Natrinema pallidum strain BOL6-1 plasmid pNPA70, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Natrialbales; Natrialbaceae; Natrinema.
Genome Sequences and Methylation Patterns of Natrinema versiforme BOL5-4 and Natrinema pallidum BOL6-1, Two Extremely Halophilic Archaea from a Bolivian Salt Mine
Microbiol Resour Announc 8 (33), e00810-19 (2019)
Submitted (23-MAY-2019) Microbiology and Immunology, University of Maryland, 701 East Pratt Street, Baltimore, MD 21202, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP040639.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2019\nAssembly Method :: HGAP v. 2019\nAssembly Name :: Natrinema pallidum BOL6-1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 200.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/19/2022 14:22:08\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,838\nCDSs (total) :: 3,775\nGenes (coding) :: 3,703\nCDSs (with protein) :: 3,703\nGenes (RNA) :: 63\nrRNAs :: 4, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 3, 3 (5S, 16S, 23S)\ntRNAs :: 51\nncRNAs :: 2\nPseudo Genes (total) :: 72\nCDSs (without protein) :: 72\nPseudo Genes (ambiguous residues) :: 0 of 72\nPseudo Genes (frameshifted) :: 32 of 72\nPseudo Genes (incomplete) :: 46 of 72\nPseudo Genes (internal stop) :: 14 of 72\nPseudo Genes (multiple problems) :: 19 of 72\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_014864111.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
type IV pilin N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014864112.1
COORDINATES: similar to AA sequence:RefSeq:WP_006182346.1
COORDINATES: similar to AA sequence:RefSeq:WP_005557311.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_008451652.1
COORDINATES: similar to AA sequence:RefSeq:WP_006430207.1
COORDINATES: similar to AA sequence:RefSeq:WP_007139916.1
COORDINATES: protein motif:HMM:NF024753.2
PQQ-binding-like beta-propeller repeat protein
COORDINATES: similar to AA sequence:RefSeq:WP_006430203.1
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006430202.1
COORDINATES: similar to AA sequence:RefSeq:WP_006430196.1
COORDINATES: protein motif:HMM:NF019348.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012321.2
COORDINATES: protein motif:HMM:NF012792.2
COORDINATES: similar to AA sequence:RefSeq:WP_006068076.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012946174.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048220.1
COORDINATES: similar to AA sequence:RefSeq:WP_008451504.1
COORDINATES: similar to AA sequence:RefSeq:WP_008451502.1
COORDINATES: similar to AA sequence:RefSeq:WP_008451498.1
COORDINATES: similar to AA sequence:RefSeq:WP_013876050.1
COORDINATES: similar to AA sequence:RefSeq:WP_008451492.1
COORDINATES: similar to AA sequence:RefSeq:WP_013876048.1
COORDINATES: similar to AA sequence:RefSeq:WP_006430279.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946178.1
COORDINATES: similar to AA sequence:RefSeq:WP_006187076.1
COORDINATES: similar to AA sequence:RefSeq:WP_006824082.1
COORDINATES: similar to AA sequence:RefSeq:WP_006673610.1
COORDINATES: similar to AA sequence:RefSeq:WP_006187070.1
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012946190.1
COORDINATES: similar to AA sequence:RefSeq:WP_013876024.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946194.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946195.1
COORDINATES: similar to AA sequence:RefSeq:WP_006648264.1
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF014101.2
sigma-70 region 4 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007702381.1
COORDINATES: similar to AA sequence:RefSeq:WP_006167228.1
COORDINATES: similar to AA sequence:RefSeq:WP_006429238.1
COORDINATES: similar to AA sequence:RefSeq:WP_006187053.1
COORDINATES: similar to AA sequence:RefSeq:WP_006430235.1
COORDINATES: similar to AA sequence:RefSeq:WP_006187049.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946220.1
COORDINATES: similar to AA sequence:RefSeq:WP_006430223.1
winged helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF012704.2
COORDINATES: similar to AA sequence:RefSeq:WP_006430219.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183756.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488157.1
COORDINATES: protein motif:HMM:NF024589.2
COORDINATES: similar to AA sequence:RefSeq:WP_005559536.1