000673
so part of: RUMAL_RS20315
location: 10398..11810
location: region:10398-11810:1
so has part: feature:10398-11810:1:exon

WP_013483960.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10398-11810:1:exon

RUMAL_RS20320
type: Gene
subclass of: SO_0000704
RO_0002162: 697329
locus tag: RUMAL_RS20320
old locus tag: Rumal_4003
so part of: sequence
location: 11807..13048
location: region:11807-13048:1
so has part: feature:11807-13048:1:exon
subclass of: SO_0000010

position:11807:1
position: 11807
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13048:1
position: 13048
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11807-13048:1:exon

RUMAL_RS20320
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 697329
locus tag: RUMAL_RS20320
old locus tag: Rumal_4003
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNYKYFRLYEECYLVNGKEKSCIYDLFNEKVFHVDEDLRKILTLTENNKSFDDVCHELNITTTFLEEKLKEAEKFQVGGFYEKPPAIEKVTLHPDWKDNLFFKLPPQINRAFLELSNECDNNCFFCASDRYSLRFRCMGCGKDPSYNNITISVEKWTEYMKQLYALGVTELYITGGNVFLDVPKLKAVILSAKEIGFRYINVISGNRNINALRQLGEVANGVKFIIQRYLDENYKQLIESDEIIQNIDILDKSEYCFVFLLDYYNKSLVNDIAATVKNKIKQNSFYFDYLLDNQNLTDIQLREIKFTNSKIKLDDFSIKGKYNPCLNSTVTIKADGIITTCPGLKDYPLSKTGDLYEAIKKDNITRYSSLGCNDIEPCNKCEYRYLCSDCRYIEIKNGAQLNQTRICDKCMVG
SIO_010081: RUMAL_RS20320
subclass of: SO_0000673
so part of: RUMAL_RS20320
location: 11807..13048
location: region:11807-13048:1
so has part: feature:11807-13048:1:exon

WP_013483961.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11807-13048:1:exon

RUMAL_RS20325
type: Gene
subclass of: SO_0000704
RO_0002162: 697329
locus tag: RUMAL_RS20325
old locus tag: Rumal_4004
so part of: sequence
location: 13065..13991
location: region:13065-13991:1
so has part: feature:13065-13991:1:exon
subclass of: SO_0000010

position:13065:1
position: 13065
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13991:1
position: 13991
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13065-13991:1:exon

RUMAL_RS20325
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 697329
locus tag: RUMAL_RS20325
old locus tag: Rumal_4004
inference: COORDINATES: protein motif:HMM:NF012235.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter ATP-binding protein
translation: MDNVIEFKNVYKKYDSVNVLENVSFSVKKHDVFGYIGPNGAGKTTSIRLITGLLEPTQGEVKVFGEIPEKNNIKSKIGFCYDNDGLYTNLTAFENMCFFDIVYNDAKGRDKRINELLALVGLEKAVNRRVSEFSRGMKKRLGLARALICSPEILILDEPMIGLDPEGQADIKRIINNIKDKCTIFLSSHNLNDVEELCNRVAILEHRILTDGLLSDILADDTPVVKVTLNEPCTYERLSGLLGSGASDIEISDKTVRIRFSQKPDLNTVTGFLIDKKIGFKEIGIVNSSLREKYFSLVDGENHEHAGN
SIO_010081: RUMAL_RS20325
subclass of: SO_0000673
so part of: RUMAL_RS20325
location: 13065..13991
location: region:13065-13991:1
so has part: feature:13065-13991:1:exon

WP_050793339.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13065-13991:1:exon

RUMAL_RS20330
type: Gene
subclass of: SO_0000704
RO_0002162: 697329
locus tag: RUMAL_RS20330
old locus tag: Rumal_4005
so part of: sequence
location: 13972..14685
location: region:13972-14685:1
so has part: feature:13972-14685:1:exon
subclass of: SO_0000010

position:13972:1
position: 13972
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14685:1
position: 14685
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13972-14685:1:exon

RUMAL_RS20330
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 697329
locus tag: RUMAL_RS20330
old locus tag: Rumal_4005
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNMQAIKAIAYKEKISVKKSIKSLLIINVVFICILLATSIKKSSGFLDEGVTDVSNLLVGSTGYVSIFLSFVTFISTLKFWQEKSMDAIDSLFSLPVSIRKILVGKVAFSMLIGVIGFAVAFITSIIVYAVKFKVFAFSPVAALLMLAISLLLNFSYGIINGFCMWQLSVGKAKIIQGLTYVIFLGGIIGLNGCITADGINMNVVYALIAAVILLAAGAVYSLILANKEKIILNHIE
SIO_010081: RUMAL_RS20330
subclass of: SO_0000673
so part of: RUMAL_RS20330
location: 13972..14685
location: region:13972-14685:1
so has part: feature:13972-14685:1:exon

WP_013483963.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13972-14685:1:exon

RUMAL_RS20335
type: Gene
subclass of: SO_0000704
RO_0002162: 697329
locus tag: RUMAL_RS20335
old locus tag: Rumal_4006
so part of: sequence
location: 14918..15424
location: region:14918-15424:1
so has part: feature:14918-15424:1:exon
subclass of: SO_0000010

position:14918:1
position: 14918
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15424:1
position: 15424
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14918-15424:1:exon

RUMAL_RS20335
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 697329
locus tag: RUMAL_RS20335
old locus tag: Rumal_4006
EC number: 3.4.-.-
inference: COORDINATES: protein motif:HMM:NF014566.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CPBP family intramembrane metalloprotease
translation: MLSTVGYTLWKQRKTRAGSDANTGILSFIILLTVMLCWGLLMRVLIGSQISEGYNEYLRNFTVTSGTFFVLLNGLIIGPISEEIYYRCFYGEMFMSWTDKMKYSAVFTIFITAISFSLSHISIYSNDLMKMIQVFPIGIILGYVNYKKGVLYSIPMHILYNTGLLLIR
SIO_010081: RUMAL_RS20335
subclass of: SO_0000673
so part of: RUMAL_RS20335
location: 14918..15424
location: region:14918-15424:1
so has part: feature:14918-15424:1:exon

WP_157865515.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14918-15424:1:exon