Solidesulfovibrio carbinoliphilus subsp. oakridgensis strain FW-101-2B plasmid pFW10102, whole genome shotgun sequence.
type: Entry
definition: Solidesulfovibrio carbinoliphilus subsp. oakridgensis strain FW-101-2B plasmid pFW10102, whole genome shotgun sequence.
sequence version: NZ_CM001370.1
sequence date: 2023-02-10
sequence: sequence
division: CON
label: NZ_CM001370.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02256536
keyword: WGS
keyword: GSC:MIGS:2.1
keyword: NONCONTIGUOUS_FINISHED
keyword: RefSeq
source: Solidesulfovibrio carbinoliphilus subsp. oakridgensis
organism: Solidesulfovibrio carbinoliphilus subsp. oakridgensis
taxonomy: Bacteria; Thermodesulfobacteriota; Desulfovibrionia; Desulfovibrionales; Desulfovibrionaceae; Solidesulfovibrio.
reference: 1
references: 25767232
reference: 2
reference: 3
reference: 4
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM001370.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4086280\nSource DNA and organism available from Terry C. Hazen\n(TCHazen@lbl.gov)\nContacts: Terry C. Hazen (TCHazen@lbl.gov)\n Tanja Woyke (microbe@cuba.jgi-psf.org)\nAnnotation done by JGI-ORNL and JGI-PGF\nFinishing done by JGI-LANL\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. it is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##MIGS-Data-START##\ninvestigation_type :: bacteria_archaea\nproject_name :: Desulfovibrio sp. FW1012B\ncollection_date :: Missing\nlat_lon :: Missing\ndepth :: Missing\nalt_elev :: Missing\ncountry :: Missing\nenvironment :: Fresh water, Animal intestinal microflora,\n Mud, Sea water, Soil\nnum_replicons :: 3\nref_biomaterial :: Missing\nbiotic_relationship :: Free living\ntrophic_level :: Missing\nrel_to_oxygen :: Obligate anaerobe\nisol_growth_condt :: Missing\nsequencing_meth :: WGS\nassembly :: Newbler v. 2.3 (pre-release)\nfinishing_strategy :: Finished\nGOLD Stamp ID :: Gi03938\nFunding Program :: DOE-GTL 2007\nGene Calling Method :: Prodigal 1.4, GenePRIMP\nIsolation Site :: ORFRC groundwater during biostimulation for\n uranium bioreduction.\nCell Shape :: Rod-shaped\nMotility :: Motile\nSporulation :: Sporulating\nTemperature Range :: Mesophile\nTemperature Optimum :: 37C\nGram Staining :: Gram-\nDiseases :: None\n##MIGS-Data-END##\n\n##Genome-Assembly-Data-START##\nFinishing Goal :: Noncontiguous Finished\nCurrent Finishing Sta…

sequence
subclass of: SO_0000155
sequence length: 21111
topology: circular
so has quality: SO_0000988
location: 1..21111
location: region:1-21111:1
RO_0002162: 694327

NZ_CM001370
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02256536
type: BioSample
SIO_000068: biosample

1
title: High-Quality Draft Genome Sequence of Desulfovibrio carbinoliphilus FW-101-2B, an Organic Acid-Oxidizing Sulfate-Reducing Bacterium Isolated from Uranium(VI)-Contaminated Groundwater
author: Ramsay, B.D.
author: Hwang, C.
author: Woo, H.L.
author: Carroll, S.L.
author: Lucas, S.
author: Han, J.
author: Lapidus, A.L.
author: Cheng, J.F.
author: Goodwin, L.A.
author: Pitluck, S.
author: Peters, L.
author: Chertkov, O.
author: Held, B.
author: Detter, J.C.
author: Han, C.S.
author: Tapia, R.
author: Land, M.L.
author: Hauser, L.J.
author: Kyrpides, N.C.
author: Ivanova, N.N.
author: Mikhailova, N.
author: Pagani, I.
author: Woyke, T.
author: Arkin, A.P.
author: Dehal, P.
author: Chivian, D.
author: Criddle, C.S.
author: Wu, W.
author: Chakraborty, R.
author: Hazen, T.C.
author: Fields, M.W.
journal: Genome Announc 3 (2), e00092-15 (2015)
pubmed: 25767232
comments: Publication Status: Online-Only

25767232
type: PubMed
SIO_000068: pubmed

2
title: Complete sequence of chromosome Desulfovibrio sp. FW1012B
author: Lucas, S.
author: Han, J.
author: Lapidus, A.
author: Cheng, J.-F.
author: Goodwin, L.
author: Pitluck, S.
author: Peters, L.
author: Chertkov, O.
author: Held, B.
author: Detter, J.C.
author: Han, C.
author: Tapia, R.
author: Land, M.
author: Hauser, L.
author: Kyrpides, N.
author: Ivanova, N.
author: Mikhailova, N.
author: Pagani, I.
author: Hazen, T.C.
author: Fields, M.W.
author: Hwang, C.
author: Ramsay, B.
author: Arkin, A.P.
author: Dehal, P.
author: Chivian, D.
author: Criddle, C.S.
author: Carroll, S.L.
author: Wu, W.
author: Woyke, T.
journal: Unpublished

3
title: Direct Submission
author: Lucas, S.
author: Han, J.
author: Lapidus, A.
author: Cheng, J.-F.
author: Goodwin, L.
author: Pitluck, S.
author: Peters, L.
author: Chertkov, O.
author: Held, B.
author: Detter, J.C.
author: Han, C.
author: Tapia, R.
author: Land, M.
author: Hauser, L.
author: Kyrpides, N.
author: Ivanova, N.
author: Mikhailova, N.
author: Pagani, I.
author: Hazen, T.C.
author: Fields, M.W.
author: Hwang, C.
author: Ramsay, B.
author: Arkin, A.P.
author: Dehal, P.
author: Chivian, D.
author: Criddle, C.S.
author: Carroll, S.L.
author: Wu, W.
author: Woyke, T.
journal: Submitted (14-JUN-2011) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA

4
title: Direct Submission
author: Lucas, S.
author: Copeland, A.
author: Lapidus, A.
author: Tice, H.
author: Bruce, D.
author: Goodwin, L.
author: Pitluck, S.
author: Larimer, F.
author: Land, M.L.
author: Hauser, L.
author: Hazen, T.C.
journal: Submitted (07-DEC-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21111:1
position: 21111
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-21111:1:source
so part of: sequence
organism: Solidesulfovibrio carbinoliphilus subsp. oakridgensis
mol type: genomic DNA
strain: FW-101-2B
isolation source: ORFRC groundwater during biostimulation for uranium bioreduction
sub species: oakridgensis
type material: reference strain of Desulfovibrio carbinoliphilus subsp. oakridgensis
plasmid: pFW10102

694327
type: Taxonomy
SIO_000068: taxonomy

DFW101_RS19285
type: Gene
subclass of: SO_0000704
RO_0002162: 694327
locus tag: DFW101_RS19285
old locus tag: DFW101_3735
so part of: sequence
location: 171..992
location: region:171-992:1
so has part: feature:171-992:1:exon
subclass of: SO_0000010

position:171:1
position: 171
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:992:1
position: 992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:171-992:1:exon

DFW101_RS19285
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 694327
locus tag: DFW101_RS19285
old locus tag: DFW101_3735
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006918406.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: universal stress protein
translation: MISLKKSYKFAIVALLVLIIAFFDYATALHLSKIDIVYRELYFIPILIGAYWFGKKGGIFTSLASSAVYLPCAMLGTPLGSATYFSNMLEIVFFNAAGYFVGTYYDLRRSQFTLASSDYEEELPKPSKNILFSIYSAENTVRAARYLADNFSHQSTTTITMVGLIRVQSQDIFATKQEFNVAFEKSNTEMSILVERVKTILLQGGVSETNIRERTITVEGKTMAKEILEEQHRGHYDMIIVGCTKMPKAQELLFGNTNVALVREAPCPVLIVC
SIO_010081: DFW101_RS19285
subclass of: SO_0000673
so part of: DFW101_RS19285
location: 171..992
location: region:171-992:1
so has part: feature:171-992:1:exon

WP_006918406.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:171-992:1:exon

DFW101_RS18515
type: Gene
subclass of: SO_0000704
RO_0002162: 694327
locus tag: DFW101_RS18515
old locus tag: DFW101_3736
so part of: sequence
location: 1019..2032
location: region:1019-2032:1
so has part: feature:1019-2032:1:exon
subclass of: SO_0000010

position:1019:1
position: 1019
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2032:1
position: 2032
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1019-2032:1:exon

DFW101_RS18515
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 694327
locus tag: DFW101_RS18515
old locus tag: DFW101_3736
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006918407.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATP-binding protein
translation: MNLKAIMIVGSIVVVTALHYGVAPSHPALHLLHRELYFIPILLAGFWFGLRVALLTSLAITVLYLPPILSGKMLHDTPATVIAQLIMFNVVALLMGLLEDRRAREQERLLGAEKMALLGRAAAAIGLEVKDVVVALRRLVREGGGFRNPGVEPDVQCEIDRLDHLLYALVRVIPSHQVPAISLDINDLVTASAARLESVAHKVGVKLMVENDPAGCRTRAVSEEFGGIIDALVKNAVEASPAGGIVTIATGRQGQFCLITVRDKGQGIPPEHIDKIFMPFFSTKPRGHGLTLASTKKFLKDIGGDITVESEPGKGAAFHLHIPRERAGDEPLMGFGA
SIO_010081: DFW101_RS18515
subclass of: SO_0000673
so part of: DFW101_RS18515
location: 1019..2032
location: region:1019-2032:1
so has part: feature:1019-2032:1:exon

WP_006918407.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1019-2032:1:exon

DFW101_RS18520
type: Gene
subclass of: SO_0000704
RO_0002162: 694327
locus tag: DFW101_RS18520
old locus tag: DFW101_3737
so part of: sequence
location: 2097..4061
location: region:2097-4061:1
so has part: feature:2097-4061:1:exon
subclass of: SO_0000010

position:2097:1
position: 2097
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4061:1
position: 4061
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2097-4061:1:exon

DFW101_RS18520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 694327
locus tag: DFW101_RS18520
old locus tag: DFW101_3737
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006918408.1
GO function: GO:0004672 - protein kinase activity [Evidence IEA]
GO process: GO:0006468 - protein phosphorylation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: bifunctional serine/threonine-protein kinase/formylglycine-generating enzyme family protein
translation: MADDEKKPLFEEGTVINDKWTILDHIATGGKGEVYLAKQRDLERRVALKIMSRAFLESLADDEAEVAVELERFRREVQVMARLRHPNILQVFDYDQVDIDGSPLNYLVMEYVPGPTLTQTMPEEGLGSDEATLKSWIREYFLPVCNGMEAVHAQGVIHRDLKPANVLIDDGTPKIADFGLAGGNVRDCVTQDHHIIGTLPYMAEEQFLDLNLADIRADVFSLGRVLFEAVAGKKALKKAKPFETVGLENPVTDFQKRLDRIIRQATAKKVAKRLPSIRSLRQTLEDLVVEAPVKETRQAAPHRTAWFVSAVVLAVLFGGGLLYHFLWQMPSRQIGQEAVNTEMTAPSSTPPAAPQSPSTAEAPAGHHPGEAAPQPPLAPGETPPPRFSGRNGSTFLMVPGGEISPGVDGAPDTVLVPSFYMQETQITNHQFVMFLNLVRDRVTIKEGAVSGEDGIWLLLGEISPWYEPITYRQGMFVMDPATAMNPVVRVSAKGARAFADFYGSRLPTVAEWRLAQRLGEDVGKTNSLAPSRVPFVLAQGMEMDGWWQERTPPKQKQVKPAVPTKPKQVKPAIPERKLFSVADAPANRLGIRGLGTNINEWTTMVIGTETHYFVTGGPPTDASLIEPLKRQSWEGFADVGFRTVIPMPQPQSSL
SIO_010081: DFW101_RS18520
subclass of: SO_0000673
so part of: DFW101_RS18520
location: 2097..4061
location: region:2097-4061:1
so has part: feature:2097-4061:1:exon

WP_009183050.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2097-4061:1:exon

DFW101_RS18525
type: Gene
subclass of: SO_0000704
RO_0002162: 694327
locus tag: DFW101_RS18525
old locus tag: DFW101_3738
so part of: sequence
location: 4074..4802
location: region:4074-4802:1
so has part: feature:4074-4802:1:exon
subclass of: SO_0000010

position:4074:1
position: 4074
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4802:1
position: 4802
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4074-4802:1:exon

DFW101_RS18525
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 694327
locus tag: DFW101_RS18525
old locus tag: DFW101_3738
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009183051.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: protein phosphatase 2C domain-containing protein
translation: MQAFGASDQGRVRRQNQDRFLVKEFPDGSMLLAVADGLGGQAGGDVAAQAVVDALARLEPDGGSSECLLALAVETAEHVIREKTLIDPRLEGMGSTATVAWVQDGFAVYAHLGDSRLYLWRKDILSQITTDHTFLQDFLDDGSITPEQAKTHPFRNILEKCVGCAGSEPDTGSIVLHEGDTLILCTDGLFKELQEADIATVMASNGTTQQMATTLLNQALAAGGRDNTTVIVMQSTPTSSNS
SIO_010081: DFW101_RS18525
subclass of: SO_0000673
so part of: DFW101_RS18525
location: 4074..4802
location: region:4074-4802:1
so has part: feature:4074-4802:1:exon

WP_009183051.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4074-4802:1:exon

DFW101_RS18530
type: Gene
subclass of: SO_0000704
RO_0002162: 694327
locus tag: DFW101_RS18530
old locus tag: DFW101_3739
so part of: sequence
location: complement(5298..6347)
location: region:5298-6347:-1
so has part: feature:5298-6347:-1:exon
subclass of: SO_0000010

position:5298:-1
position: 5298
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6347:-1
position: 6347
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5298-6347:-1:exon

DFW101_RS18530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 694327
locus tag: DFW101_RS18530
old locus tag: DFW101_3739
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006918410.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Fic family protein
translation: MIKTDSIRITPEFLAIIAECDEFKGAWRALGALAPERLNALRHVATIESIGSSTRIEGAKLSDREVERLLSDLKINSFITRDEQEVAGYAETMGTIFEVWPHIPLTENHIKQLHRDLLRHSEKDDRHRGGYKTLPNSVVAFDETGQQIGIIFETASPFDTPRLMAELVEWYIEARETRRLHPLLLIAVFVVVFLEIHPFQDGNGRLSRILTTLLLLQAGYTYVPYSSLESVIENSKEAYYLALRQTQGTIRTDTPNWQPWILFFLQALAQQKRRLAAKVEREKITLATLPELAAQIIEQARQHGRVTIGEMAKVTGASRNTLKVHFRRLVEQGHLTRYGTGKGSWYALP
SIO_010081: DFW101_RS18530
subclass of: SO_0000673
so part of: DFW101_RS18530
location: complement(5298..6347)
location: region:5298-6347:-1
so has part: feature:5298-6347:-1:exon

WP_006918410.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5298-6347:-1:exon

DFW101_RS18535
type: Gene
subclass of: SO_0000704
RO_0002162: 694327
locus tag: DFW101_RS18535
old locus tag: DFW101_3740
so part of: sequence
location: 6615..7394
location: region:6615-7394:1
so has part: feature:6615-7394:1:exon
subclass of: SO_0000010

position:6615:1
position: 6615
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7394:1
position: 7394
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6615-7394:1:exon

DFW101_RS18535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 694327
locus tag: DFW101_RS18535
old locus tag: DFW101_3740
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006918411.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MSVIIACSNNKGGSGKTCCSVTLAHALANRGKRVLVCDLDTQCNATSLLLRIGDTPRNSLYELLSGTAETADCIYPSKYEMVDVLPNVEEVAAMEFDLIKEADLKLPLLRDRLRPHADAKYDFVFLDCPPNLGFWTMSALISANLVISPTVSGSGFSLDGLLRTIKLIKEIQQDTNPGLRFFRLLINNVDRRTTMGKVTMAQLADKLGSEMIFSTTIPASAQFQQAEHLRETVLRQNTKGPGAKAYRALAQEVLDLVGG
SIO_010081: DFW101_RS18535
subclass of: SO_0000673
so part of: DFW101_RS18535
location: 6615..7394
location: region:6615-7394:1
so has part: feature:6615-7394:1:exon

WP_006918411.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6615-7394:1:exon

DFW101_RS19715
type: Gene
subclass of: SO_0000704
RO_0002162: 694327
locus tag: DFW101_RS19715
so part of: sequence
location: 8179..8622
location: region:8179-8622:1
so has part: feature:8179-8622:1:exon
subclass of: SO_0000010

position:8179:1
position: 8179
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8622:1
position: 8622
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8179-8622:1:exon

DFW101_RS19715
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 694327
locus tag: DFW101_RS19715
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTWPHLVRAGFGADQMEQIVDNLDQLGKPTDRIVAGLDHAEWELENGKMLDKAGQPVADPCSWVFTALARTGYYRRPKGYVSPEEQAAKDAEAEAKAVVAARQAAEQAQFEAWRDGLSPDELADALRGHPGGPKDAWLKKMWRDRRN
SIO_010081: DFW101_RS19715
subclass of: SO_0000673
so part of: DFW101_RS19715
location: 8179..8622
location: region:8179-8622:1
so has part: feature:8179-8622:1:exon

WP_006918412.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8179-8622:1:exon

DFW101_RS18545
type: Gene
subclass of: SO_0000704
RO_0002162: 694327
locus tag: DFW101_RS18545
old locus tag: DFW101_3742
so part of: sequence
location: complement(8889..9407)
location: region:8889-9407:-1
so has part: feature:8889-9407:-1:exon
subclass of: SO_0000010

position:8889:-1
position: 8889
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9407:-1
position: 9407
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8889-9407:-1:exon

DFW101_RS18545
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 694327
locus tag: DFW101_RS18545
old locus tag: DFW101_3742
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006918413.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNKDVEEIFENIRDVVAVHQDDVAAMGKHVAQMKSELQTVGLSIRALEEASRKAEAAGQRITQQLTEAPRITRDRAKMWVGLAMLAALLFFAAGGYAGWRYAQDGVTKEIAQLPELAKWAASKEGKAVYQFATQGELQRLMRCQGDGWQVKNGVCYPFPNSETSKVHGWRMP
SIO_010081: DFW101_RS18545
subclass of: SO_0000673
so part of: DFW101_RS18545
location: complement(8889..9407)
location: region:8889-9407:-1
so has part: feature:8889-9407:-1:exon

WP_231584066.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8889-9407:-1:exon

DFW101_RS18550
type: Gene
subclass of: SO_0000704
RO_0002162: 694327
locus tag: DFW101_RS18550
old locus tag: DFW101_3743
so part of: sequence
location: complement(9410..9931)
location: region:9410-9931:-1
so has part: feature:9410-9931:-1:exon
subclass of: SO_0000010

position:9410:-1
position: 9410
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9931:-1
position: 9931
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9410-9931:-1:exon

DFW101_RS18550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 694327
locus tag: DFW101_RS18550
old locus tag: DFW101_3743
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006918414.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF5710 domain-containing protein
translation: MAEKTKLTAEERLKKIEQKRAKLAEEAAKIRKEARKKEANVKMKLGGLVWKAGLQDQPDNVILGILVAGFEKLEAERDSFEDIGRKKFEHDAKAKAEMKTKSQEEESENSGHGSAGVKNHLATPAAVRFYLNVPIEEKDAAKALGARWDGEHKKWWCHPADKEKFIKWWPAGA
SIO_010081: DFW101_RS18550
subclass of: SO_0000673
so part of: DFW101_RS18550
location: complement(9410..9931)
location: region:9410-9931:-1
so has part: feature:9410-9931:-1:exon

WP_006918414.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9410-9931:-1:exon

DFW101_RS18555
type: Gene
subclass of: SO_0000704
RO_0002162: 694327
locus tag: DFW101_RS18555
old locus tag: DFW101_3744
so part of: sequence
location: 10068..12905
location: region:10068-12905:1
so has part: feature:10068-12905:1:exon
subclass of: SO_0000010

position:10068:1
position: 10068
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12905:1
position: 12905
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10068-12905:1:exon

DFW101_RS18555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 694327
locus tag: DFW101_RS18555
old locus tag: DFW101_3744
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009183053.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MFWQSQNIAPHFRGDKVKKQKALNRNMACCFAGCSIVGMSTGTSGVAVAAYIDRDRYTRDLTGETFDFRNHKTDEPVLARGFELPPGSPGWDKQRLWDEVDKAEIATKHLARTGEVRLRAGAQLAKHYVFALPKDVQITDAQRIEMARQHIQEQFTDNGLACQWAIHMQAGNPHLHVLVTTRRLGREGLDKHKATDLNPDFARKNGKGFVSTQDRISEKWEAFQNRYFEEREFELRVDPRGVVFQLHEGKARHIEASWKTAENEARLEDARQTALVEPKTILEKLTARQCLFTERELNAVLKKAGVEDMIEREAAKQRVLSCPECVKLYDGQGQETGLYTSTLVRAEERAILELTDRKMREGGGHVSERARQQALSRKTLDPEQREAFDVMTAANRLCVIQGRAGAGKSYTMGAARDAFEVDGWRVVGLAPTNTVSRDMHTDGFQEASTVHAELLRQEKARTNPRSRVKAWDRKTVVFVDEAAMLDNRTMHRLLQQADVSGAKVVMIGDDAQLASIQRGGMYTEIRQKTDSALISLVRRQKQDWMRQASMDLADGKIKEAMTAYQEHDCIKAAKEPIEVLLQDWKRDVARNPDVNRFIYAGINTEVNRINDACSKTMRELGKVRGGITYACEKGEKKFQQTIGVGDRIQFNATAKNIDKNLINGNFGTVQKQSQKQIEVRLDSGAMVSFNPGEYKGFALGYAGTVYKGQGKTQTDVYALHGVTWNNRTTYVGATRHKGNFTLYVDSEKVKGFEQLARSMSRSQDRASTLGYLDERQANQVKERGRDRDGPALTLPGRSRVEEPSLDAPKLEIDPERLRAAREARDRQERFANPEKAREHIQAKARELRETITARDKHKAAMVKMRPESLDYRAAVKKLVRLEGKEQEADLVLRKSCKELAGTLGKQAVKAEIAKVFGLEKAGVFMQQCGLEKAVKHQIKGMDYSR
SIO_010081: DFW101_RS18555
subclass of: SO_0000673
so part of: DFW101_RS18555
location: 10068..12905
location: region:10068-12905:1
so has part: feature:10068-12905:1:exon

WP_009183053.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10068-12905:1:exon

DFW101_RS18560
type: Gene
subclass of: SO_0000704
RO_0002162: 694327
locus tag: DFW101_RS18560
old locus tag: DFW101_3745
so part of: sequence
location: complement(13021..14391)
location: region:13021-14391:-1
so has part: feature:13021-14391:-1:exon
subclass of: SO_0000010

position:13021:-1
position: 13021
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14391:-1
position: 14391
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13021-14391:-1:exon

DFW101_RS18560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 694327
locus tag: DFW101_RS18560
old locus tag: DFW101_3745
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006918417.1
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0008134 - transcription factor binding [Evidence IEA]
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: sigma 54-interacting transcriptional regulator
translation: MTAKHKATVLIVDDDQGHRTILLALINGWGYKAAGADDGTKAVTLAREKPFDLILMDVRMADMGGIEALKEIKAYNPSIPILIMTAYSNVESAVEAIKAGAYDYLTKPLDFDVLRLTMERALEHVSLKAENQELRQRLVSSFDPKNIVGRSEAMRRLMETVAMVAPSEATVLITGQSGTGKELIAKAIHFNSPRKNGPLVTVNCAALSETLLESELFGHEKGAFTGADKRREGRFMQANKGTIFLDEIGEISSAMQAKLLRVIQEREIQRVGSDNALRVDVRIVAATNRDLKAEVEAGRFRQDLYYRLNVMTLTVPPLRDRGEDVPLLAMHFLHKFAEANRKVAKGFTPQAMDMLLKYDWPGNVRELENAVERAVVLMPGDFVTEKELPLSVNQEKAHEEQNANQLIERGPAEILPLEAVEREAILAALEVTGGNKTEAAKQLGITRKTLLAKLQR
SIO_010081: DFW101_RS18560
subclass of: SO_0000673
so part of: DFW101_RS18560
location: complement(13021..14391)
location: region:13021-14391:-1
so has part: feature:13021-14391:-1:exon

WP_006918417.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13021-14391:-1:exon

DFW101_RS18565
type: Gene
subclass of: SO_0000704
RO_0002162: 694327
locus tag: DFW101_RS18565
old locus tag: DFW101_3746
so part of: sequence
location: complement(14388..16190)
location: region:14388-16190:-1
so has part: feature:14388-16190:-1:exon
subclass of: SO_0000010

position:14388:-1
position: 14388
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16190:-1
position: 16190
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14388-16190:-1:exon

DFW101_RS18565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 694327
locus tag: DFW101_RS18565
old locus tag: DFW101_3746
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006918420.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PAS domain-containing sensor histidine kinase
translation: MAGLFGREVIMQKRPKVWRKVVANVPPWLYLGSVFILVGIVVVMTMRNTHREKSLTAQTLLEKGAALIKAFESGARTGMGMHWRGDQFQVLLEEMANQPGIFYLAVTGEDGLILADSDKGKIGSRLHGPEEMKALAIGAKEKWRVTSLADGRKAFEVYRDFAPLARRDAAEYCEEEVWQYACPWSRPGSSQGTGRQAIFIAFDVAPFDAALAEDMHNTVILSAILLLLGVGGVMTLFWAQSYRFSRRQLQDTRAFASEIINNLPVGLITTDSDGKLAVVNSAAERISGLKAADIMGKIPEEVLPGAWCSLRDVVDKGEPVMEHETECSFDGEKNLPLSLSASKILNEEGTHLGNLFIFRDLGEVRRLQEEVRRKEKLAALGSLAAGVAHEIRNPLSSIKGFAKYFEGQCAEGSQGRELAAVMAQEVDRLNRVITELLDFARPSDLKTRSTDVGSLIEHSLRLVRQDAEGKKITVTFDRNAGLPVIAIDPDRLTQALLNLYLNAIQAMENGGTLAVRAAADGRGGVRIEVEDSGKGIAPESLSSIFNPYFTTKSSGTGLGLAIVQKIIEAHRGEVKVKSTPDRGTTFNILLPVGRPEGVAS
SIO_010081: DFW101_RS18565
subclass of: SO_0000673
so part of: DFW101_RS18565
location: complement(14388..16190)
location: region:14388-16190:-1
so has part: feature:14388-16190:-1:exon

WP_232286254.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14388-16190:-1:exon

DFW101_RS18570
type: Gene
subclass of: SO_0000704
RO_0002162: 694327
locus tag: DFW101_RS18570
old locus tag: DFW101_3747
so part of: sequence
location: 16439..16684
location: region:16439-16684:1
so has part: feature:16439-16684:1:exon
subclass of: SO_0000010

position:16439:1
position: 16439
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16684:1
position: 16684
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16439-16684:1:exon

DFW101_RS18570
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 694327
locus tag: DFW101_RS18570
old locus tag: DFW101_3747
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006918422.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SHOCT domain-containing protein
translation: MMWDCGFPLSSPWMGGTTFWGLGTILLLTALLGLFLFVSRRADKTSRADRDDSLGIIKERLARGEINPEEYREMKKVLEQA
SIO_010081: DFW101_RS18570
subclass of: SO_0000673
so part of: DFW101_RS18570
location: 16439..16684
location: region:16439-16684:1
so has part: feature:16439-16684:1:exon

WP_006918422.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16439-16684:1:exon

DFW101_RS19295
type: Gene
subclass of: SO_0000704
RO_0002162: 694327
locus tag: DFW101_RS19295
old locus tag: DFW101_3748
so part of: sequence
location: 16750..17058
location: region:16750-17058:1
so has part: feature:16750-17058:1:exon
subclass of: SO_0000010

position:16750:1
position: 16750
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17058:1
position: 17058
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16750-17058:1:exon

DFW101_RS19295
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 694327
locus tag: DFW101_RS19295
old locus tag: DFW101_3748
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006918423.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSVGLAAALVVGSLALVDAGTARAQATGPNQAATQTAAPGMYGQPGSYGNGYGSPCPWFAGPGYAQAGQPGYRQAANRYANAPRSYYGNYRYSGRSYGYPCW
SIO_010081: DFW101_RS19295
subclass of: SO_0000673
so part of: DFW101_RS19295
location: 16750..17058
location: region:16750-17058:1
so has part: feature:16750-17058:1:exon

WP_232286255.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16750-17058:1:exon

DFW101_RS18575
type: Gene
subclass of: SO_0000704
RO_0002162: 694327
locus tag: DFW101_RS18575
old locus tag: DFW101_3749
so part of: sequence
location: 17142..17411
location: region:17142-17411:1
so has part: feature:17142-17411:1:exon
subclass of: SO_0000010

position:17142:1
position: 17142
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17411:1
position: 17411
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17142-17411:1:exon

DFW101_RS18575
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 694327
locus tag: DFW101_RS18575
old locus tag: DFW101_3749
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSVLKKTTILAASAVLGLTLLAGISAQAQTTNQGTPSGQTVQATQPSTYTSGGAWGNMMGWVPPTTTTAPTTGYGYGGYDGWGWGCGWW
SIO_010081: DFW101_RS18575
subclass of: SO_0000673
so part of: DFW101_RS18575
location: 17142..17411
location: region:17142-17411:1
so has part: feature:17142-17411:1:exon

WP_009183054.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17142-17411:1:exon

DFW101_RS20115
type: Gene
subclass of: SO_0000704
RO_0002162: 694327
locus tag: DFW101_RS20115
old locus tag: DFW101_3751
so part of: sequence
location: 17827..18054
location: region:17827-18054:1
so has part: feature:17827-18054:1:exon
subclass of: SO_0000010

position:17827:1
position: 17827
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18054:1
position: 18054
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17827-18054:1:exon

DFW101_RS20115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 694327
locus tag: DFW101_RS20115
old locus tag: DFW101_3751
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009183055.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl except: (pos:17980..17982,aa:Sec)
transl table: 11
product: hypothetical protein
translation: MEKLVCYCFAYTASDIAGDVVANGKSTIMERIVSEKRVGGCQCATKNPSGRUCLADVRQVVDDTMRHNGITSSFS
SIO_010081: DFW101_RS20115
subclass of: SO_0000673
so part of: DFW101_RS20115
location: 17827..18054
location: region:17827-18054:1
so has part: feature:17827-18054:1:exon

WP_009183055.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17827-18054:1:exon

DFW101_RS18580
type: Gene
subclass of: SO_0000704
RO_0002162: 694327
locus tag: DFW101_RS18580
old locus tag: DFW101_3752
so part of: sequence
location: 18173..18622
location: region:18173-18622:1
so has part: feature:18173-18622:1:exon
subclass of: SO_0000010

position:18173:1
position: 18173
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18622:1
position: 18622
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18173-18622:1:exon

DFW101_RS18580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 694327
locus tag: DFW101_RS18580
old locus tag: DFW101_3752
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006917623.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: periplasmic heavy metal sensor
translation: MNTRKKTLGLALALAMVSLLGLSGLANAQMMGPGMMGGHGMGMMGGPMSGLTPEKQAVAQKLYNEHYTATAQLRQQLFTKQSELNAQLYGGATDDKKVQALTKEINDLLAKMYDAQVALQNQLTKEGIPAMGGMGMMGPGMMGGMGMCW
SIO_010081: DFW101_RS18580
subclass of: SO_0000673
so part of: DFW101_RS18580
location: 18173..18622
location: region:18173-18622:1
so has part: feature:18173-18622:1:exon

WP_006917623.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18173-18622:1:exon

DFW101_RS18585
type: Gene
subclass of: SO_0000704
RO_0002162: 694327
locus tag: DFW101_RS18585
old locus tag: DFW101_3753
so part of: sequence
location: 18717..20726
location: region:18717-20726:1
so has part: feature:18717-20726:1:exon
subclass of: SO_0000010

position:18717:1
position: 18717
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20726:1
position: 20726
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18717-20726:1:exon

DFW101_RS18585
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 694327
locus tag: DFW101_RS18585
old locus tag: DFW101_3753
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009106194.1
GO component: GO:0016020 - membrane [Evidence IEA]
GO process: GO:0007165 - signal transduction [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: methyl-accepting chemotaxis protein
translation: MAIFENWKIGTRLALGFGLVAAMFLVNIAMGLTLLKAVDNNAMRVVNQHLPNALRADQMGDAILRIQQVFTSIANQHKPDSGAEAEIDRLAKEFSGNAAHFLSLFRKEGNTEYQQVMLEIEDGFRKFLDESRGTLTVFHQQGMDKGHEASAKADAIRKTLEEGLDTLRTQQTGLAQSAAAEADGLVDLTRKVMLGSGVLALAVCLLVALSIRKRISLPLRHIARIASRIAEGETSLRVGMAGLDEVGELARALDHLLERIGESLALNRAVLNAVPDPIFMTDGEDVILVANDAATRLAGVSGERLVGRACTQAIKPGVCGTLLRPARQSGQDIGVIECHTASGHAFFQPRAVTVKDEQGKTLGFLEVARDVSEMVLKEREIAKHLECLVRVNGEVDQAASLIAEATDSIASQMEQVSAGATAQSERVSETVISMNQIGSSVGEVADNASKASRLAEDAKGKAREGALVVSNSVEAIGKVQELSGSLKQSLSLLGDQAEAIGRIMGVISDIADQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLAEKTMTATKEVGQAVERIQSGVGESILGMDEASSAIQHATSLATLSGQALEGIVPLVEETSRQVELIARAAEEQTSASAAINEHIRDVNEVSRETAVGVERSKQATADLAAMAHRLKELAGSGV
SIO_010081: DFW101_RS18585
subclass of: SO_0000673
so part of: DFW101_RS18585
location: 18717..20726
location: region:18717-20726:1
so has part: feature:18717-20726:1:exon

WP_009183056.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18717-20726:1:exon

DFW101_RS18590
type: Gene
subclass of: SO_0000704
RO_0002162: 694327
locus tag: DFW101_RS18590
old locus tag: DFW101_3754
so part of: sequence
location: 20746..21039
location: region:20746-21039:1
so has part: feature:20746-21039:1:exon
subclass of: SO_0000010

position:20746:1
position: 20746
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21039:1
position: 21039
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20746-21039:1:exon

DFW101_RS18590
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 694327
locus tag: DFW101_RS18590
old locus tag: DFW101_3754
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006918405.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPELPDSGKGPTEAQMDAVMGEAEKLRPQVNLVIGLSPWGYQGEVNFLDRAEDKRGLDVLIGGGHGSGNRGKIMAGGRTLWMRPFPKGKGVHHVNFE
SIO_010081: DFW101_RS18590
subclass of: SO_0000673
so part of: DFW101_RS18590
location: 20746..21039
location: region:20746-21039:1
so has part: feature:20746-21039:1:exon

WP_006918405.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20746-21039:1:exon