Natronococcus occultus SP4 plasmid 2, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Natrialbales; Natrialbaceae; Natronococcus.
FINISHED of Natronococcus occultus SP4, DSM 3396
Submitted (08-NOV-2012) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP003931.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 97967\nSource DNA and organism available from Hans-Peter Klenk at the\nGerman Collection of Microorganisms and Cell Cultures (DSMZ)\n(hans-peter.klenk@dsmz.de)\nContacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)\n David Bruce (microbe@cuba.jgi-psf.org)\nWhole genome sequencing and draft assembly at JGI-PGF\nAnnotation by JGI-PGF and JGI-ORNL\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##MIGS-Data-START##\ninvestigation_type :: bacteria_archaea\nproject_name :: Natronococcus occultus SP4, DSM 3396\ncollection_date :: Missing\nlat_lon :: -1.944 36.252\ndepth :: Missing\nalt_elev :: Missing\ncountry :: Kenya\nenvironment :: Fresh water, Aquatic\nnum_replicons :: Missing\nref_biomaterial :: DSM 3396, ATCC 43101, CCM 3871, NCMB\n 2192\nbiotic_relationship :: Free living\ntrophic_level :: Heterotroph\nrel_to_oxygen :: Aerobe\nisol_growth_condt :: Missing\nsequencing_meth :: WGS\nassembly :: Newbler v. 2.3 (pre-release)\nfinishing_strategy :: Missing\nGOLD Stamp ID :: Gi02931\nCurrent Finishing Status :: Level 6: Finished\nType Strain :: Yes\nGreengenes ID :: 674\nFunding Program :: DOE-GEBA 2007\nGene Calling Method :: Prodigal 1.4, GenePRIMP\nIsolation Site :: Soda lake Lake Magadi\nCell Shape :: Coccus-shaped\nMotility :: Nonmotile\nTemperature Range :: Mesophile\nTemperature Optimum :: 37C\nSalinity :: Halophile\npH :: 9.5\nGram Staining :: Gram-\nPhenotypes :: Alkaliphile\n##MIGS-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/03/2023 01:22:13\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,365\nCDSs (total) :: 4,296\nGenes (coding) :: 4,203\nCDSs (with protein) :: 4,203\nGenes (RNA) :: 69\nrRNAs :: 5, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 4, 4 (5S, 16S, 23S)\ntRNAs :: 54\nncRNAs :: 2\nPseudo Genes (total) :: 93\nCDSs (without protein) :: 93\nPseudo Genes (ambiguous residues) :: 0 of 93\nPseudo Genes (frameshifted) :: 53 of 93\nPseudo Genes (incomplete) :: 56 of 93\nPseudo Genes (internal stop) :: 21 of 93\nPseudo Genes (multiple problems) :: 34 of 93\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_008423300.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008423302.1
COORDINATES: similar to AA sequence:RefSeq:WP_004517476.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_008422051.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611805.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008165015.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611400.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008422048.1
COORDINATES: protein motif:HMM:NF016362.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008423320.1
COORDINATES: similar to AA sequence:RefSeq:WP_004516850.1
COORDINATES: similar to AA sequence:RefSeq:WP_005559841.1
COORDINATES: similar to AA sequence:RefSeq:WP_005557781.1
COORDINATES: similar to AA sequence:RefSeq:WP_005559837.1
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015788591.1
COORDINATES: similar to AA sequence:RefSeq:WP_007981521.1
COORDINATES: similar to AA sequence:RefSeq:WP_007257753.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013440732.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004216199.1
COORDINATES: similar to AA sequence:RefSeq:WP_005557581.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]
GO:0016310 - phosphorylation [Evidence IEA]
PEP/pyruvate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007979465.1
COORDINATES: similar to AA sequence:RefSeq:WP_009377255.1
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO:0071586 - CAAX-box protein processing [Evidence IEA]
CPBP family intramembrane metalloprotease
COORDINATES: similar to AA sequence:RefSeq:WP_004595550.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008422716.1
COORDINATES: similar to AA sequence:RefSeq:WP_008422715.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008390423.1
COORDINATES: similar to AA sequence:RefSeq:WP_005556938.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_008415486.1
COORDINATES: similar to AA sequence:RefSeq:WP_008422358.1
COORDINATES: similar to AA sequence:RefSeq:WP_008585275.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890462.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008015107.1
COORDINATES: similar to AA sequence:RefSeq:WP_006666971.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008312803.1
winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015323262.1
COORDINATES: similar to AA sequence:RefSeq:WP_008421761.1
COORDINATES: similar to AA sequence:RefSeq:WP_015323265.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945107.1
COORDINATES: similar to AA sequence:RefSeq:WP_008422548.1
COORDINATES: similar to AA sequence:RefSeq:WP_007736463.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006181118.1
COORDINATES: similar to AA sequence:RefSeq:WP_005041729.1
COORDINATES: protein motif:HMM:NF013584.2
COORDINATES: similar to AA sequence:RefSeq:WP_015320477.1
COORDINATES: similar to AA sequence:RefSeq:WP_008419405.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008419407.1
GO:0012506 - vesicle membrane [Evidence IEA]
GO:0005198 - structural molecule activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008419409.1
COORDINATES: protein motif:HMM:NF016977.2
GO:0031412 - gas vesicle organization [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008419414.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825248.1
COORDINATES: similar to AA sequence:RefSeq:WP_006167431.1
COORDINATES: similar to AA sequence:RefSeq:WP_007109939.1
COORDINATES: similar to AA sequence:RefSeq:WP_007141618.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005557596.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
2Fe-2S iron-sulfur cluster-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_005555130.1
GO:0008430 - selenium binding [Evidence IEA]
selenium-binding protein SBP56-related protein
COORDINATES: similar to AA sequence:RefSeq:WP_005039890.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0004076 - biotin synthase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
GO:0009102 - biotin biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006653219.1
COORDINATES: similar to AA sequence:RefSeq:WP_011323823.1
GO:0008710 - 8-amino-7-oxononanoate synthase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006166387.1
GO:0004141 - dethiobiotin synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013777.2
COORDINATES: protein motif:HMM:NF016724.2
COORDINATES: similar to AA sequence:RefSeq:WP_008895921.1
COORDINATES: similar to AA sequence:RefSeq:WP_006109158.1
rubrerythrin-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008423096.1
COORDINATES: similar to AA sequence:RefSeq:WP_005557286.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005557288.1
COORDINATES: similar to AA sequence:RefSeq:WP_005557289.1
COORDINATES: protein motif:HMM:NF014471.2
GO:0015109 - chromate transmembrane transporter activity [Evidence IEA]
GO:0015703 - chromate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005557293.1
COORDINATES: similar to AA sequence:RefSeq:WP_005557295.1
nitrous oxide reductase accessory protein NosL
COORDINATES: similar to AA sequence:RefSeq:WP_005557297.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006653084.1
COORDINATES: similar to AA sequence:RefSeq:WP_006653083.1
GO:0071941 - nitrogen cycle metabolic process [Evidence IEA]
nitrous oxide reductase family maturation protein NosD
COORDINATES: similar to AA sequence:RefSeq:WP_005557302.1
COORDINATES: similar to AA sequence:RefSeq:WP_006653081.1
GO:0050304 - nitrous-oxide reductase activity [Evidence IEA]
GO:0019333 - denitrification pathway [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012944169.1
Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain
COORDINATES: similar to AA sequence:RefSeq:WP_012944170.1
rhodanese-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005557309.1
COORDINATES: similar to AA sequence:RefSeq:WP_008422931.1
COORDINATES: similar to AA sequence:RefSeq:WP_006650500.1
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005557316.1
COORDINATES: similar to AA sequence:RefSeq:WP_005040834.1
GO:0003824 - catalytic activity [Evidence IEA]
GO:0008150 - biological_process [Evidence IEA]
secondary thiamine-phosphate synthase enzyme YjbQ
COORDINATES: similar to AA sequence:RefSeq:WP_006671823.1
COORDINATES: similar to AA sequence:RefSeq:WP_005557323.1
COORDINATES: similar to AA sequence:RefSeq:WP_005557325.1
COORDINATES: similar to AA sequence:RefSeq:WP_005576486.1
COORDINATES: similar to AA sequence:RefSeq:WP_005557553.1
COORDINATES: similar to AA sequence:RefSeq:WP_006066788.1
COORDINATES: similar to AA sequence:RefSeq:WP_004214298.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005557564.1
COORDINATES: protein motif:HMM:NF015436.2
transporter associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006187320.1
GO:0032559 - adenyl ribonucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006187319.1
COORDINATES: similar to AA sequence:RefSeq:WP_004266999.1
COORDINATES: similar to AA sequence:RefSeq:WP_006066815.1
COORDINATES: similar to AA sequence:RefSeq:WP_004214312.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006430733.1
GO:0006813 - potassium ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006088415.1
COORDINATES: similar to AA sequence:RefSeq:WP_006088413.1
COORDINATES: similar to AA sequence:RefSeq:WP_005557331.1
COORDINATES: similar to AA sequence:RefSeq:WP_005557332.1
COORDINATES: similar to AA sequence:RefSeq:WP_005557333.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006649790.1
COORDINATES: similar to AA sequence:RefSeq:WP_005557335.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667214.1
COORDINATES: similar to AA sequence:RefSeq:WP_008422910.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
GO:0009060 - aerobic respiration [Evidence IEA]
cbb3-type cytochrome c oxidase subunit I
COORDINATES: similar to AA sequence:RefSeq:WP_006652832.1
GO:0005506 - iron ion binding [Evidence IEA]
GO:0030091 - protein repair [Evidence IEA]
iron-sulfur cluster repair di-iron protein
COORDINATES: similar to AA sequence:RefSeq:WP_006652848.1
COORDINATES: similar to AA sequence:RefSeq:WP_005557018.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0015416 - ABC-type phosphonate transporter activity [Evidence IEA]
GO:0015716 - organic phosphonate transport [Evidence IEA]
phosphonate ABC transporter, permease protein PhnE
COORDINATES: protein motif:HMM:NF012235.2
ATP-binding cassette domain-containing protein
COORDINATES: protein motif:HMM:NF024376.2
PhnD/SsuA/transferrin family substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_005579984.1
metal-dependent transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_005557344.1
COORDINATES: similar to AA sequence:RefSeq:WP_004213461.1
GO:0052717 - tRNA-specific adenosine-34 deaminase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015323342.1
COORDINATES: similar to AA sequence:RefSeq:WP_005557348.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_005557349.1
COORDINATES: similar to AA sequence:RefSeq:WP_015319604.1
COORDINATES: similar to AA sequence:RefSeq:WP_008422903.1
COORDINATES: similar to AA sequence:RefSeq:WP_014863192.1
COORDINATES: similar to AA sequence:RefSeq:WP_015323348.1
COORDINATES: similar to AA sequence:RefSeq:WP_008422898.1
COORDINATES: similar to AA sequence:RefSeq:WP_015322316.1
COORDINATES: similar to AA sequence:RefSeq:WP_011571289.1
COORDINATES: similar to AA sequence:RefSeq:WP_008422893.1
COORDINATES: similar to AA sequence:RefSeq:WP_008422891.1
COORDINATES: similar to AA sequence:RefSeq:WP_008422888.1
COORDINATES: similar to AA sequence:RefSeq:WP_011323643.1
COORDINATES: similar to AA sequence:RefSeq:WP_011323642.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015323357.1
methionine synthase II (cobalamin-independent)
COORDINATES: similar to AA sequence:RefSeq:WP_006186911.1
COORDINATES: similar to AA sequence:RefSeq:WP_006824337.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053133.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015233284.1
GO:0004181 - metallocarboxypeptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007258900.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091324.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945280.1
COORDINATES: similar to AA sequence:RefSeq:WP_006056781.1
carbon-nitrogen hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007693527.1
COORDINATES: similar to AA sequence:RefSeq:WP_006092960.1
COORDINATES: similar to AA sequence:RefSeq:WP_008007868.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825319.1
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: protein motif:HMM:NF012707.2
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004216155.1
GO:0030420 - establishment of competence for transformation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005555390.1
GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO:0004022 - alcohol dehydrogenase (NAD+) activity [Evidence IEA]; GO:0047988 - hydroxyacid-oxoacid transhydrogenase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0006629 - lipid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006091812.1
N-acyl homoserine lactonase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005557353.1
COORDINATES: similar to AA sequence:RefSeq:WP_005557352.1
COORDINATES: similar to AA sequence:RefSeq:WP_013880888.1
COORDINATES: similar to AA sequence:RefSeq:WP_006654648.1
PQQ-binding-like beta-propeller repeat protein
COORDINATES: similar to AA sequence:RefSeq:WP_006429754.1
COORDINATES: similar to AA sequence:RefSeq:WP_007108249.1
GO:0016829 - lyase activity [Evidence IEA]
CbiX/SirB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013880439.1
COORDINATES: similar to AA sequence:RefSeq:WP_008892609.1
COORDINATES: similar to AA sequence:RefSeq:WP_006654653.1
GO:0030789 - precorrin-3B C17-methyltransferase activity [Evidence IEA]
GO:0009236 - cobalamin biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006186523.1
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012942198.1
COORDINATES: similar to AA sequence:RefSeq:WP_008162988.1
COORDINATES: similar to AA sequence:RefSeq:WP_008422978.1
cobalt-factor II C(20)-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_008422980.1
GO:0046025 - precorrin-6Y C5,15-methyltransferase (decarboxylating) activity [Evidence IEA]
GO:0046140 - corrin biosynthetic process [Evidence IEA]
precorrin-6Y C5,15-methyltransferase (decarboxylating) subunit CbiT
COORDINATES: similar to AA sequence:RefSeq:WP_008009998.1
cobalt-precorrin-7 (C(5))-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_006089305.1
COORDINATES: similar to AA sequence:RefSeq:WP_006181902.1
COORDINATES: similar to AA sequence:RefSeq:WP_006181903.1
COORDINATES: similar to AA sequence:RefSeq:WP_004215083.1
COORDINATES: similar to AA sequence:RefSeq:WP_005557385.1
COORDINATES: similar to AA sequence:RefSeq:WP_005557377.1
GO:0004519 - endonuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008387074.1
GO:0008233 - peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012945155.1
COORDINATES: similar to AA sequence:RefSeq:WP_008002342.1
COORDINATES: similar to AA sequence:RefSeq:WP_006067095.1
ribonuclease H-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006067096.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006092144.1
GO:0045550 - geranylgeranyl reductase activity [Evidence IEA]
GO:0030494 - bacteriochlorophyll biosynthetic process [Evidence IEA]; GO:0015995 - chlorophyll biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008423075.1
COORDINATES: similar to AA sequence:RefSeq:WP_012943287.1
COORDINATES: similar to AA sequence:RefSeq:WP_005553446.1
COORDINATES: similar to AA sequence:RefSeq:WP_004965819.1
COORDINATES: similar to AA sequence:RefSeq:WP_008423070.1
COORDINATES: similar to AA sequence:RefSeq:WP_015762967.1
COORDINATES: similar to AA sequence:RefSeq:WP_008423068.1
COORDINATES: similar to AA sequence:RefSeq:WP_008423066.1
COORDINATES: similar to AA sequence:RefSeq:WP_008423065.1
COORDINATES: similar to AA sequence:RefSeq:WP_014864922.1
COORDINATES: similar to AA sequence:RefSeq:WP_008423061.1
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005557408.1
COORDINATES: protein motif:HMM:NF025006.2
carboxypeptidase-like regulatory domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005557417.1
COORDINATES: similar to AA sequence:RefSeq:WP_005557420.1
COORDINATES: similar to AA sequence:RefSeq:WP_008423049.1
COORDINATES: similar to AA sequence:RefSeq:WP_008423047.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006667094.1
CaiB/BaiF CoA-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015323418.1
thiamine pyrophosphate-requiring protein
COORDINATES: similar to AA sequence:RefSeq:WP_005557429.1
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006824135.1
enoyl-CoA hydratase/isomerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008423027.1
COORDINATES: similar to AA sequence:RefSeq:WP_008423025.1
tripartite tricarboxylate transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008423024.1
tripartite tricarboxylate transporter TctB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005557435.1
tripartite tricarboxylate transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_008423021.1
COORDINATES: similar to AA sequence:RefSeq:WP_011224163.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]
FAD-binding and (Fe-S)-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006106720.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945717.1
GO:0004474 - malate synthase activity [Evidence IEA]
GO:0006097 - glyoxylate cycle [Evidence IEA]; GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008423016.1
COORDINATES: similar to AA sequence:RefSeq:WP_006824144.1
GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]
isocitrate/isopropylmalate family dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_008423013.1
COORDINATES: similar to AA sequence:RefSeq:WP_015323433.1
GO:0019752 - carboxylic acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005557449.1
GO:0004471 - malate dehydrogenase (decarboxylating) (NAD+) activity [Evidence IEA]; GO:0004470 - malic enzyme activity [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006667078.1
COORDINATES: similar to AA sequence:RefSeq:WP_008423008.1
COORDINATES: similar to AA sequence:RefSeq:WP_006824148.1
COORDINATES: similar to AA sequence:RefSeq:WP_005557456.1
histidine kinase N-terminal 7TM domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005557458.1
bacterio-opsin activator domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005557459.1
COORDINATES: similar to AA sequence:RefSeq:WP_005557461.1
COORDINATES: similar to AA sequence:RefSeq:WP_007258522.1
COORDINATES: similar to AA sequence:RefSeq:WP_006671633.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO:1905887 - autoinducer AI-2 transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005557467.1
COORDINATES: similar to AA sequence:RefSeq:WP_008423001.1
COORDINATES: similar to AA sequence:RefSeq:WP_008423000.1
GO:0005515 - protein binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005557479.1
COORDINATES: similar to AA sequence:RefSeq:WP_008426914.1
COORDINATES: similar to AA sequence:RefSeq:WP_008426912.1
GO:0004794 - L-threonine ammonia-lyase activity [Evidence IEA]
GO:0006549 - isoleucine metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012945209.1
GO:0004047 - aminomethyltransferase activity [Evidence IEA]
GO:0019464 - glycine decarboxylation via glycine cleavage system [Evidence IEA]
glycine cleavage system aminomethyltransferase GcvT
COORDINATES: similar to AA sequence:RefSeq:WP_008426908.1
COORDINATES: similar to AA sequence:RefSeq:WP_008426906.1
GO:0004375 - glycine dehydrogenase (decarboxylating) activity [Evidence IEA]
GO:0006546 - glycine catabolic process [Evidence IEA]
aminomethyl-transferring glycine dehydrogenase subunit GcvPA
COORDINATES: similar to AA sequence:RefSeq:WP_006168109.1
aminomethyl-transferring glycine dehydrogenase subunit GcvPB
COORDINATES: similar to AA sequence:RefSeq:WP_007691264.1
GO:0004148 - dihydrolipoyl dehydrogenase activity [Evidence IEA]
GO:0045454 - cell redox homeostasis [Evidence IEA]; GO:0051068 - dihydrolipoamide metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008426915.1
COORDINATES: similar to AA sequence:RefSeq:WP_008387606.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945221.1
GO:0004180 - carboxypeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007140351.1
catalyzes the reversible formation of fructose 1,6-bisphosphate from glycerone phosphate and D-glyceraldehyde 3-phosphate; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006649167.1
COORDINATES: similar to AA sequence:RefSeq:WP_008416178.1
COORDINATES: protein motif:HMM:NF024910.2
COORDINATES: similar to AA sequence:RefSeq:WP_014051756.1
COORDINATES: similar to AA sequence:RefSeq:WP_009486855.1
COORDINATES: similar to AA sequence:RefSeq:WP_006648170.1
COORDINATES: similar to AA sequence:RefSeq:WP_006824950.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]
aminotransferase class III-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_006187364.1
GO:0016639 - oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006182211.1
COORDINATES: similar to AA sequence:RefSeq:WP_005579631.1
COORDINATES: similar to AA sequence:RefSeq:WP_008423299.1
COORDINATES: similar to AA sequence:RefSeq:WP_006067358.1