Rhipicephalus microplus isolate BomiB mitochondrion, complete genome.
type: Entry
definition: Rhipicephalus microplus isolate BomiB mitochondrion, complete genome.
sequence version: NC_023335.1
sequence date: 2023-04-03
sequence: sequence
division: INV
label: NC_023335.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
source: mitochondrion Rhipicephalus microplus (Boophilus microplus)
organism: Rhipicephalus microplus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Ixodida; Ixodoidea; Ixodidae; Rhipicephalinae; Rhipicephalus; Boophilus.
reference: 1
references: 24378079
reference: 2
reference: 3
comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The\nreference sequence is identical to KC503261.\n\n##Assembly-Data-START##\nAssembly Method :: Geneious v. R6\nSequencing Technology :: Illumina; Sanger dideoxy sequencing\n##Assembly-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 14905
topology: circular
so has quality: SO_0000988
location: 1..14905
location: region:1-14905:1
RO_0002162: 6941

NC_023335
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

1
title: Molecular phylogeny of soft ticks (Ixodida: Argasidae) inferred from mitochondrial genome and nuclear rRNA sequences
author: Burger, T.D.
author: Shao, R.
author: Labruna, M.B.
author: Barker, S.C.
journal: Ticks Tick Borne Dis
volume: 5
issue: 2
pages: 195-207
year: 2014
pubmed: 24378079

24378079
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
journal: Submitted (22-JAN-2014) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Burger, T.D.
author: Shao, R.
author: Barker, S.C.
journal: Submitted (16-JAN-2013) School of Chemistry and Molecular Biosciences, The University of Queensland, The University of Queensland, Brisbane, QLD 4072, Australia

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14905:1
position: 14905
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14905:1:source
so part of: sequence
organism: Rhipicephalus microplus
organelle: mitochondrion
mol type: genomic DNA
isolate: BomiB
country: Brazil: Mato Grosso do Sul

6941
type: Taxonomy
SIO_000068: taxonomy

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 6941
product: tRNA-Met
anticodon: (pos:33..35,aa:Met,seq:cat)
codon recognized: AUG
so part of: sequence
location: 1..67
location: region:1-67:1
so has part: feature:1-67:1:region

position:67:1
position: 67
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-67:1:region

ND2
type: Gene
subclass of: SO_0000704
RO_0002162: 6941
gene: ND2
so part of: sequence
location: 68..1024
location: region:68-1024:1
so has part: feature:68-1024:1:exon
subclass of: SO_0000010

18250947
type: Gene
SIO_000068: ncbigene

position:68:1
position: 68
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1024:1
position: 1024
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:68-1024:1:exon

ND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 6941
gene: ND2
codon start: 1
transl table: 5
product: NADH dehydrogenase subunit 2
translation: MFFKKLMIWMITITVLISLSSNSWFIYWLMMEMNMMSFIPLMNNYKLKNLNAMITYFVVQAFSSSLFFLSAFQYNMMQIEFFLFLINISILIKLGMIPFHLWLISISEMMNFNSILILLTMQKIIPLLIAEKFMNNSLIPLFSMSTFFASFLAMKHKLMKKILIFSSISHQGWILCLLVKKLNFWIAYLMLYFIIFFNIISIFNKYKINFFSDFMKKKMKLEIKIKMIMLMMSLGGMPPFLGFFMKIVSIYLLMNLKLIFIFMLILSSLLNLFFYMRMIIPFFFINLKFFTWNNIFMNKNIYMNMNLIILIVLIYMYM
SIO_010081: ND2
subclass of: SO_0000673
so part of: ND2
location: 68..1024
location: region:68-1024:1
so has part: feature:68-1024:1:exon

YP_008999526.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:68-1024:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 6941
product: tRNA-Trp
anticodon: (pos:1057..1059,aa:Trp,seq:tca)
codon recognized: UGA
so part of: sequence
location: 1026..1089
location: region:1026-1089:1
so has part: feature:1026-1089:1:region

position:1026:1
position: 1026
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1089:1
position: 1089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1026-1089:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 6941
product: tRNA-Tyr
anticodon: (pos:complement(1121..1123),aa:Tyr,seq:gta)
codon recognized: UAC
so part of: sequence
location: complement(1091..1154)
location: region:1091-1154:-1
so has part: feature:1091-1154:-1:region

position:1091:-1
position: 1091
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1154:-1
position: 1154
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1091-1154:-1:region

COX1
type: Gene
subclass of: SO_0000704
RO_0002162: 6941
gene: COX1
so part of: sequence
location: 1147..2685
location: region:1147-2685:1
so has part: feature:1147-2685:1:exon
subclass of: SO_0000010

18250935
type: Gene
SIO_000068: ncbigene

position:1147:1
position: 1147
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2685:1
position: 2685
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1147-2685:1:exon

COX1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 6941
gene: COX1
codon start: 1
transl table: 5
product: cytochrome c oxidase subunit I
translation: MLPRWMYSTNHKDIGTMYLIFGAWAGMLGLSMSMLIRLELGQPGSLIGNDQIYNVIVTAHAFIMIFFMVMPIMIGGFGNWLVPIMLGAPDMAFPRMNNMSFWLLPPSLFLLINSSLVESGAGTGWTVYPPLSSNLSHYGPSVDLAIFSLHLAGASSILGAINFITTILNMRSIGMSMERMPLFVWSVLITAILLLLSLPVLAGAITMLLTDRNFNTSFFDPSGGGDPILYQHLFWFFGHPEVYILILPGFGMISQIICYNTGKKEPFGNLGMIYAMAAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAVPTGIKIFSWLATLHGSNIKFNASILWALGFVFLFTIGGLTGIMLANSSIDIILHDTYYVVAHFHYVLSMGAVFAIMGAIVHWFPMFFGMNLNSILTKSQFVITFLGVNLTFFPQHFLGLAGMPRRYSDYPDFFSKWNFLSSLGSLISLVGVIMLIIIIWLSIEEKKMINFSNFMNSSIEWMLNFPPSEHSFNQNNIIIK
SIO_010081: COX1
subclass of: SO_0000673
so part of: COX1
location: 1147..2685
location: region:1147-2685:1
so has part: feature:1147-2685:1:exon

YP_008999527.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1147-2685:1:exon

COX2
type: Gene
subclass of: SO_0000704
RO_0002162: 6941
gene: COX2
so part of: sequence
location: 2690..3362
location: region:2690-3362:1
so has part: feature:2690-3362:1:exon
subclass of: SO_0000010

18250936
type: Gene
SIO_000068: ncbigene

position:2690:1
position: 2690
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3362:1
position: 3362
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2690-3362:1:exon

COX2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 6941
gene: COX2
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:3362,aa:TERM)
transl table: 5
product: cytochrome c oxidase subunit II
translation: MMTWSQLAFSDMNSPIMEQMVFFHDYSMMIILIITIITIYMIINIMTNNFISRSLMEGQEIEIIWTIIPALTLIFIAIPSLYLLYLTDETFNNQISIKVLGHQWYWSYEYSDFNKEFDSFMIPESEMMKKTFRLLDTDNNLVLPINTNIKYLISSMDVIHSWTIPSLGLKMDAIPGRLNQSFSMSSRPGLFYGQCSEICGANHSFMPISLELTSMLNFIKFINS
SIO_010081: COX2
subclass of: SO_0000673
so part of: COX2
location: 2690..3362
location: region:2690-3362:1
so has part: feature:2690-3362:1:exon

YP_008999528.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2690-3362:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 6941
product: tRNA-Lys
anticodon: (pos:3392..3394,aa:Lys,seq:ctt)
codon recognized: AAG
so part of: sequence
location: 3363..3428
location: region:3363-3428:1
so has part: feature:3363-3428:1:region

position:3363:1
position: 3363
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3428:1
position: 3428
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3363-3428:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 6941
product: tRNA-Asp
anticodon: (pos:3461..3463,aa:Asp,seq:gtc)
codon recognized: GAC
so part of: sequence
location: 3428..3492
location: region:3428-3492:1
so has part: feature:3428-3492:1:region

position:3492:1
position: 3492
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3428-3492:1:region

ATP8
type: Gene
subclass of: SO_0000704
RO_0002162: 6941
gene: ATP8
so part of: sequence
location: 3494..3652
location: region:3494-3652:1
so has part: feature:3494-3652:1:exon
subclass of: SO_0000010

18250937
type: Gene
SIO_000068: ncbigene

position:3494:1
position: 3494
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3652:1
position: 3652
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3494-3652:1:exon

ATP8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 6941
gene: ATP8
codon start: 1
transl table: 5
product: ATP synthase F0 subunit 8
translation: MPQIFPMNWFILSLIIMLMIFLMTIHFYFLNLKNKNKMKYIQKMFYKFNYKF
SIO_010081: ATP8
subclass of: SO_0000673
so part of: ATP8
location: 3494..3652
location: region:3494-3652:1
so has part: feature:3494-3652:1:exon

YP_008999529.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3494-3652:1:exon

ATP6
type: Gene
subclass of: SO_0000704
RO_0002162: 6941
gene: ATP6
so part of: sequence
location: 3646..4317
location: region:3646-4317:1
so has part: feature:3646-4317:1:exon
subclass of: SO_0000010

18250938
type: Gene
SIO_000068: ncbigene

position:3646:1
position: 3646
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4317:1
position: 4317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3646-4317:1:exon

ATP6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 6941
gene: ATP6
codon start: 1
transl table: 5
product: ATP synthase F0 subunit 6
translation: MLMMNNLFSIFDPSTSQSFNFNWLSLVIWMFIIPQEFWASSSFFLISWKILSKKFFQEISNNMKLNKFKNCLFIFSIFFFIMESNFLGLIPYVFTSSSHLVFTMFFAFPFWMTFIFFSLINKFNMMMAHLVPLGSPMMLSFFMVIIETVSNLIRPITLSVRLAANMISGHLLIHLLSSITIFSKMLFLLTIPLMMTLLILETAVAFIQAFVFAILISLYINES
SIO_010081: ATP6
subclass of: SO_0000673
so part of: ATP6
location: 3646..4317
location: region:3646-4317:1
so has part: feature:3646-4317:1:exon

YP_008999530.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3646-4317:1:exon

COX3
type: Gene
subclass of: SO_0000704
RO_0002162: 6941
gene: COX3
so part of: sequence
location: 4326..5103
location: region:4326-5103:1
so has part: feature:4326-5103:1:exon
subclass of: SO_0000010

18250939
type: Gene
SIO_000068: ncbigene

position:4326:1
position: 4326
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5103:1
position: 5103
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4326-5103:1:exon

COX3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 6941
gene: COX3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:5103,aa:TERM)
transl table: 5
product: cytochrome c oxidase subunit III
translation: MMFHPFHLVEKSPWPLTSSISALSLTLGFVSFFQNLNFFLLMLSILMIFMSSFQWWRDISREGSFQGFHTYWVLNGLKMGMILFILSEIFFFISFFWAFFHSSLSPNIEIGGQWPPKNIFPFNPFEIPLLNSTILISSGITITWSHHSIMNKNYISTLNSLLITIILGVTFTMFQGFEYFQAQFSISDGIFGSTFFLTTGFHGIHVLIGSIFLLVSFFRIKKQLISSNHFFGFEASAWYWHFVDVVWLFLFTFMYWWIY
SIO_010081: COX3
subclass of: SO_0000673
so part of: COX3
location: 4326..5103
location: region:4326-5103:1
so has part: feature:4326-5103:1:exon

YP_008999531.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4326-5103:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 6941
product: tRNA-Gly
anticodon: (pos:5137..5139,aa:Gly,seq:tcc)
codon recognized: GGA
so part of: sequence
location: 5104..5168
location: region:5104-5168:1
so has part: feature:5104-5168:1:region

position:5104:1
position: 5104
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5168:1
position: 5168
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5104-5168:1:region

ND3
type: Gene
subclass of: SO_0000704
RO_0002162: 6941
gene: ND3
so part of: sequence
location: 5169..5510
location: region:5169-5510:1
so has part: feature:5169-5510:1:exon
subclass of: SO_0000010

18250940
type: Gene
SIO_000068: ncbigene

position:5169:1
position: 5169
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5510:1
position: 5510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5169-5510:1:exon

ND3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 6941
gene: ND3
codon start: 1
transl table: 5
product: NADH dehydrogenase subunit 3
translation: MLYLYITLTIIISLLLFLFFSLGFPGKKAKEKNSPFECGFDPFSLSRVPFSLKFFFIGIIFLIFDVEIVVILPFPLMMMMKNLHFTFYFFLINFMILLGLLYELNYSMLDWMK
SIO_010081: ND3
subclass of: SO_0000673
so part of: ND3
location: 5169..5510
location: region:5169-5510:1
so has part: feature:5169-5510:1:exon

YP_008999532.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5169-5510:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 6941
product: tRNA-Ala
anticodon: (pos:5546..5548,aa:Ala,seq:tgc)
codon recognized: GCA
so part of: sequence
location: 5514..5575
location: region:5514-5575:1
so has part: feature:5514-5575:1:region

position:5514:1
position: 5514
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5575:1
position: 5575
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5514-5575:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 6941
product: tRNA-Arg
anticodon: (pos:5607..5609,aa:Arg,seq:tcg)
codon recognized: CGA
so part of: sequence
location: 5576..5641
location: region:5576-5641:1
so has part: feature:5576-5641:1:region

position:5576:1
position: 5576
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5641:1
position: 5641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5576-5641:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 6941
product: tRNA-Asn
anticodon: (pos:5669..5671,aa:Asn,seq:gtt)
codon recognized: AAC
so part of: sequence
location: 5636..5700
location: region:5636-5700:1
so has part: feature:5636-5700:1:region

position:5636:1
position: 5636
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5700:1
position: 5700
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5636-5700:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 6941
product: tRNA-Ser
anticodon: (pos:5722..5724,aa:Ser,seq:tct)
codon recognized: AGA
so part of: sequence
location: 5703..5758
location: region:5703-5758:1
so has part: feature:5703-5758:1:region

position:5703:1
position: 5703
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5758:1
position: 5758
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5703-5758:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 6941
product: tRNA-Glu
anticodon: (pos:5793..5795,aa:Glu,seq:ttc)
codon recognized: GAA
so part of: sequence
location: 5759..5825
location: region:5759-5825:1
so has part: feature:5759-5825:1:region

position:5759:1
position: 5759
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5825:1
position: 5825
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5759-5825:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 6941
note: similar to NAD1
so part of: sequence
location: complement(5823..5879)
location: region:5823-5879:-1
so has part: feature:5823-5879:-1:region

position:5823:-1
position: 5823
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5879:-1
position: 5879
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5823-5879:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 6941
note: similar to tRNA-Glu
so part of: sequence
location: 5889..5955
location: region:5889-5955:1
so has part: feature:5889-5955:1:region

position:5889:1
position: 5889
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5955:1
position: 5955
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5889-5955:1:region

ND1
type: Gene
subclass of: SO_0000704
RO_0002162: 6941
gene: ND1
so part of: sequence
location: complement(5953..6891)
location: region:5953-6891:-1
so has part: feature:5953-6891:-1:exon
subclass of: SO_0000010

18250941
type: Gene
SIO_000068: ncbigene

position:5953:-1
position: 5953
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6891:-1
position: 6891
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5953-6891:-1:exon

ND1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 6941
gene: ND1
codon start: 1
transl table: 5
product: NADH dehydrogenase subunit 1
translation: MLNLIYFMMLILMVLLSIAFFTLMERKFLGYCHFRKGPNKTGILGLFQPFSDAIKLFSKEMNKMFYMNKNLQIIAPIFMIIMMIMMWMIFQFSNTALNLSMSIIFFLCISSLSSYSILFSGWASNSKYSLIGSYRGFAQVISYEVSMALILITMSIMPQSFNLFYFFKLQTYYPLIFSMFPVFIIWFISILAELNRVPFDLAEGESELVSGFNIEYGSWLFAIIFMSEYGNIMIISYLTNYLFLGFKNLSQFSILMIMFIIIMMRGTYVRMRYDQLMMMAWKIILPQSIILLFLIYFIFLNMFYFICINFCN
SIO_010081: ND1
subclass of: SO_0000673
so part of: ND1
location: complement(5953..6891)
location: region:5953-6891:-1
so has part: feature:5953-6891:-1:exon

YP_008999533.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5953-6891:-1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 6941
product: tRNA-Leu
anticodon: (pos:complement(6925..6927),aa:Leu,seq:taa)
codon recognized: UUA
so part of: sequence
location: complement(6892..6955)
location: region:6892-6955:-1
so has part: feature:6892-6955:-1:region

position:6892:-1
position: 6892
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6955:-1
position: 6955
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6892-6955:-1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 6941
product: l-rRNA
note: 16S ribosomal RNA
so part of: sequence
location: complement(6956..8161)
location: region:6956-8161:-1
so has part: feature:6956-8161:-1:region

position:6956:-1
position: 6956
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8161:-1
position: 8161
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6956-8161:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 6941
product: tRNA-Val
anticodon: (pos:complement(8192..8194),aa:Val,seq:tac)
codon recognized: GUA
so part of: sequence
location: complement(8162..8221)
location: region:8162-8221:-1
so has part: feature:8162-8221:-1:region

position:8162:-1
position: 8162
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8221:-1
position: 8221
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8162-8221:-1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 6941
product: s-rRNA
note: 12S ribosomal RNA
so part of: sequence
location: complement(8222..8919)
location: region:8222-8919:-1
so has part: feature:8222-8919:-1:region

position:8222:-1
position: 8222
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8919:-1
position: 8919
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8222-8919:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 6941
note: control region 1
so part of: sequence
location: 8920..9228
location: region:8920-9228:1
so has part: feature:8920-9228:1:region

position:8920:1
position: 8920
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9228:1
position: 9228
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8920-9228:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 6941
product: tRNA-Ile
anticodon: (pos:9257..9259,aa:Ile,seq:gat)
codon recognized: AUC
so part of: sequence
location: 9229..9293
location: region:9229-9293:1
so has part: feature:9229-9293:1:region

position:9229:1
position: 9229
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9293:1
position: 9293
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9229-9293:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 6941
product: tRNA-Gln
anticodon: (pos:complement(9340..9342),aa:Gln,seq:ttg)
codon recognized: CAA
so part of: sequence
location: complement(9305..9369)
location: region:9305-9369:-1
so has part: feature:9305-9369:-1:region

position:9305:-1
position: 9305
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9369:-1
position: 9369
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9305-9369:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 6941
product: tRNA-Phe
anticodon: (pos:complement(9420..9422),aa:Phe,seq:gaa)
codon recognized: UUC
so part of: sequence
location: complement(9380..9452)
location: region:9380-9452:-1
so has part: feature:9380-9452:-1:region

position:9380:-1
position: 9380
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9452:-1
position: 9452
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9380-9452:-1:region

ND5
type: Gene
subclass of: SO_0000704
RO_0002162: 6941
gene: ND5
so part of: sequence
location: complement(9454..11107)
location: region:9454-11107:-1
so has part: feature:9454-11107:-1:exon
subclass of: SO_0000010

18250942
type: Gene
SIO_000068: ncbigene

position:9454:-1
position: 9454
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11107:-1
position: 11107
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9454-11107:-1:exon

ND5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 6941
gene: ND5
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:complement(9454),aa:TERM)
transl table: 5
product: NADH dehydrogenase subunit 5
translation: MFINWTLMLLMFSMFFLVCLLFLLYNNSFIIIEYSLVTILSHEFKFYILLDWMSCMFSFIVLLISSMVLWYSFSYMMLDKNKMSFCWMVLFFILSMLLLILMPNMCMLILGWDGLGLVSYCLVIYYQSVNSYNSGMMTIISNRVGDVMIIMMIIFAINFNSFELVSFRKFELIWGLLIIIAAMTKSAQIPFSAWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNLLFNYSVFSSFLLKISLMTMVMAGINAFFENDLKKIIAFSTLSQLSIMMLTLALGLTSLSFFHLIVHAIFKSMLFLCAGFIIHNLMGNQDIRFLSNFFKFSPTILSCMIIGMLSLMGFPFIGGFYSKDIIMEFFFFKSQNMIEMILFIIGILFTFLYNMRLSYMILLKGTTNVSLLMNNLNVFMKYPILILSMKLIMMSNLMSWMIISNYSITFLSNQQKLMMMMMIFICIYVYNKSLSITYKFLMNMKFFMKMWYLNNLTSYILLSNNKRLLQMSINDWSWMEMMGPLGMKKMIMNNYNFSLIKKMNKFEIIFGMIFLMMFLFV
SIO_010081: ND5
subclass of: SO_0000673
so part of: ND5
location: complement(9454..11107)
location: region:9454-11107:-1
so has part: feature:9454-11107:-1:exon

YP_008999534.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9454-11107:-1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 6941
product: tRNA-His
anticodon: (pos:complement(11136..11138),aa:His,seq:gtg)
codon recognized: CAC
so part of: sequence
location: complement(11108..11169)
location: region:11108-11169:-1
so has part: feature:11108-11169:-1:region

position:11108:-1
position: 11108
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11169:-1
position: 11169
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11108-11169:-1:region

ND4
type: Gene
subclass of: SO_0000704
RO_0002162: 6941
gene: ND4
so part of: sequence
location: complement(11172..12485)
location: region:11172-12485:-1
so has part: feature:11172-12485:-1:exon
subclass of: SO_0000010

18250943
type: Gene
SIO_000068: ncbigene

position:11172:-1
position: 11172
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12485:-1
position: 12485
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11172-12485:-1:exon

ND4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 6941
gene: ND4
codon start: 1
transl table: 5
product: NADH dehydrogenase subunit 4
translation: MLMYMPMILILCFFIFMNSYQIMVYLMILMILLVLKGLMNNAEMIMNFFYFDLMSFSMISLTVWITFLMLMASRLNNLFQNKIFTFYILMMMNLLFFCFSFNNFMLFYLFFESVLFPIVLMIMGWGSQPERIQAGFYMLMYTIFGSLPLLVLMLTKSISFMIIYNEWLFSEMNWMFIMMIMGFLVKIPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGFYGLYRFKSFFFIDLINFSMIIIVISLWGAVMISIYCLFQIDIKSLIAYSSVSHMGIALSGCLTFYLYGSYGMLMMMIGHGLCSSGLFCLSNLIYERFYTRNIFMIKGMNLIFPNLTLWWFLFSIVNMSAPMTMNLFSELFLGLSVMKFSMLLMIPMMMLIFLSACYSMFMYSYINHGQSWMIFSSNMIFAREYYLLFLHLMPLMLWFMKFNFFMKWL
SIO_010081: ND4
subclass of: SO_0000673
so part of: ND4
location: complement(11172..12485)
location: region:11172-12485:-1
so has part: feature:11172-12485:-1:exon

YP_008999535.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11172-12485:-1:exon

ND4L
type: Gene
subclass of: SO_0000704
RO_0002162: 6941
gene: ND4L
so part of: sequence
location: complement(12479..12754)
location: region:12479-12754:-1
so has part: feature:12479-12754:-1:exon
subclass of: SO_0000010

18250944
type: Gene
SIO_000068: ncbigene

position:12479:-1
position: 12479
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12754:-1
position: 12754
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12479-12754:-1:exon

ND4L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 6941
gene: ND4L
codon start: 1
transl table: 5
product: NADH dehydrogenase subunit 4L
translation: MTFLVIVLYLMGIFIFFINRYYLMMILLSIEFIYMSLLLMLCIFFCMFNILGVFTFLISIVCEAGLGLSMLVMMSFYYGNEMMKMMTLIKC
SIO_010081: ND4L
subclass of: SO_0000673
so part of: ND4L
location: complement(12479..12754)
location: region:12479-12754:-1
so has part: feature:12479-12754:-1:exon

YP_008999536.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12479-12754:-1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 6941
product: tRNA-Thr
anticodon: (pos:12793..12795,aa:Thr,seq:tgt)
codon recognized: ACA
so part of: sequence
location: 12762..12822
location: region:12762-12822:1
so has part: feature:12762-12822:1:region

position:12762:1
position: 12762
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12822:1
position: 12822
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12762-12822:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 6941
product: tRNA-Pro
anticodon: (pos:complement(12852..12854),aa:Pro,seq:tgg)
codon recognized: CCA
so part of: sequence
location: complement(12823..12888)
location: region:12823-12888:-1
so has part: feature:12823-12888:-1:region

position:12823:-1
position: 12823
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12888:-1
position: 12888
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12823-12888:-1:region

ND6
type: Gene
subclass of: SO_0000704
RO_0002162: 6941
gene: ND6
so part of: sequence
location: 12876..13325
location: region:12876-13325:1
so has part: feature:12876-13325:1:exon
subclass of: SO_0000010

18250945
type: Gene
SIO_000068: ncbigene

position:12876:1
position: 12876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13325:1
position: 13325
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12876-13325:1:exon

ND6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 6941
gene: ND6
codon start: 1
transl table: 5
product: NADH dehydrogenase subunit 6
translation: MLFSEIKIVMFLSIICASVFHPVMMLLTLILLTLFLSMVFYYSYQFSIMSMMMILIILGGMLIIFMYMVSLCPNKKMKFNKKISVTFTFLLTLISYNMYMMKLDLVYINKIYLVNFVNMIIVMMIFLMLMLMIVAKNLNWINAPIKKFI
SIO_010081: ND6
subclass of: SO_0000673
so part of: ND6
location: 12876..13325
location: region:12876-13325:1
so has part: feature:12876-13325:1:exon

YP_008999537.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12876-13325:1:exon

CYTB
type: Gene
subclass of: SO_0000704
RO_0002162: 6941
gene: CYTB
so part of: sequence
location: 13330..14404
location: region:13330-14404:1
so has part: feature:13330-14404:1:exon
subclass of: SO_0000010

18250946
type: Gene
SIO_000068: ncbigene

position:13330:1
position: 13330
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14404:1
position: 14404
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13330-14404:1:exon

CYTB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 6941
gene: CYTB
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:14404,aa:TERM)
transl table: 5
product: cytochrome b
translation: MLKLMNPLINLPTPSNISFMWNFGSLLGICLFTQIMTGLFLAMNFSSDISTAFSMISHIQRDVNYGWLIRSIHANGASIFFIFMYIHVARGIYYSSFYFKKVWMSGIMIMFILMATAFLGYILPWGQMSFWGATVITNLISAIPYIGISITYWIWGGFSVDNNTLIRFFTLHFILPFMLLMLTMIHIMLIHEKGSSNPLGVTMNLDKIPFHPYFTIKDLLGIFLVIMMFSYLIIINPYKFMDAENFNIANPMITPPHIQPEWYFLFAYAILRSIPNKLGGVIALLMSIVIIISFSFSMKNKMSSFYFNIMFKIMFWLLINCFFLLTYLGAMPIEYPFDLMSKIVTILYFMIFIMIPLT
SIO_010081: CYTB
subclass of: SO_0000673
so part of: CYTB
location: 13330..14404
location: region:13330-14404:1
so has part: feature:13330-14404:1:exon

YP_008999538.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13330-14404:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 6941
product: tRNA-Ser
anticodon: (pos:14435..14437,aa:Ser,seq:tga)
codon recognized: UCA
so part of: sequence
location: 14405..14469
location: region:14405-14469:1
so has part: feature:14405-14469:1:region

position:14405:1
position: 14405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14469:1
position: 14469
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14405-14469:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 6941
product: tRNA-Leu
anticodon: (pos:complement(14506..14508),aa:Leu,seq:tag)
codon recognized: CUA
so part of: sequence
location: complement(14477..14538)
location: region:14477-14538:-1
so has part: feature:14477-14538:-1:region

position:14477:-1
position: 14477
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14538:-1
position: 14538
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14477-14538:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 6941
note: control region 2
so part of: sequence
location: 14539..14845
location: region:14539-14845:1
so has part: feature:14539-14845:1:region

position:14539:1
position: 14539
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14845:1
position: 14845
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14539-14845:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 6941
product: tRNA-Cys
note: no structure due to mutation
anticodon: (pos:14866..14868,aa:Cys,seq:gca)
codon recognized: UGC
so part of: sequence
location: 14846..14904
location: region:14846-14904:1
so has part: feature:14846-14904:1:region

position:14846:1
position: 14846
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14904:1
position: 14904
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14846-14904:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 6941
replace: c
so part of: sequence
location: 14864
location: region:14864-14864:1
so has part: feature:14864-14864:1:region

position:14864:1
position: 14864
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14864-14864:1:region