Natronococcus occultus SP4 plasmid 1, complete sequence.
type: Entry
definition: Natronococcus occultus SP4 plasmid 1, complete sequence.
sequence version: NC_019975.1
sequence date: 2023-05-03
sequence: sequence
division: CON
label: NC_019975.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02261263
keyword: GSC:MIGS:2.1
keyword: RefSeq
source: Natronococcus occultus SP4
organism: Natronococcus occultus SP4
taxonomy: Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Natrialbales; Natrialbaceae; Natronococcus.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP003930.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 97967\nSource DNA and organism available from Hans-Peter Klenk at the\nGerman Collection of Microorganisms and Cell Cultures (DSMZ)\n(hans-peter.klenk@dsmz.de)\nContacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)\n David Bruce (microbe@cuba.jgi-psf.org)\nWhole genome sequencing and draft assembly at JGI-PGF\nAnnotation by JGI-PGF and JGI-ORNL\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##MIGS-Data-START##\ninvestigation_type :: bacteria_archaea\nproject_name :: Natronococcus occultus SP4, DSM 3396\ncollection_date :: Missing\nlat_lon :: -1.944 36.252\ndepth :: Missing\nalt_elev :: Missing\ncountry :: Kenya\nenvironment :: Fresh water, Aquatic\nnum_replicons :: Missing\nref_biomaterial :: DSM 3396, ATCC 43101, CCM 3871, NCMB\n 2192\nbiotic_relationship :: Free living\ntrophic_level :: Heterotroph\nrel_to_oxygen :: Aerobe\nisol_growth_condt :: Missing\nsequencing_meth :: WGS\nassembly :: Newbler v. 2.3 (pre-release)\nfinishing_strategy :: Missing\nGOLD Stamp ID :: Gi02931\nCurrent Finishing Status :: Level 6: Finished\nType Strain :: Yes\nGreengenes ID :: 674\nFunding Program :: DOE-GEBA 2007\nGene Calling Method :: Prodigal 1.4, GenePRIMP\nIsolation Site :: Soda lake Lake Magadi\nCell Shape :: Coccus-shaped\nMotility :: Nonmotile\nTemperature Range :: Mesophile\nTemperature Optimum :: 37C\nSalinity :: Halophile\npH…

sequence
subclass of: SO_0000155
sequence length: 12939
topology: circular
so has quality: SO_0000988
location: 1..12939
location: region:1-12939:1
RO_0002162: 694430

NC_019975
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02261263
type: BioSample
SIO_000068: biosample

1
title: FINISHED of Natronococcus occultus SP4, DSM 3396
author: Eisen, J.
author: Huntemann, M.
author: Wei, C.-L.
author: Han, J.
author: Detter, J.C.
author: Han, C.
author: Tapia, R.
author: Chen, A.
author: Kyrpides, N.
author: Mavromatis, K.
author: Markowitz, V.
author: Szeto, E.
author: Ivanova, N.
author: Mikhailova, N.
author: Ovchinnikova, G.
author: Pagani, I.
author: Pati, A.
author: Goodwin, L.
author: Nordberg, H.P.
author: Cantor, M.N.
author: Hua, S.X.
author: Woyke, T.
author: Klenk, H.-P.
journal: Unpublished

2
title: Direct Submission
author: Eisen, J.
author: Huntemann, M.
author: Wei, C.-L.
author: Han, J.
author: Detter, J.C.
author: Han, C.
author: Tapia, R.
author: Chen, A.
author: Kyrpides, N.
author: Mavromatis, K.
author: Markowitz, V.
author: Szeto, E.
author: Ivanova, N.
author: Mikhailova, N.
author: Ovchinnikova, G.
author: Pagani, I.
author: Pati, A.
author: Goodwin, L.
author: Nordberg, H.P.
author: Cantor, M.N.
author: Hua, S.X.
author: Woyke, T.
author: Klenk, H.-P.
journal: Submitted (08-NOV-2012) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12939:1
position: 12939
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-12939:1:source
so part of: sequence
organism: Natronococcus occultus SP4
mol type: genomic DNA
strain: SP4
isolation source: Soda lake Lake Magadi
culture collection: DSM:3396
type material: type strain of Natronococcus occultus
plasmid: 1
country: Kenya
lat lon: 1.944 S 36.252 E

694430
type: Taxonomy
SIO_000068: taxonomy

NATOC_RS21375
type: Gene
subclass of: SO_0000704
RO_0002162: 694430
locus tag: NATOC_RS21375
old locus tag: Natoc_4354
so part of: sequence
location: 58..297
location: region:58-297:1
so has part: feature:58-297:1:exon
subclass of: SO_0000010

32188974
type: Gene
SIO_000068: ncbigene

position:58:1
position: 58
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:297:1
position: 297
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:58-297:1:exon

NATOC_RS21375
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 694430
locus tag: NATOC_RS21375
old locus tag: Natoc_4354
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006168534.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTRRDYQGPDLDATYQHISERPELDRLDEDAEDVVYATEAEQGEETTENVPIPGEDDEDQQRPLVPGQTTLTEWGVSCE
SIO_010081: NATOC_RS21375
subclass of: SO_0000673
so part of: NATOC_RS21375
location: 58..297
location: region:58-297:1
so has part: feature:58-297:1:exon

WP_015323205.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:58-297:1:exon

NATOC_RS19500
type: Gene
subclass of: SO_0000704
RO_0002162: 694430
locus tag: NATOC_RS19500
old locus tag: Natoc_4355
so part of: sequence
location: 290..805
location: region:290-805:1
so has part: feature:290-805:1:exon
subclass of: SO_0000010

14405784
type: Gene
SIO_000068: ncbigene

position:290:1
position: 290
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:805:1
position: 805
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:290-805:1:exon

NATOC_RS19500
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 694430
locus tag: NATOC_RS19500
old locus tag: Natoc_4355
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSSTDDAGELPDEFTFATQGVAETFVETLKEHRAFCSWCLAPLEVNPAVQFPGEPEARTLETDETYSQCHEPATETIPPKTDQQGQLVETSSERTICAECGVIDIDASSSRRNETLRTALKHVVWILEENDTAINPIVADQAVTEILAEGHTGQFVETLGTAIYRGTDTEG
SIO_010081: NATOC_RS19500
subclass of: SO_0000673
so part of: NATOC_RS19500
location: 290..805
location: region:290-805:1
so has part: feature:290-805:1:exon

WP_015323206.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:290-805:1:exon

NATOC_RS19505
type: Gene
subclass of: SO_0000704
RO_0002162: 694430
locus tag: NATOC_RS19505
old locus tag: Natoc_4356
so part of: sequence
location: 1460..1747
location: region:1460-1747:1
so has part: feature:1460-1747:1:exon
subclass of: SO_0000010

14405785
type: Gene
SIO_000068: ncbigene

position:1460:1
position: 1460
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1747:1
position: 1747
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1460-1747:1:exon

NATOC_RS19505
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 694430
locus tag: NATOC_RS19505
old locus tag: Natoc_4356
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTECNHFDEDELRRITAVCHEEGVDPGDVAVVPNKDGDDYDLRNRWQVAEDKATAAEFVSKALRSDSFGEKLPPSEVADMSFVEMVAEFQKQTNY
SIO_010081: NATOC_RS19505
subclass of: SO_0000673
so part of: NATOC_RS19505
location: 1460..1747
location: region:1460-1747:1
so has part: feature:1460-1747:1:exon

WP_049888974.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1460-1747:1:exon

NATOC_RS19510
type: Gene
subclass of: SO_0000704
RO_0002162: 694430
locus tag: NATOC_RS19510
old locus tag: Natoc_4357
so part of: sequence
location: 1753..2397
location: region:1753-2397:1
so has part: feature:1753-2397:1:exon
subclass of: SO_0000010

14405786
type: Gene
SIO_000068: ncbigene

position:1753:1
position: 1753
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2397:1
position: 2397
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1753-2397:1:exon

NATOC_RS19510
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 694430
locus tag: NATOC_RS19510
old locus tag: Natoc_4357
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSDDIDLNDTQLALLAEHRKHGSPNDATVISGDVASQLDRLDTDALSSVDNPAVVDSKSLDRTDAQRVIEASASVDDPVIMSRSEKESLEENAKVARDALGKILREEKDLHSDTVDAMSLDALASEFRGEDSVTLDVLSQQPETGGAPDEDDEPNGDVDALSTDQREAVRDKLDSIDRLSNRTPEYCDKLKREVRDMVGLEDVSEVDHLDRSAL
SIO_010081: NATOC_RS19510
subclass of: SO_0000673
so part of: NATOC_RS19510
location: 1753..2397
location: region:1753-2397:1
so has part: feature:1753-2397:1:exon

WP_015323208.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1753-2397:1:exon

NATOC_RS19515
type: Gene
subclass of: SO_0000704
RO_0002162: 694430
locus tag: NATOC_RS19515
old locus tag: Natoc_4358
so part of: sequence
location: 2400..2789
location: region:2400-2789:1
so has part: feature:2400-2789:1:exon
subclass of: SO_0000010

14405787
type: Gene
SIO_000068: ncbigene

position:2400:1
position: 2400
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2789:1
position: 2789
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2400-2789:1:exon

NATOC_RS19515
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 694430
locus tag: NATOC_RS19515
old locus tag: Natoc_4358
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MADDSRADALRAKIDRLEDRTPEYVENELKPELESLTGESSSDAASGESQPEIVDALAGEYDVQDLNDPAFIDSEIETLRTRRDAMSDRCPDHAETLSQRVDALESVKPAAENEYVETDSWDALVDYSK
SIO_010081: NATOC_RS19515
subclass of: SO_0000673
so part of: NATOC_RS19515
location: 2400..2789
location: region:2400-2789:1
so has part: feature:2400-2789:1:exon

WP_015323209.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2400-2789:1:exon

NATOC_RS19520
type: Gene
subclass of: SO_0000704
RO_0002162: 694430
locus tag: NATOC_RS19520
old locus tag: Natoc_4359
so part of: sequence
location: 2798..3001
location: region:2798-3001:1
so has part: feature:2798-3001:1:exon
subclass of: SO_0000010

14405788
type: Gene
SIO_000068: ncbigene

position:2798:1
position: 2798
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3001:1
position: 3001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2798-3001:1:exon

NATOC_RS19520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 694430
locus tag: NATOC_RS19520
old locus tag: Natoc_4359
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDSAAFDPETDEGCSLAHITIKRTYDKLQEEGYEDEAESLREPGGQRQKALKLRKEHLQGWDPLNGD
SIO_010081: NATOC_RS19520
subclass of: SO_0000673
so part of: NATOC_RS19520
location: 2798..3001
location: region:2798-3001:1
so has part: feature:2798-3001:1:exon

WP_157224708.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2798-3001:1:exon

NATOC_RS19525
type: Gene
subclass of: SO_0000704
RO_0002162: 694430
locus tag: NATOC_RS19525
old locus tag: Natoc_4360
so part of: sequence
location: 3074..3331
location: region:3074-3331:1
so has part: feature:3074-3331:1:exon
subclass of: SO_0000010

14405789
type: Gene
SIO_000068: ncbigene

position:3074:1
position: 3074
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3331:1
position: 3331
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3074-3331:1:exon

NATOC_RS19525
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 694430
locus tag: NATOC_RS19525
old locus tag: Natoc_4360
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTDLSEEIKEKRDEAVAELDEIAEHARYKSLGDGRIRNPEHERIRLKYLRVMISAQDSKRKYIADRELEDMHERLERLEERDGIK
SIO_010081: NATOC_RS19525
subclass of: SO_0000673
so part of: NATOC_RS19525
location: 3074..3331
location: region:3074-3331:1
so has part: feature:3074-3331:1:exon

WP_015323211.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3074-3331:1:exon

NATOC_RS19530
type: Gene
subclass of: SO_0000704
RO_0002162: 694430
locus tag: NATOC_RS19530
old locus tag: Natoc_4361
so part of: sequence
location: 3361..3549
location: region:3361-3549:1
so has part: feature:3361-3549:1:exon
subclass of: SO_0000010

14405790
type: Gene
SIO_000068: ncbigene

position:3361:1
position: 3361
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3549:1
position: 3549
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3361-3549:1:exon

NATOC_RS19530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 694430
locus tag: NATOC_RS19530
old locus tag: Natoc_4361
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDRIESDNEYPEMSLAVLLSYDVEDMETVDQERGLVRVDGQTYAAGSLRESLFDRLEEFTDE
SIO_010081: NATOC_RS19530
subclass of: SO_0000673
so part of: NATOC_RS19530
location: 3361..3549
location: region:3361-3549:1
so has part: feature:3361-3549:1:exon

WP_169330938.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3361-3549:1:exon

NATOC_RS23115
type: Gene
subclass of: SO_0000704
RO_0002162: 694430
locus tag: NATOC_RS23115
so part of: sequence
location: 3542..3664
location: region:3542-3664:1
so has part: feature:3542-3664:1:exon
subclass of: SO_0000010

80458440
type: Gene
SIO_000068: ncbigene

position:3542:1
position: 3542
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3664:1
position: 3664
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3542-3664:1:exon

NATOC_RS23115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 694430
locus tag: NATOC_RS23115
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNRRTLEKRLDRLEDETGEQPLEEFPSILMQNLREQYGYD
SIO_010081: NATOC_RS23115
subclass of: SO_0000673
so part of: NATOC_RS23115
location: 3542..3664
location: region:3542-3664:1
so has part: feature:3542-3664:1:exon

WP_281170498.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3542-3664:1:exon

NATOC_RS22075
type: Gene
subclass of: SO_0000704
RO_0002162: 694430
locus tag: NATOC_RS22075
so part of: sequence
location: 3657..3827
location: region:3657-3827:1
so has part: feature:3657-3827:1:exon
subclass of: SO_0000010

43302202
type: Gene
SIO_000068: ncbigene

position:3657:1
position: 3657
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3827:1
position: 3827
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3657-3827:1:exon

NATOC_RS22075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 694430
locus tag: NATOC_RS22075
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTKRNIKRRLDTLEDEREPEPTSWMEAWDVPEVLWSDRTAAWRYAMTGGESHPELE
SIO_010081: NATOC_RS22075
subclass of: SO_0000673
so part of: NATOC_RS22075
location: 3657..3827
location: region:3657-3827:1
so has part: feature:3657-3827:1:exon

WP_157224709.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3657-3827:1:exon

NATOC_RS19535
type: Gene
subclass of: SO_0000704
RO_0002162: 694430
locus tag: NATOC_RS19535
old locus tag: Natoc_4362
so part of: sequence
location: 3831..4049
location: region:3831-4049:1
so has part: feature:3831-4049:1:exon
subclass of: SO_0000010

14405791
type: Gene
SIO_000068: ncbigene

position:3831:1
position: 3831
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4049:1
position: 4049
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3831-4049:1:exon

NATOC_RS19535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 694430
locus tag: NATOC_RS19535
old locus tag: Natoc_4362
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRRDLENRLSRLEGRGNGDKDGLQITISMHKVDENGENAGVVKEIQCGFGENGGWYSKQTDDIDSVGVSHED
SIO_010081: NATOC_RS19535
subclass of: SO_0000673
so part of: NATOC_RS19535
location: 3831..4049
location: region:3831-4049:1
so has part: feature:3831-4049:1:exon

WP_015323213.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3831-4049:1:exon

NATOC_RS19540
type: Gene
subclass of: SO_0000704
RO_0002162: 694430
locus tag: NATOC_RS19540
old locus tag: Natoc_4364
so part of: sequence
location: complement(5130..5351)
location: region:5130-5351:-1
so has part: feature:5130-5351:-1:exon
subclass of: SO_0000010

14405793
type: Gene
SIO_000068: ncbigene

position:5130:-1
position: 5130
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5351:-1
position: 5351
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5130-5351:-1:exon

NATOC_RS19540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 694430
locus tag: NATOC_RS19540
old locus tag: Natoc_4364
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSETIEIGEERKSAIKLFEEIRERRNALDENGVTVDTECTRCGDSIETEILPEESDEGTICEPCLKYELETTL
SIO_010081: NATOC_RS19540
subclass of: SO_0000673
so part of: NATOC_RS19540
location: complement(5130..5351)
location: region:5130-5351:-1
so has part: feature:5130-5351:-1:exon

WP_015323215.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5130-5351:-1:exon

NATOC_RS21380
type: Gene
subclass of: SO_0000704
RO_0002162: 694430
locus tag: NATOC_RS21380
old locus tag: Natoc_4365
so part of: sequence
location: complement(5645..5848)
location: region:5645-5848:-1
so has part: feature:5645-5848:-1:exon
subclass of: SO_0000010

32188975
type: Gene
SIO_000068: ncbigene

position:5645:-1
position: 5645
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5848:-1
position: 5848
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5645-5848:-1:exon

NATOC_RS21380
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 694430
locus tag: NATOC_RS21380
old locus tag: Natoc_4365
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPIPKAYRNKRNAPWNAPDAPECPDCEATVVDVDDHEDGCPIQKATPEELHRINEELAQPSYEPEGL
SIO_010081: NATOC_RS21380
subclass of: SO_0000673
so part of: NATOC_RS21380
location: complement(5645..5848)
location: region:5645-5848:-1
so has part: feature:5645-5848:-1:exon

WP_015323216.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5645-5848:-1:exon

NATOC_RS19545
type: Gene
subclass of: SO_0000704
RO_0002162: 694430
locus tag: NATOC_RS19545
old locus tag: Natoc_4366
so part of: sequence
location: complement(5848..6033)
location: region:5848-6033:-1
so has part: feature:5848-6033:-1:exon
subclass of: SO_0000010

14405795
type: Gene
SIO_000068: ncbigene

position:6033:-1
position: 6033
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5848-6033:-1:exon

NATOC_RS19545
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 694430
locus tag: NATOC_RS19545
old locus tag: Natoc_4366
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQSTTLLDEARAVAGYEPADVDMSRFPDHVDVETAREIDSAMKRAADKQLEANEQPPEVLG
SIO_010081: NATOC_RS19545
subclass of: SO_0000673
so part of: NATOC_RS19545
location: complement(5848..6033)
location: region:5848-6033:-1
so has part: feature:5848-6033:-1:exon

WP_015323217.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5848-6033:-1:exon

NATOC_RS19550
type: Gene
subclass of: SO_0000704
RO_0002162: 694430
locus tag: NATOC_RS19550
old locus tag: Natoc_4367
so part of: sequence
location: complement(6033..6290)
location: region:6033-6290:-1
so has part: feature:6033-6290:-1:exon
subclass of: SO_0000010

14405796
type: Gene
SIO_000068: ncbigene

position:6290:-1
position: 6290
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6033-6290:-1:exon

NATOC_RS19550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 694430
locus tag: NATOC_RS19550
old locus tag: Natoc_4367
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008419467.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSIYNVRTEDDCGEQNDETTVLEAAGDCEVTESSDVWEGPFPEYNKYGGLTGCSYVRCRDCGREVLTGRKEFASHRDGCRFEGEN
SIO_010081: NATOC_RS19550
subclass of: SO_0000673
so part of: NATOC_RS19550
location: complement(6033..6290)
location: region:6033-6290:-1
so has part: feature:6033-6290:-1:exon

WP_015323218.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6033-6290:-1:exon

NATOC_RS19555
type: Gene
subclass of: SO_0000704
RO_0002162: 694430
locus tag: NATOC_RS19555
old locus tag: Natoc_4368
so part of: sequence
location: 6494..6721
location: region:6494-6721:1
so has part: feature:6494-6721:1:exon
subclass of: SO_0000010

14405797
type: Gene
SIO_000068: ncbigene

position:6494:1
position: 6494
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6721:1
position: 6721
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6494-6721:1:exon

NATOC_RS19555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 694430
locus tag: NATOC_RS19555
old locus tag: Natoc_4368
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008445928.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: winged helix-turn-helix domain-containing protein
translation: MVKDRDEESGQYTETVTDEEIAEFVRNSNGLTTSEVADEFDYERPTAYRRLKSLEESGDVQSRKIGNSLLWESSE
SIO_010081: NATOC_RS19555
subclass of: SO_0000673
so part of: NATOC_RS19555
location: 6494..6721
location: region:6494-6721:1
so has part: feature:6494-6721:1:exon

WP_157224710.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6494-6721:1:exon

NATOC_RS19560
type: Gene
subclass of: SO_0000704
RO_0002162: 694430
locus tag: NATOC_RS19560
old locus tag: Natoc_4369
so part of: sequence
location: 6790..7119
location: region:6790-7119:1
so has part: feature:6790-7119:1:exon
subclass of: SO_0000010

14405798
type: Gene
SIO_000068: ncbigene

position:6790:1
position: 6790
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7119:1
position: 7119
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6790-7119:1:exon

NATOC_RS19560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 694430
locus tag: NATOC_RS19560
old locus tag: Natoc_4369
inference: COORDINATES: protein motif:HMM:NF013561.2
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ribbon-helix-helix protein, CopG family
translation: MKLDESRVEELDSIAEDDGVSRSEVIRDLLDDALNTGDDERVQELEQRIHDLETELERVHREKRQILEQREEHQELVKAVQSEQSLAEKKAQAGALTRAKWWLTGMPSD
SIO_010081: NATOC_RS19560
subclass of: SO_0000673
so part of: NATOC_RS19560
location: 6790..7119
location: region:6790-7119:1
so has part: feature:6790-7119:1:exon

WP_169330939.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6790-7119:1:exon

NATOC_RS19565
type: Gene
subclass of: SO_0000704
RO_0002162: 694430
locus tag: NATOC_RS19565
old locus tag: Natoc_4370
so part of: sequence
location: 7265..7645
location: region:7265-7645:1
so has part: feature:7265-7645:1:exon
subclass of: SO_0000010

14405799
type: Gene
SIO_000068: ncbigene

position:7265:1
position: 7265
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7645:1
position: 7645
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7265-7645:1:exon

NATOC_RS19565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 694430
locus tag: NATOC_RS19565
old locus tag: Natoc_4370
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008364441.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTGAGDDVQYFDWVEYPHARVRVEIDKSEGRVTRFVVQLERLVNNEWSEVVRFDHEPKNPNGHDITEEGLHMDVYRESKKARVKDDFPPVPLSDAPRYCITYIRKNADQLLRRFEQWHDLNDPTTR
SIO_010081: NATOC_RS19565
subclass of: SO_0000673
so part of: NATOC_RS19565
location: 7265..7645
location: region:7265-7645:1
so has part: feature:7265-7645:1:exon

WP_015323221.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7265-7645:1:exon

NATOC_RS19570
type: Gene
subclass of: SO_0000704
RO_0002162: 694430
locus tag: NATOC_RS19570
old locus tag: Natoc_4371
so part of: sequence
location: 7612..7809
location: region:7612-7809:1
so has part: feature:7612-7809:1:exon
subclass of: SO_0000010

14405800
type: Gene
SIO_000068: ncbigene

position:7612:1
position: 7612
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7809:1
position: 7809
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7612-7809:1:exon

NATOC_RS19570
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 694430
locus tag: NATOC_RS19570
old locus tag: Natoc_4371
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MARSERPHDEITDDELESFEDGLQNLEDRVTEFLAEGTDRTPEDIDAAIDDYDMPDPLEDRPVDD
SIO_010081: NATOC_RS19570
subclass of: SO_0000673
so part of: NATOC_RS19570
location: 7612..7809
location: region:7612-7809:1
so has part: feature:7612-7809:1:exon

WP_015323222.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7612-7809:1:exon

NATOC_RS19575
type: Gene
subclass of: SO_0000704
RO_0002162: 694430
locus tag: NATOC_RS19575
old locus tag: Natoc_4374
so part of: sequence
location: 9555..12929
location: region:9555-12929:1
so has part: feature:9555-12929:1:exon
subclass of: SO_0000010

14405803
type: Gene
SIO_000068: ncbigene

position:9555:1
position: 9555
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12929:1
position: 12929
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9555-12929:1:exon

NATOC_RS19575
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 694430
locus tag: NATOC_RS19575
old locus tag: Natoc_4374
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: DUF927 domain-containing protein
translation: MNGDRPDRPDALEVNSDGVAGELKARNQWLVWGYEWKEDREEWSKVPKDGSGGGYRIDATDPENGVTFDVAVETYESGNYDGLGYITDGDSLIVGFDWDDCRDPEQPHGSVPDIVGEAIADLDTYTEVSPSGTGYRQFAFGTRPDGGSRKDLPCDPVLEDTPHLEMYDGTGGRYLTVTGQHVDGTPEDVETRPQETKKIHEEFIGEDGSNDNDGGNSSQSAEPVDLDDRELIEEAKNAGNGDKFRQLWNGNTAGYPSQSEADAALCSMLAFWTAEDAHRMDRLFRDSGLMRDKWDEDRGAQTYGERTIQNAIANNSDVYNPSSSSYSVSDSLDSGSQSEASSQGGPVNFDEHNGCYGQWYTDEDGESHFDSWCNFTVQVESFLTEKETGDKWLELTVIPSTDEDPFTVEISPAALGDFRKFRKEVLAEGLTTTFDGGSSELNRLKEYIGTRQVPERVGTHQMGYHDGEIVLPTGVIGSDGWEDDPSYTHLETGTVMDRVCSIDPDKELSEDDIDDVRRTLRLLPETRDSERFLSVVGWFYASALRPLVMDWEGEFNHLNVLGDTEAGKTSTLTTLWQLFGMDAEPMSAKDESRYTLTGTMASSSGVPLLYDEYKPGEMATWRVKTFHDLLRSATIGSTAQRGNADGPNDVFKISAPLAIAGEQRIQGPAEKRRCVMTTFRRETTTAGSDTARAFAKLNGDSYRDENGEITRSEPVDFDAHALAYYQWIAAQDTDELRDLWDRAGERAANLLERFGVLEDLGDAPQQGIQTVLFGMAVYRQFALDMGLSKDEIDEIVPESDIADAVEFSSGVFAKTGRVSHVDRFIELCARASSNDYLAEDEHYTFVHKGTDREELRINTSKAFDRVTKFVADFNITGEDLLNRHSDYRSRFSEAYERSGSYVVADQQRSPPIGRALGINVSRAENNLEDFTRSRFSGESEGTSDEEDTVSICDLDAGMHQERVIVTVAEELEAPDWLGGKGYFSDDDGNLIQYEIAEGADPLGDFSEGDEVTLENFKIESRNGVETVVLSGISETSAASINGQVDSYDRAATDGGQENDSTTTFGEMKNEAQLFVANAKGNAIDCSRVHNHLVEEFGVSPEEAEEAAEDSRLIYHGESGVYSIN
SIO_010081: NATOC_RS19575
subclass of: SO_0000673
so part of: NATOC_RS19575
location: 9555..12929
location: region:9555-12929:1
so has part: feature:9555-12929:1:exon

WP_015323225.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9555-12929:1:exon