Natrinema pallidum strain BOL6-1 plasmid pNPA200, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Natrialbales; Natrialbaceae; Natrinema.
Genome Sequences and Methylation Patterns of Natrinema versiforme BOL5-4 and Natrinema pallidum BOL6-1, Two Extremely Halophilic Archaea from a Bolivian Salt Mine
Microbiol Resour Announc 8 (33), e00810-19 (2019)
Submitted (23-MAY-2019) Microbiology and Immunology, University of Maryland, 701 East Pratt Street, Baltimore, MD 21202, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP040638.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2019\nAssembly Method :: HGAP v. 2019\nAssembly Name :: Natrinema pallidum BOL6-1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 200.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/19/2022 14:22:08\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,838\nCDSs (total) :: 3,775\nGenes (coding) :: 3,703\nCDSs (with protein) :: 3,703\nGenes (RNA) :: 63\nrRNAs :: 4, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 3, 3 (5S, 16S, 23S)\ntRNAs :: 51\nncRNAs :: 2\nPseudo Genes (total) :: 72\nCDSs (without protein) :: 72\nPseudo Genes (ambiguous residues) :: 0 of 72\nPseudo Genes (frameshifted) :: 32 of 72\nPseudo Genes (incomplete) :: 46 of 72\nPseudo Genes (internal stop) :: 14 of 72\nPseudo Genes (multiple problems) :: 19 of 72\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_008454177.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008454176.1
COORDINATES: similar to AA sequence:RefSeq:WP_006648170.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008454172.1
COORDINATES: similar to AA sequence:RefSeq:WP_006648168.1
GO:0004053 - arginase activity [Evidence IEA]
GO:0019547 - arginine catabolic process to ornithine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008454169.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]
aminotransferase class III-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_008454167.1
GO:0015385 - sodium:proton antiporter activity [Evidence IEA]
GO:1902600 - proton transmembrane transport [Evidence IEA]; GO:0006814 - sodium ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008454165.1
COORDINATES: similar to AA sequence:RefSeq:WP_006187364.1
GO:0016639 - oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006182211.1
COORDINATES: similar to AA sequence:RefSeq:WP_004215105.1
GO:0009263 - deoxyribonucleotide biosynthetic process [Evidence IEA]
ribonucleotide-diphosphate reductase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_007260930.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
ribonucleoside-diphosphate reductase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_012807516.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015301901.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_008893440.1
COORDINATES: similar to AA sequence:RefSeq:WP_006187358.1
COORDINATES: similar to AA sequence:RefSeq:WP_007107513.1
COORDINATES: protein motif:HMM:NF019310.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF024740.2
COORDINATES: similar to AA sequence:RefSeq:WP_007107507.1
COORDINATES: similar to AA sequence:RefSeq:WP_007107505.1
COORDINATES: similar to AA sequence:RefSeq:WP_013440733.1
COORDINATES: similar to AA sequence:RefSeq:WP_006828030.1
GO:0016301 - kinase activity [Evidence IEA]
type II toxin-antitoxin system death-on-curing family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_004060441.1
COORDINATES: similar to AA sequence:RefSeq:WP_015408486.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015233736.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008896494.1
polysaccharide pyruvyl transferase family protein
COORDINATES: protein motif:HMM:NF024832.2
COORDINATES: similar to AA sequence:RefSeq:WP_014865491.1
GO:0003824 - catalytic activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006432822.1
COORDINATES: similar to AA sequence:RefSeq:WP_006433319.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006180969.1
COORDINATES: similar to AA sequence:RefSeq:WP_006650909.1
COORDINATES: similar to AA sequence:RefSeq:WP_008457464.1
COORDINATES: similar to AA sequence:RefSeq:WP_014865518.1
COORDINATES: similar to AA sequence:RefSeq:WP_006180968.1
COORDINATES: similar to AA sequence:RefSeq:WP_006180967.1
COORDINATES: similar to AA sequence:RefSeq:WP_006180966.1
COORDINATES: similar to AA sequence:RefSeq:WP_006433311.1
COORDINATES: similar to AA sequence:RefSeq:WP_006182486.1
COORDINATES: similar to AA sequence:RefSeq:WP_015310271.1
COORDINATES: similar to AA sequence:RefSeq:WP_006187346.1
COORDINATES: similar to AA sequence:RefSeq:WP_014865512.1
COORDINATES: similar to AA sequence:RefSeq:WP_006433301.1
COORDINATES: similar to AA sequence:RefSeq:WP_015298972.1
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007107549.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053133.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007107559.1
COORDINATES: similar to AA sequence:RefSeq:WP_008453934.1
COORDINATES: similar to AA sequence:RefSeq:WP_006187313.1
GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006187314.1
COORDINATES: similar to AA sequence:RefSeq:WP_014863928.1
rhodanese-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006187316.1
COORDINATES: similar to AA sequence:RefSeq:WP_006187317.1
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004267663.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006187319.1
COORDINATES: similar to AA sequence:RefSeq:WP_006187320.1
COORDINATES: similar to AA sequence:RefSeq:WP_006187322.1
COORDINATES: similar to AA sequence:RefSeq:WP_006187323.1
COORDINATES: similar to AA sequence:RefSeq:WP_006187324.1
COORDINATES: similar to AA sequence:RefSeq:WP_006187325.1
COORDINATES: similar to AA sequence:RefSeq:WP_006187326.1
COORDINATES: similar to AA sequence:RefSeq:WP_008892537.1
GO:0005384 - manganese ion transmembrane transporter activity [Evidence IEA]
GO:0030026 - cellular manganese ion homeostasis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008453971.1
COORDINATES: similar to AA sequence:RefSeq:WP_007107578.1
COORDINATES: similar to AA sequence:RefSeq:WP_007107580.1
GO:0005388 - P-type calcium transporter activity [Evidence IEA]
GO:0006816 - calcium ion transport [Evidence IEA]
calcium-translocating P-type ATPase, PMCA-type
COORDINATES: similar to AA sequence:RefSeq:WP_014863947.1
COORDINATES: similar to AA sequence:RefSeq:WP_007107582.1
COORDINATES: similar to AA sequence:RefSeq:WP_014863949.1
GO:0015299 - solute:proton antiporter activity [Evidence IEA]
GO:0006812 - cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007107584.1
COORDINATES: similar to AA sequence:RefSeq:WP_008453992.1
COORDINATES: similar to AA sequence:RefSeq:WP_006087857.1
COORDINATES: similar to AA sequence:RefSeq:WP_014863956.1
COORDINATES: similar to AA sequence:RefSeq:WP_006187338.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111127.1
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006187340.1
COORDINATES: similar to AA sequence:RefSeq:WP_015298873.1
COORDINATES: similar to AA sequence:RefSeq:WP_008094346.1
COORDINATES: similar to AA sequence:RefSeq:WP_004968434.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060789.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004971387.1
SWIM zinc finger domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004043411.1
COORDINATES: similar to AA sequence:RefSeq:WP_014865851.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048595.1
COORDINATES: similar to AA sequence:RefSeq:WP_008443788.1
COORDINATES: similar to AA sequence:RefSeq:WP_004043407.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004590717.1
COORDINATES: similar to AA sequence:RefSeq:WP_007107593.1
COORDINATES: similar to AA sequence:RefSeq:WP_014863969.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945356.1
GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012945357.1
COORDINATES: similar to AA sequence:RefSeq:WP_006187462.1
COORDINATES: similar to AA sequence:RefSeq:WP_008892502.1
COORDINATES: similar to AA sequence:RefSeq:WP_006179428.1
COORDINATES: similar to AA sequence:RefSeq:WP_015298860.1
COORDINATES: similar to AA sequence:RefSeq:WP_006187458.1
COORDINATES: similar to AA sequence:RefSeq:WP_006179434.1
nitrous oxide reductase accessory protein NosL
COORDINATES: similar to AA sequence:RefSeq:WP_006187456.1
COORDINATES: similar to AA sequence:RefSeq:WP_006187455.1
COORDINATES: similar to AA sequence:RefSeq:WP_007107418.1
COORDINATES: similar to AA sequence:RefSeq:WP_008454034.1
COORDINATES: similar to AA sequence:RefSeq:WP_006187451.1
GO:0016682 - oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor [Evidence IEA]
cytochrome d ubiquinol oxidase subunit II
COORDINATES: similar to AA sequence:RefSeq:WP_007107421.1
COORDINATES: similar to AA sequence:RefSeq:WP_014863978.1
COORDINATES: similar to AA sequence:RefSeq:WP_006187448.1
COORDINATES: similar to AA sequence:RefSeq:WP_006628333.1
COORDINATES: similar to AA sequence:RefSeq:WP_006187446.1
COORDINATES: similar to AA sequence:RefSeq:WP_008454047.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945379.1
COORDINATES: similar to AA sequence:RefSeq:WP_007107428.1
COORDINATES: similar to AA sequence:RefSeq:WP_006187442.1
COORDINATES: similar to AA sequence:RefSeq:WP_006187441.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_006187440.1
COORDINATES: similar to AA sequence:RefSeq:WP_014863987.1
COORDINATES: similar to AA sequence:RefSeq:WP_008454063.1
COORDINATES: similar to AA sequence:RefSeq:WP_008454064.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008454066.1
COORDINATES: similar to AA sequence:RefSeq:WP_006179543.1
COORDINATES: similar to AA sequence:RefSeq:WP_008454069.1
COORDINATES: similar to AA sequence:RefSeq:WP_014863993.1
COORDINATES: similar to AA sequence:RefSeq:WP_007107443.1
COORDINATES: similar to AA sequence:RefSeq:WP_007188588.1
COORDINATES: similar to AA sequence:RefSeq:WP_005538772.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594282.1
COORDINATES: similar to AA sequence:RefSeq:WP_006181112.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
acetyl-CoA carboxylase biotin carboxylase subunit
COORDINATES: similar to AA sequence:RefSeq:WP_008454081.1
COORDINATES: similar to AA sequence:RefSeq:WP_006055989.1
COORDINATES: similar to AA sequence:RefSeq:WP_006187412.1
GO:0016831 - carboxy-lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014864002.1
COORDINATES: similar to AA sequence:RefSeq:WP_007107452.1
COORDINATES: similar to AA sequence:RefSeq:WP_008454090.1
COORDINATES: similar to AA sequence:RefSeq:WP_008454092.1
enoyl-CoA hydratase/isomerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014864005.1
acyl CoA:acetate/3-ketoacid CoA transferase
COORDINATES: similar to AA sequence:RefSeq:WP_007107456.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006187404.1
GO:0070403 - NAD+ binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007107458.1
COORDINATES: similar to AA sequence:RefSeq:WP_005578658.1
COORDINATES: similar to AA sequence:RefSeq:WP_007107461.1
COORDINATES: similar to AA sequence:RefSeq:WP_007107462.1
COORDINATES: similar to AA sequence:RefSeq:WP_006187400.1
COORDINATES: similar to AA sequence:RefSeq:WP_008454120.1
COORDINATES: similar to AA sequence:RefSeq:WP_006600954.1
GO:0097266 - phenylacetyl-CoA 1,2-epoxidase activity [Evidence IEA]
GO:0010124 - phenylacetate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007107466.1
1,2-phenylacetyl-CoA epoxidase subunit PaaB
COORDINATES: similar to AA sequence:RefSeq:WP_007107467.1
1,2-phenylacetyl-CoA epoxidase subunit PaaC
COORDINATES: similar to AA sequence:RefSeq:WP_007107468.1
1,2-phenylacetyl-CoA epoxidase subunit PaaD
COORDINATES: similar to AA sequence:RefSeq:WP_008454129.1
1,2-phenylacetyl-CoA epoxidase subunit PaaE
COORDINATES: similar to AA sequence:RefSeq:WP_012944034.1
MaoC/PaaZ C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014864024.1
COORDINATES: similar to AA sequence:RefSeq:WP_006187391.1
phage integrase SAM-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008606609.1
COORDINATES: similar to AA sequence:RefSeq:WP_012807507.1
COORDINATES: similar to AA sequence:RefSeq:WP_012807508.1
COORDINATES: similar to AA sequence:RefSeq:WP_006187387.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0015446 - ATPase-coupled arsenite transmembrane transporter activity [Evidence IEA]
GO:0071722 - detoxification of arsenic-containing substance [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012807510.1
arsenite efflux transporter metallochaperone ArsD
COORDINATES: similar to AA sequence:RefSeq:WP_007993265.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_006114206.1
low molecular weight phosphatase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008444906.1
COORDINATES: similar to AA sequence:RefSeq:WP_008441239.1
COORDINATES: protein motif:HMM:NF012744.2
COORDINATES: similar to AA sequence:RefSeq:WP_013875670.1
COORDINATES: similar to AA sequence:RefSeq:WP_013875671.1
COORDINATES: similar to AA sequence:RefSeq:WP_013875672.1
COORDINATES: similar to AA sequence:RefSeq:WP_014865501.1
COORDINATES: similar to AA sequence:RefSeq:WP_015322744.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011572270.1
COORDINATES: similar to AA sequence:RefSeq:WP_015320926.1
COORDINATES: similar to AA sequence:RefSeq:WP_014865506.1
COORDINATES: similar to AA sequence:RefSeq:WP_007107536.1
COORDINATES: similar to AA sequence:RefSeq:WP_007107535.1
COORDINATES: similar to AA sequence:RefSeq:WP_006187379.1
COORDINATES: similar to AA sequence:RefSeq:WP_007107532.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_014052718.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015409529.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008454196.1
COORDINATES: similar to AA sequence:RefSeq:WP_008454191.1
COORDINATES: similar to AA sequence:RefSeq:WP_006182819.1
COORDINATES: similar to AA sequence:RefSeq:WP_008454186.1
COORDINATES: similar to AA sequence:RefSeq:WP_006187372.1
COORDINATES: similar to AA sequence:RefSeq:WP_006187371.1