Ruminococcus albus 7 = DSM 20455 plasmid pRUMAL02, complete sequence.
Bacteria; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus.
Complete sequence of plasmid2 of Ruminococcus albus 7
Submitted (17-DEC-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP002405.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4085694\nSource DNA and organism available from David Mead\n(dmead@lucigen.com)\nContacts: David Mead (dmead@lucigen.com)\n Tanja Woyke (microbe@cuba.jgi-psf.org)\nAnnotation done by JGI-ORNL and JGI-PGF\nFinishing done by JGI-LANL\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. it is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##MIGS-Data-START##\ninvestigation_type :: bacteria_archaea\nproject_name :: Ruminococcus albus 7\ncollection_date :: Missing\nlat_lon :: Missing\ndepth :: Missing\nalt_elev :: Missing\ncountry :: Missing\nenvironment :: Host\nnum_replicons :: 5\nref_biomaterial :: Missing\nbiotic_relationship :: Free living\ntrophic_level :: Missing\nrel_to_oxygen :: Anaerobe\nisol_growth_condt :: Missing\nsequencing_meth :: WGS\nassembly :: Newbler v. 2.3 (pre-release)\nfinishing_strategy :: Finished\nGOLD Stamp ID :: Gi07008\nGene Calling Method :: JGI-ORNL pipeline\nCell Shape :: Coccus-shaped\nMotility :: Nonmotile\nSporulation :: Nonsporulating\nTemperature Range :: Mesophile\nTemperature Optimum :: 40C\nGram Staining :: Gram+\nDiseases :: None\n##MIGS-Data-END##\n\n##Genome-Assembly-Data-START##\nFinishing Goal :: Finished\nCurrent Finishing Status :: Finished\nAssembly Method :: Newbler v. 2.3\nGenome Coverage :: 30x\nSequencing Technology :: 454, Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/10/2023 14:27:20\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,128\nCDSs (total) :: 4,038\nGenes (coding) :: 3,991\nCDSs (with protein) :: 3,991\nGenes (RNA) :: 90\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 75\nncRNAs :: 3\nPseudo Genes (total) :: 47\nCDSs (without protein) :: 47\nPseudo Genes (ambiguous residues) :: 0 of 47\nPseudo Genes (frameshifted) :: 15 of 47\nPseudo Genes (incomplete) :: 26 of 47\nPseudo Genes (internal stop) :: 11 of 47\nPseudo Genes (multiple problems) :: 5 of 47\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_019678060.1
GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
GO:0043039 - tRNA aminoacylation [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_019678059.1
GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002850270.1
COORDINATES: similar to AA sequence:RefSeq:WP_015736836.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
autorepressor SdpR family transcription factor
COORDINATES: protein motif:HMM:NF021592.2
GO:0070007 - glutamic-type endopeptidase activity [Evidence IEA]
YhfC family glutamic-type intramembrane protease
COORDINATES: similar to AA sequence:RefSeq:WP_002847691.1
COORDINATES: similar to AA sequence:RefSeq:WP_002852354.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
glycoside hydrolase family 3 N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002852280.1
COORDINATES: similar to AA sequence:RefSeq:WP_002849010.1
GO:0004672 - protein kinase activity [Evidence IEA]
GO:0006468 - protein phosphorylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002850188.1
GO:0015095 - magnesium ion transmembrane transporter activity [Evidence IEA]
GO:0015693 - magnesium ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002850790.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_012819920.1
COORDINATES: protein motif:HMM:NF012622.2
dockerin type I repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002848067.1
COORDINATES: similar to AA sequence:RefSeq:WP_009243188.1
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009984924.1
COORDINATES: similar to AA sequence:RefSeq:WP_009984925.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002850334.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: protein motif:HMM:NF012301.2
COORDINATES: similar to AA sequence:RefSeq:WP_015530747.1
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020005769.1
GO:0009316 - 3-isopropylmalate dehydratase complex [Evidence IEA]
GO:0003861 - 3-isopropylmalate dehydratase activity [Evidence IEA]
GO:0009098 - leucine biosynthetic process [Evidence IEA]
3-isopropylmalate dehydratase small subunit
COORDINATES: similar to AA sequence:RefSeq:WP_002847491.1
COORDINATES: similar to AA sequence:RefSeq:WP_015516589.1
3-isopropylmalate dehydratase large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_002847497.1
COORDINATES: similar to AA sequence:RefSeq:WP_002847492.1
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002847499.1
COORDINATES: similar to AA sequence:RefSeq:WP_003531043.1
GO:0004595 - pantetheine-phosphate adenylyltransferase activity [Evidence IEA]
GO:0015937 - coenzyme A biosynthetic process [Evidence IEA]
pantetheine-phosphate adenylyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_013483696.1
GO:0052913 - 16S rRNA (guanine(966)-N(2))-methyltransferase activity [Evidence IEA]
GO:0031167 - rRNA methylation [Evidence IEA]
16S rRNA (guanine(966)-N(2))-methyltransferase RsmD
COORDINATES: similar to AA sequence:RefSeq:WP_002843918.1
COORDINATES: similar to AA sequence:RefSeq:WP_002848084.1
COORDINATES: protein motif:HMM:NF014404.2
COORDINATES: similar to AA sequence:RefSeq:WP_019678048.1
COORDINATES: similar to AA sequence:RefSeq:WP_009244330.1
COORDINATES: similar to AA sequence:RefSeq:WP_005932634.1
COORDINATES: similar to AA sequence:RefSeq:WP_015515626.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002852174.1
COORDINATES: similar to AA sequence:RefSeq:WP_002851976.1
COORDINATES: similar to AA sequence:RefSeq:WP_013483708.1
homocysteine S-methyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_002852359.1
GO:0008705 - methionine synthase activity [Evidence IEA]
GO:0009086 - methionine biosynthetic process [Evidence IEA]
vitamin B12 dependent-methionine synthase activation domain-containing protein
COORDINATES: protein motif:HMM:NF025716.2
COORDINATES: protein motif:HMM:NF024094.2
COORDINATES: protein motif:HMM:TIGR02937.1
COORDINATES: similar to AA sequence:RefSeq:WP_002600140.1
COORDINATES: similar to AA sequence:RefSeq:WP_002847278.1
COORDINATES: similar to AA sequence:RefSeq:WP_009987810.1
COORDINATES: similar to AA sequence:RefSeq:WP_009987812.1
COORDINATES: similar to AA sequence:RefSeq:WP_009987813.1
GO:0018492 - carbon-monoxide dehydrogenase (acceptor) activity [Evidence IEA]
anaerobic carbon-monoxide dehydrogenase catalytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_009987814.1
COORDINATES: similar to AA sequence:RefSeq:WP_013483718.1
COORDINATES: similar to AA sequence:RefSeq:WP_004436473.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019680072.1
BspA family leucine-rich repeat surface protein
COORDINATES: similar to AA sequence:RefSeq:WP_002851968.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
ATP-dependent Clp protease ATP-binding subunit ClpX
COORDINATES: similar to AA sequence:RefSeq:WP_005941935.1
GO:0009368 - endopeptidase Clp complex [Evidence IEA]
GO:0004176 - ATP-dependent peptidase activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
ATP-dependent Clp endopeptidase proteolytic subunit ClpP
COORDINATES: similar to AA sequence:RefSeq:WP_002852027.1
GO:0005854 - nascent polypeptide-associated complex [Evidence IEA]
GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA]; GO:0051082 - unfolded protein binding [Evidence IEA]
GO:0051083 - 'de novo' cotranslational protein folding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002852107.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002852032.1
COORDINATES: similar to AA sequence:RefSeq:WP_002852269.1
GO:0004795 - threonine synthase activity [Evidence IEA]
GO:0009088 - threonine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002852020.1
GO:0004518 - nuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002852371.1
GO:0003723 - RNA binding [Evidence IEA]; GO:0004523 - RNA-DNA hybrid ribonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009987203.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]
GO:0042254 - ribosome biogenesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002852000.1
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]; GO:0006465 - signal peptide processing [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02227.1
COORDINATES: similar to AA sequence:RefSeq:WP_019678698.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0000311 - plastid large ribosomal subunit [Evidence IEA]
GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002852287.1
TIGR03936 family radical SAM-associated protein
COORDINATES: similar to AA sequence:RefSeq:WP_002852053.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
TIGR03960 family B12-binding radical SAM protein
COORDINATES: similar to AA sequence:RefSeq:WP_013497612.1
COORDINATES: similar to AA sequence:RefSeq:WP_002848961.1
COORDINATES: similar to AA sequence:RefSeq:WP_002848949.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004613797.1
COORDINATES: similar to AA sequence:RefSeq:WP_002848951.1
COORDINATES: similar to AA sequence:RefSeq:WP_008399653.1
metal ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_002848946.1
metal ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_002848929.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002848982.1
COORDINATES: similar to AA sequence:RefSeq:WP_009004820.1
GO:0004061 - arylformamidase activity [Evidence IEA]
GO:0019441 - tryptophan catabolic process to kynurenine [Evidence IEA]
COORDINATES: protein motif:HMM:NF024702.2
leucine-rich repeat domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002850297.1
COORDINATES: similar to AA sequence:RefSeq:WP_002850319.1
COORDINATES: similar to AA sequence:RefSeq:WP_013483876.1
COORDINATES: similar to AA sequence:RefSeq:WP_013483801.1
COORDINATES: similar to AA sequence:RefSeq:WP_007890211.1
COORDINATES: similar to AA sequence:RefSeq:WP_009987347.1
COORDINATES: similar to AA sequence:RefSeq:WP_013483431.1
COORDINATES: similar to AA sequence:RefSeq:WP_015574393.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF027489.2
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF012464.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005591790.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005928812.1
COORDINATES: similar to AA sequence:RefSeq:WP_014546196.1
COORDINATES: protein motif:HMM:NF013782.2
GO:0016790 - thiolester hydrolase activity [Evidence IEA]
GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF021532.2
COORDINATES: similar to AA sequence:RefSeq:WP_002849446.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015558967.1
COORDINATES: similar to AA sequence:RefSeq:WP_013483786.1
COORDINATES: protein motif:HMM:NF012770.2
COORDINATES: protein motif:HMM:NF012870.2
GO:0015074 - DNA integration [Evidence IEA]
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_005342978.1
COORDINATES: similar to AA sequence:RefSeq:WP_005342977.1
COORDINATES: similar to AA sequence:RefSeq:WP_013483808.1
COORDINATES: similar to AA sequence:RefSeq:WP_008754913.1
COORDINATES: similar to AA sequence:RefSeq:WP_013483755.1
COORDINATES: similar to AA sequence:RefSeq:WP_001846105.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_002848140.1
COORDINATES: similar to AA sequence:RefSeq:WP_013483774.1
COORDINATES: similar to AA sequence:RefSeq:WP_013483806.1
COORDINATES: protein motif:HMM:NF013677.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF033516.0
COORDINATES: similar to AA sequence:RefSeq:WP_013483603.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
UDP-N-acetylglucosamine pyrophosphorylase
COORDINATES: protein motif:HMM:NF040112.1
COORDINATES: similar to AA sequence:RefSeq:WP_009988051.1
COORDINATES: similar to AA sequence:RefSeq:WP_009988050.1
COORDINATES: protein motif:HMM:NF015397.2
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002851109.1
plasmid mobilization relaxosome protein MobC
COORDINATES: protein motif:HMM:NF013930.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003896 - DNA primase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
CHC2 zinc finger domain-containing protein
COORDINATES: protein motif:HMM:NF012442.2
COORDINATES: similar to AA sequence:RefSeq:WP_013483766.1
COORDINATES: similar to AA sequence:RefSeq:WP_013483880.1
COORDINATES: similar to AA sequence:RefSeq:WP_013483879.1
COORDINATES: similar to AA sequence:RefSeq:WP_013483878.1
COORDINATES: similar to AA sequence:RefSeq:WP_009300539.1
COORDINATES: similar to AA sequence:RefSeq:WP_015536547.1
COORDINATES: similar to AA sequence:RefSeq:WP_009253310.1
COORDINATES: similar to AA sequence:RefSeq:WP_013497104.1
COORDINATES: protein motif:HMM:NF017528.2
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase.; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013483394.1
COORDINATES: protein motif:HMM:NF024408.2
COORDINATES: protein motif:HMM:NF033517.1
COORDINATES: similar to AA sequence:RefSeq:WP_013483775.1
COORDINATES: protein motif:HMM:NF013540.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013499423.1
COORDINATES: similar to AA sequence:RefSeq:WP_002847192.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO:0003979 - UDP-glucose 6-dehydrogenase activity [Evidence IEA]
GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015552306.1
4Fe-4S dicluster domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004851618.1
Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain
COORDINATES: protein motif:HMM:NF026018.2
polysaccharide biosynthesis C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF016145.2
polysaccharide pyruvyl transferase family protein
COORDINATES: protein motif:HMM:NF012744.2
COORDINATES: similar to AA sequence:RefSeq:WP_015525711.1
GO:0008879 - glucose-1-phosphate thymidylyltransferase activity [Evidence IEA]
GO:0019305 - dTDP-rhamnose biosynthetic process [Evidence IEA]; GO:0009243 - O antigen biosynthetic process [Evidence IEA]
glucose-1-phosphate thymidylyltransferase RfbA
COORDINATES: similar to AA sequence:RefSeq:WP_006856689.1
GO:0008830 - dTDP-4-dehydrorhamnose 3,5-epimerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015568287.1
GO:0008831 - dTDP-4-dehydrorhamnose reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014072727.1
GO:0008460 - dTDP-glucose 4,6-dehydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018366066.1
glycoside hydrolase family 99-like domain-containing protein
COORDINATES: protein motif:HMM:NF012745.2
COORDINATES: protein motif:HMM:NF012360.2
COORDINATES: protein motif:HMM:TIGR04370.1
COORDINATES: similar to AA sequence:RefSeq:WP_005793462.1
COORDINATES: protein motif:HMM:NF025072.2
COORDINATES: similar to AA sequence:RefSeq:WP_004842829.1
COORDINATES: protein motif:HMM:NF036822.2
COORDINATES: protein motif:HMM:NF014453.2
COORDINATES: protein motif:HMM:NF012493.2
COORDINATES: similar to AA sequence:RefSeq:WP_002848979.1
COORDINATES: similar to AA sequence:RefSeq:WP_002848956.1
COORDINATES: protein motif:HMM:NF019997.2
COORDINATES: protein motif:HMM:NF024361.2
COORDINATES: protein motif:HMM:NF012403.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0140658 - ATP-dependent chromatin remodeler activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013311.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: protein motif:HMM:NF037639.2
SpaA isopeptide-forming pilin-related protein
COORDINATES: similar to AA sequence:RefSeq:WP_010349924.1
COORDINATES: protein motif:HMM:NF012271.2
fibronectin type III domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010349925.1
COORDINATES: protein motif:HMM:NF014581.2
type IV secretory system conjugative DNA transfer family protein
COORDINATES: protein motif:HMM:NF024099.2
COORDINATES: similar to AA sequence:RefSeq:WP_015530047.1
COORDINATES: protein motif:HMM:NF017885.2
COORDINATES: similar to AA sequence:RefSeq:WP_009272549.1
COORDINATES: protein motif:HMM:NF013579.2
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002673445.1
COORDINATES: similar to AA sequence:RefSeq:WP_002691718.1
COORDINATES: similar to AA sequence:RefSeq:WP_002687863.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
type I restriction-modification system subunit M
COORDINATES: similar to AA sequence:RefSeq:WP_002851794.1
type I restriction-modification system endonuclease
COORDINATES: similar to AA sequence:RefSeq:WP_013483752.1
COORDINATES: similar to AA sequence:RefSeq:WP_015529937.1
COORDINATES: similar to AA sequence:RefSeq:WP_013483791.1
COORDINATES: similar to AA sequence:RefSeq:WP_013483790.1
COORDINATES: similar to AA sequence:RefSeq:WP_013483789.1
COORDINATES: similar to AA sequence:RefSeq:WP_019680646.1
COORDINATES: similar to AA sequence:RefSeq:WP_009985624.1
GO:0003896 - DNA primase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002850969.1
COORDINATES: similar to AA sequence:RefSeq:WP_009985628.1
COORDINATES: similar to AA sequence:RefSeq:WP_009985629.1
COORDINATES: similar to AA sequence:RefSeq:WP_009985630.1
COORDINATES: similar to AA sequence:RefSeq:WP_002850955.1
COORDINATES: similar to AA sequence:RefSeq:WP_009985633.1
COORDINATES: similar to AA sequence:RefSeq:WP_018273520.1
COORDINATES: similar to AA sequence:RefSeq:WP_013483496.1
COORDINATES: protein motif:HMM:NF024116.2
COORDINATES: similar to AA sequence:RefSeq:WP_019678417.1
COORDINATES: similar to AA sequence:RefSeq:WP_002848989.1
efflux RND transporter periplasmic adaptor subunit
COORDINATES: protein motif:HMM:NF039403.1
COORDINATES: similar to AA sequence:RefSeq:WP_009986968.1
COORDINATES: similar to AA sequence:RefSeq:WP_019892187.1
GO:0004044 - amidophosphoribosyltransferase activity [Evidence IEA]
GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002850015.1
GO:0005515 - protein binding [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]; GO:0009408 - response to heat [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013483904.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002849994.1
COORDINATES: similar to AA sequence:RefSeq:WP_005356259.1
GO:0009408 - response to heat [Evidence IEA]
heat-inducible transcriptional repressor HrcA
COORDINATES: similar to AA sequence:RefSeq:WP_002849898.1
COORDINATES: similar to AA sequence:RefSeq:WP_002850065.1
GO:0004743 - pyruvate kinase activity [Evidence IEA]
GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002849887.1
COORDINATES: similar to AA sequence:RefSeq:WP_009986043.1
COORDINATES: similar to AA sequence:RefSeq:WP_006907146.1
COORDINATES: similar to AA sequence:RefSeq:WP_009986318.1
COORDINATES: similar to AA sequence:RefSeq:WP_002850077.1
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013483421.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO:0018142 - protein-DNA covalent cross-linking [Evidence IEA]
SOS response-associated peptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_002849744.1
COORDINATES: similar to AA sequence:RefSeq:WP_016296324.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0004834 - tryptophan synthase activity [Evidence IEA]
GO:0000162 - tryptophan biosynthetic process [Evidence IEA]; GO:0006568 - tryptophan metabolic process [Evidence IEA]
TrpB-like pyridoxal phosphate-dependent enzyme
COORDINATES: protein motif:HMM:NF013703.2
GO:0015297 - antiporter activity [Evidence IEA]; GO:0042910 - xenobiotic transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012792.2
COORDINATES: similar to AA sequence:RefSeq:WP_013497273.1
COORDINATES: similar to AA sequence:RefSeq:WP_002849899.1
COORDINATES: protein motif:HMM:NF024637.2
COORDINATES: similar to AA sequence:RefSeq:WP_002849903.1
COORDINATES: similar to AA sequence:RefSeq:WP_013184361.1
COORDINATES: similar to AA sequence:RefSeq:WP_005356693.1
GO:0016149 - translation release factor activity, codon specific [Evidence IEA]
GO:0006415 - translational termination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015557776.1
COORDINATES: similar to AA sequence:RefSeq:WP_002849891.1
GO:0061710 - L-threonylcarbamoyladenylate synthase [Evidence IEA]
GO:0006400 - tRNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002849940.1
GO:0004140 - dephospho-CoA kinase activity [Evidence IEA]
Dephospho-CoA kinase (CoaE) performs the final step in coenzyme A biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002849981.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002849985.1
GO:0004177 - aminopeptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002849968.1
GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]
GO:0030436 - asexual sporulation [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009987051.1
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
RNA polymerase sporulation sigma factor SigE
COORDINATES: similar to AA sequence:RefSeq:WP_002851923.1
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_009985150.1
COORDINATES: similar to AA sequence:RefSeq:WP_019678139.1
COORDINATES: similar to AA sequence:RefSeq:WP_002849979.1
GO:0005575 - cellular_component [Evidence IEA]
GO:0043751 - polyphosphate:AMP phosphotransferase activity [Evidence IEA]
GO:0006797 - polyphosphate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012058584.1
COORDINATES: similar to AA sequence:RefSeq:WP_002850223.1
COORDINATES: similar to AA sequence:RefSeq:WP_002847700.1
COORDINATES: similar to AA sequence:RefSeq:WP_002847684.1
COORDINATES: similar to AA sequence:RefSeq:WP_002847692.1
GO:0051989 - coproporphyrinogen dehydrogenase activity [Evidence IEA]
GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002847678.1
COORDINATES: similar to AA sequence:RefSeq:WP_002847682.1
COORDINATES: similar to AA sequence:RefSeq:WP_013483947.1