Deinococcus proteolyticus MRP plasmid pDEIPR01, complete sequence.
Bacteria; Deinococcota; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.
The complete sequence of plasmid1 of Deinococcus proteolyticus DSM 20540
Submitted (18-FEB-2011) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP002537.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4087341\nSource DNA and organism available from Hans-Peter Klenk at the\nGerman Collection of Microorganisms and Cell Cultures (DSMZ)\n(hans-peter.klenk@dsmz.de)\nContacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)\n David Bruce (microbe@cuba.jgi-psf.org)\nWhole genome sequencing and draft assembly at JGI-PGF\nFinishing done by JGI-LANL\nAnnotation by JGI-ORNL and JGI-PGF\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##MIGS-Data-START##\ninvestigation_type :: bacteria_archaea\nproject_name :: Deinococcus proteolyticus MRP, DSM 20540\ncollection_date :: Missing\nlat_lon :: Missing\ndepth :: Missing\nalt_elev :: Missing\ncountry :: Missing\nenvironment :: Soil\nnum_replicons :: 5\nref_biomaterial :: DSM 20540, ATCC 35074, CCM 2703\nbiotic_relationship :: Free living\ntrophic_level :: Missing\nrel_to_oxygen :: Aerobe\nisol_growth_condt :: Missing\nsequencing_meth :: WGS\nassembly :: Newbler v. 2.3 (pre-release)\nfinishing_strategy :: Finished\nGOLD Stamp ID :: Gi04185\nType Strain :: Yes\nFunding Program :: DOE-GEBA 2007\nGene Calling Method :: Prodigal 1.4, GenePRIMP\nIsolation Site :: Faeces of Lama glama\nIsolation Comments :: isolated by M. Kobatake MRP\nHost Name :: Lama glama\nCell Shape :: Coccus-shaped\nMotility :: Nonmotile\nTemperature Range :: Mesophile\nGram Staining :: Gram+\nPhenotypes :: Radiation resistant\n##MIGS-Data-END##\n\n##Genome-Assembly-Data-START##\nFinishing Goal :: Finished\nCurrent Finishing Status :: Finished\nAssembly Method :: Newbler v. 2.3\nGenome Coverage :: 30x\nSequencing Technology :: 454-Titanium, Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/02/2023 02:11:33\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,790\nCDSs (total) :: 2,732\nGenes (coding) :: 2,688\nCDSs (with protein) :: 2,688\nGenes (RNA) :: 58\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 3\nPseudo Genes (total) :: 44\nCDSs (without protein) :: 44\nPseudo Genes (ambiguous residues) :: 0 of 44\nPseudo Genes (frameshifted) :: 17 of 44\nPseudo Genes (incomplete) :: 28 of 44\nPseudo Genes (internal stop) :: 4 of 44\nPseudo Genes (multiple problems) :: 4 of 44\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Deinococcus proteolyticus
COORDINATES: similar to AA sequence:RefSeq:WP_019011911.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014695742.1
GO:0033232 - ABC-type D-methionine transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
GO:0048473 - D-methionine transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013622890.1
MetQ/NlpA family ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013622889.1
COORDINATES: similar to AA sequence:RefSeq:WP_017869754.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
LLM class flavin-dependent oxidoreductase
COORDINATES: protein motif:HMM:TIGR00254.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0005525 - GTP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013614164.1
COORDINATES: similar to AA sequence:RefSeq:WP_012695013.1
COORDINATES: similar to AA sequence:RefSeq:WP_010888855.1
COORDINATES: similar to AA sequence:RefSeq:WP_017871664.1
COORDINATES: similar to AA sequence:RefSeq:WP_010888631.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012955.2
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: protein motif:HMM:TIGR00180.1
ParB/RepB/Spo0J family partition protein
COORDINATES: protein motif:HMM:NF021637.2
COORDINATES: similar to AA sequence:RefSeq:WP_019588037.1
heterodisulfide reductase-related iron-sulfur binding cluster
COORDINATES: similar to AA sequence:RefSeq:WP_012693474.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]
FAD-linked oxidase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011529768.1
COORDINATES: similar to AA sequence:RefSeq:WP_019010318.1
COORDINATES: similar to AA sequence:RefSeq:WP_013176710.1
GO:0016787 - hydrolase activity [Evidence IEA]
isochorismatase family cysteine hydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_013623136.1
GO:0003333 - amino acid transmembrane transport [Evidence IEA]
aromatic amino acid transport family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010887214.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586184.1
GO:0042910 - xenobiotic transmembrane transporter activity [Evidence IEA]
GO:0006855 - xenobiotic transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013555432.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0019829 - ATPase-coupled monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017870256.1
COORDINATES: similar to AA sequence:RefSeq:WP_010889074.1
metal-sensitive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_005858714.1
GO:0003955 - NAD(P)H dehydrogenase (quinone) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019946908.1
GO:0004096 - catalase activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017869783.1
tyrosine-protein kinase domain-containing protein
COORDINATES: protein motif:HMM:NF024832.2
COORDINATES: protein motif:HMM:NF012744.2
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_013558100.1
COORDINATES: similar to AA sequence:RefSeq:WP_013558099.1
GO:0003824 - catalytic activity [Evidence IEA]
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012530057.1
GO:0008761 - UDP-N-acetylglucosamine 2-epimerase activity [Evidence IEA]
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)
COORDINATES: similar to AA sequence:RefSeq:WP_019406828.1
COORDINATES: protein motif:HMM:NF025054.2
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013227.2
DegT/DnrJ/EryC1/StrS family aminotransferase
COORDINATES: protein motif:HMM:NF024871.2
COORDINATES: similar to AA sequence:RefSeq:WP_011418490.1
DegT/DnrJ/EryC1/StrS aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012694155.1
GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
nucleoside-diphosphate sugar epimerase/dehydratase
COORDINATES: similar to AA sequence:RefSeq:WP_019011737.1
GO:0004844 - uracil DNA N-glycosylase activity [Evidence IEA]
GO:0006284 - base-excision repair [Evidence IEA]
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019009663.1
GO:0004519 - endonuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011531041.1
GO:0008902 - hydroxymethylpyrimidine kinase activity [Evidence IEA]; GO:0008972 - phosphomethylpyrimidine kinase activity [Evidence IEA]
GO:0009228 - thiamine biosynthetic process [Evidence IEA]
bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_013557353.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015234120.1
GO:1990107 - thiazole synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013557355.1
COORDINATES: similar to AA sequence:RefSeq:WP_015234122.1
GO:0004789 - thiamine-phosphate diphosphorylase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013557357.1
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00059
TPP riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_009603759.1
GO:0004635 - phosphoribosyl-AMP cyclohydrolase activity [Evidence IEA]; GO:0004636 - phosphoribosyl-ATP diphosphatase activity [Evidence IEA]
GO:0000105 - histidine biosynthetic process [Evidence IEA]
bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE
COORDINATES: similar to AA sequence:RefSeq:WP_013783420.1
GO:0000107 - imidazoleglycerol-phosphate synthase activity [Evidence IEA]
imidazole glycerol phosphate synthase subunit HisF
COORDINATES: similar to AA sequence:RefSeq:WP_014594060.1
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_008434273.1
GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]; GO:0000107 - imidazoleglycerol-phosphate synthase activity [Evidence IEA]
imidazole glycerol phosphate synthase subunit HisH
COORDINATES: similar to AA sequence:RefSeq:WP_013345220.1
GO:0004401 - histidinol-phosphatase activity [Evidence IEA]; GO:0004424 - imidazoleglycerol-phosphate dehydratase activity [Evidence IEA]
bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB
COORDINATES: similar to AA sequence:RefSeq:WP_007103452.1
GO:0004399 - histidinol dehydrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017220007.1
GO:0003879 - ATP phosphoribosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004582159.1
GO:0004585 - ornithine carbamoyltransferase activity [Evidence IEA]
GO:0042450 - arginine biosynthetic process via ornithine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010889392.1
GO:0019213 - deacetylase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014695578.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015236951.1
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007164964.1
GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017871573.1
GO:0006777 - Mo-molybdopterin cofactor biosynthetic process [Evidence IEA]
molybdopterin converting factor subunit 1
COORDINATES: similar to AA sequence:RefSeq:WP_011689973.1
GO:0015293 - symporter activity [Evidence IEA]
bile acid:sodium symporter family protein
COORDINATES: similar to AA sequence:RefSeq:WP_076612299.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013555707.1
GO:0005355 - glucose transmembrane transporter activity [Evidence IEA]
glucose-specific PTS transporter subunit IIBC
COORDINATES: similar to AA sequence:RefSeq:WP_013555706.1
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013489724.1
GO:0008965 - phosphoenolpyruvate-protein phosphotransferase activity [Evidence IEA]
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]; GO:0006808 - regulation of nitrogen utilization [Evidence IEA]
phosphoenolpyruvate--protein phosphotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_015236428.1
GO:0008448 - N-acetylglucosamine-6-phosphate deacetylase activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]
N-acetylglucosamine-6-phosphate deacetylase
COORDINATES: similar to AA sequence:RefSeq:WP_010889414.1
GO:0097367 - carbohydrate derivative binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019551370.1
acetyl-CoA hydrolase/transferase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF013871.2
COORDINATES: similar to AA sequence:RefSeq:WP_013615058.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013558294.1
COORDINATES: protein motif:HMM:NF016906.2
right-handed parallel beta-helix repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008488466.1
GO:0004834 - tryptophan synthase activity [Evidence IEA]
GO:0000162 - tryptophan biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015652391.1
COORDINATES: similar to AA sequence:RefSeq:WP_005275891.1
GO:0004425 - indole-3-glycerol-phosphate synthase activity [Evidence IEA]; GO:0004640 - phosphoribosylanthranilate isomerase activity [Evidence IEA]
GO:0006568 - tryptophan metabolic process [Evidence IEA]
bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF
COORDINATES: similar to AA sequence:RefSeq:WP_009408253.1
GO:0004048 - anthranilate phosphoribosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010188009.1
COORDINATES: similar to AA sequence:RefSeq:WP_018018367.1
GO:0004049 - anthranilate synthase activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019585596.1
bifunctional metallophosphatase/5'-nucleotidase
COORDINATES: similar to AA sequence:RefSeq:WP_012692987.1
COORDINATES: similar to AA sequence:RefSeq:WP_018218826.1
phosphatidylinositol-specific phospholipase C/glycerophosphodiester phosphodiesterase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011530033.1
COORDINATES: similar to AA sequence:RefSeq:WP_011530034.1
GO:0015093 - ferrous iron transmembrane transporter activity [Evidence IEA]
GO:0006826 - iron ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010887863.1
COORDINATES: similar to AA sequence:RefSeq:WP_007130210.1
GO:0009267 - cellular response to starvation [Evidence IEA]
COORDINATES: protein motif:HMM:NF015431.2
COORDINATES: similar to AA sequence:RefSeq:WP_010889507.1
COORDINATES: similar to AA sequence:RefSeq:WP_010889506.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014684067.1
GO:0004397 - histidine ammonia-lyase activity [Evidence IEA]
GO:0006548 - histidine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010889408.1
GO:0050480 - imidazolonepropionase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012693606.1
GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF016840.2
COORDINATES: similar to AA sequence:RefSeq:WP_017871474.1
GO:0016153 - urocanate hydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011525836.1
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF020337.2
COORDINATES: similar to AA sequence:RefSeq:WP_017869499.1
COORDINATES: similar to AA sequence:RefSeq:WP_017869500.1
COORDINATES: similar to AA sequence:RefSeq:WP_017870791.1
GO:0004729 - oxygen-dependent protoporphyrinogen oxidase activity [Evidence IEA]
GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010887774.1
GO:0004325 - ferrochelatase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_027479618.1
GO:0004853 - uroporphyrinogen decarboxylase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017871472.1
COORDINATES: protein motif:HMM:TIGR00157.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0043022 - ribosome binding [Evidence IEA]
ribosome small subunit-dependent GTPase A
COORDINATES: similar to AA sequence:RefSeq:WP_017870934.1
COORDINATES: similar to AA sequence:RefSeq:WP_017870097.1
COORDINATES: similar to AA sequence:RefSeq:WP_019008462.1
GO:0018817 - 2-oxo-hept-3-ene-1,7-dioate hydratase activity [Evidence IEA]
2-oxo-hepta-3-ene-1,7-dioic acid hydratase
COORDINATES: similar to AA sequence:RefSeq:WP_011062383.1
COORDINATES: similar to AA sequence:RefSeq:WP_011383244.1
HpcH/HpaI aldolase/citrate lyase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017871909.1
GO:0047617 - acyl-CoA hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019008851.1
3-oxoacyl-[acyl-carrier-protein] synthase III C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010889586.1
COORDINATES: similar to AA sequence:RefSeq:WP_019008853.1
COORDINATES: similar to AA sequence:RefSeq:WP_006501983.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004329 - formate-tetrahydrofolate ligase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014582337.1
GO:0032329 - serine transport [Evidence IEA]; GO:0015826 - threonine transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF024869.2
COORDINATES: similar to AA sequence:RefSeq:WP_011529896.1
GO:0070402 - NADPH binding [Evidence IEA]; GO:0003960 - NADPH:quinone reductase activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0048038 - quinone binding [Evidence IEA]
NADPH:quinone oxidoreductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011529364.1
COORDINATES: similar to AA sequence:RefSeq:WP_017869498.1
GO:0043546 - molybdopterin cofactor binding [Evidence IEA]
xanthine dehydrogenase family protein molybdopterin-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_007680742.1
xanthine dehydrogenase family protein subunit M
COORDINATES: similar to AA sequence:RefSeq:WP_010544707.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
2Fe-2S iron-sulfur cluster-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_017869098.1
GO:0009326 - formate dehydrogenase complex [Evidence IEA]
GO:0008863 - formate dehydrogenase (NAD+) activity [Evidence IEA]
GO:0015942 - formate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019009474.1
COORDINATES: similar to AA sequence:RefSeq:WP_019587863.1
GO:0016783 - sulfurtransferase activity [Evidence IEA]
formate dehydrogenase accessory sulfurtransferase FdhD
COORDINATES: protein motif:HMM:NF012311.2
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011526061.1
COORDINATES: similar to AA sequence:RefSeq:WP_019009308.1
COORDINATES: similar to AA sequence:RefSeq:WP_012919544.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_012692188.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0019829 - ATPase-coupled monoatomic cation transmembrane transporter activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0015662 - P-type ion transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013559.2
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024954.2
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014683594.1
COORDINATES: similar to AA sequence:RefSeq:WP_013614240.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612365.1
COORDINATES: similar to AA sequence:RefSeq:WP_013623029.1
COORDINATES: similar to AA sequence:RefSeq:WP_006035928.1
COORDINATES: similar to AA sequence:RefSeq:WP_017871335.1
COORDINATES: similar to AA sequence:RefSeq:WP_010887646.1
TetR family transcriptional regulator C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015236459.1
UDP-N-acetylmuramyl-tripeptide synthetase
COORDINATES: protein motif:HMM:NF025895.2
COORDINATES: similar to AA sequence:RefSeq:WP_019010689.1
GO:0016811 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides [Evidence IEA]
COORDINATES: protein motif:HMM:NF001299.0
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0000210 - NAD+ diphosphatase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012772.2
COORDINATES: similar to AA sequence:RefSeq:WP_019009472.1
COORDINATES: similar to AA sequence:RefSeq:WP_019009182.1
COORDINATES: similar to AA sequence:RefSeq:WP_015235548.1
GO:0009380 - excinuclease repair complex [Evidence IEA]
GO:0009381 - excinuclease ABC activity [Evidence IEA]
GO:0006289 - nucleotide-excision repair [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011531411.1
COORDINATES: protein motif:HMM:NF015531.2
COORDINATES: similar to AA sequence:RefSeq:WP_017461466.1
GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012700027.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013557685.1
GO:0003858 - 3-hydroxybutyrate dehydrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014695580.1
COORDINATES: similar to AA sequence:RefSeq:WP_017871904.1
COORDINATES: similar to AA sequence:RefSeq:WP_014695607.1
GO:0005971 - ribonucleoside-diphosphate reductase complex [Evidence IEA]
GO:0030145 - manganese ion binding [Evidence IEA]; GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
GO:0009265 - 2'-deoxyribonucleotide biosynthetic process [Evidence IEA]
class 1b ribonucleoside-diphosphate reductase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_019011866.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
class 1b ribonucleoside-diphosphate reductase subunit alpha
COORDINATES: protein motif:HMM:NF019584.2
GO:0036211 - protein modification process [Evidence IEA]
class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI
COORDINATES: similar to AA sequence:RefSeq:WP_010889415.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019011159.1
COORDINATES: similar to AA sequence:RefSeq:WP_019011160.1
GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008072935.1
GO:0043858 - arginine:ornithine antiporter activity [Evidence IEA]
GO:0006527 - arginine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015234867.1
COORDINATES: similar to AA sequence:RefSeq:WP_012695275.1
COORDINATES: similar to AA sequence:RefSeq:WP_010889400.1
COORDINATES: protein motif:HMM:NF012863.2
GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013557657.1
COORDINATES: similar to AA sequence:RefSeq:WP_012692391.1
serine hydrolase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010886723.1
COORDINATES: similar to AA sequence:RefSeq:WP_017870764.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014782125.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: protein motif:HMM:NF014871.2
GO:0009975 - cyclase activity [Evidence IEA]
GO:0009966 - regulation of signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012568836.1
COORDINATES: similar to AA sequence:RefSeq:WP_020040349.1
GO:0004350 - glutamate-5-semialdehyde dehydrogenase activity [Evidence IEA]; GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
GO:0006561 - proline biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017997893.1
GO:0004349 - glutamate 5-kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013178702.1
COORDINATES: similar to AA sequence:RefSeq:WP_013179105.1
COORDINATES: similar to AA sequence:RefSeq:WP_013176583.1
GO:0071949 - FAD binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024583.2
GO:0005515 - protein binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF016836.2
COORDINATES: protein motif:HMM:NF024950.2
COORDINATES: similar to AA sequence:RefSeq:WP_017870735.1
DeoR/GlpR family DNA-binding transcription regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011531292.1
COORDINATES: similar to AA sequence:RefSeq:WP_010884013.1
GO:0008662 - 1-phosphofructokinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012694218.1
GO:0022877 - protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity [Evidence IEA]
fructose-specific PTS transporter subunit EIIC
COORDINATES: similar to AA sequence:RefSeq:WP_010889390.1
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017869455.1
COORDINATES: similar to AA sequence:RefSeq:WP_013556620.1
COORDINATES: similar to AA sequence:RefSeq:WP_014695574.1
GO:0008767 - UDP-galactopyranose mutase activity [Evidence IEA]
GO:0009273 - peptidoglycan-based cell wall biogenesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019584987.1
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019010796.1
GO:0030429 - kynureninase activity [Evidence IEA]
GO:0019441 - tryptophan catabolic process to kynurenine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013556389.1
COORDINATES: similar to AA sequence:RefSeq:WP_019010795.1
GO:0004061 - arylformamidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014625.2
COORDINATES: similar to AA sequence:RefSeq:WP_019011992.1
GO:0004833 - tryptophan 2,3-dioxygenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017869441.1
GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO:0004024 - alcohol dehydrogenase activity, zinc-dependent [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010889266.1
COORDINATES: similar to AA sequence:RefSeq:WP_009331723.1
GO:0015297 - antiporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012694390.1
COORDINATES: similar to AA sequence:RefSeq:WP_007564680.1
COORDINATES: similar to AA sequence:RefSeq:WP_010889534.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013556400.1
GO:0008897 - holo-[acyl-carrier-protein] synthase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
4'-phosphopantetheinyl transferase superfamily protein
COORDINATES: similar to AA sequence:RefSeq:WP_018616716.1
GO:0004124 - cysteine synthase activity [Evidence IEA]
GO:0006535 - cysteine biosynthetic process from serine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018344259.1
GO:0009001 - serine O-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010888540.1
FadR/GntR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017869647.1
GO:0008028 - monocarboxylic acid transmembrane transporter activity [Evidence IEA]
GO:0015718 - monocarboxylic acid transport [Evidence IEA]
lactate permease LctP family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_014686681.1
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017869649.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
GO:0019516 - lactate oxidation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017869650.1
COORDINATES: similar to AA sequence:RefSeq:WP_012692195.1
COORDINATES: similar to AA sequence:RefSeq:WP_013558386.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014686287.1
COORDINATES: protein motif:HMM:NF012318.2
GO:0008233 - peptidase activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA]; GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014567.2
GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]
GO:0007165 - signal transduction [Evidence IEA]
histidine kinase dimerization/phospho-acceptor domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018784931.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_013556089.1
GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019010490.1
COORDINATES: similar to AA sequence:RefSeq:WP_013557122.1
GO:0015205 - nucleobase transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017871247.1
COORDINATES: protein motif:HMM:NF013382.2
GO:0008168 - methyltransferase activity [Evidence IEA]
methyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017870834.1
GO:0000156 - phosphorelay response regulator activity [Evidence IEA]
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: protein motif:HMM:NF013731.2
COORDINATES: protein motif:HMM:NF012245.2
COORDINATES: protein motif:HMM:NF025690.2
COORDINATES: protein motif:HMM:NF012301.2
COORDINATES: similar to AA sequence:RefSeq:WP_017822375.1
COORDINATES: similar to AA sequence:RefSeq:WP_013623129.1
GO:0004148 - dihydrolipoyl dehydrogenase activity [Evidence IEA]
GO:0045454 - cell redox homeostasis [Evidence IEA]; GO:0051068 - dihydrolipoamide metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014684624.1
COORDINATES: protein motif:HMM:NF017853.2
COORDINATES: similar to AA sequence:RefSeq:WP_019584979.1
alpha/beta fold hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012628275.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: nucleotide motif:Rfam:14.4:RF00162
SAM riboswitch class I; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_013178985.1
GO:0004489 - methylenetetrahydrofolate reductase (NAD(P)H) activity [Evidence IEA]
GO:0006555 - methionine metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012844921.1
GO:0031419 - cobalamin binding [Evidence IEA]; GO:0008705 - methionine synthase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0009086 - methionine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013622908.1
COORDINATES: similar to AA sequence:RefSeq:WP_012693462.1
COORDINATES: similar to AA sequence:RefSeq:WP_013557086.1
COORDINATES: similar to AA sequence:RefSeq:WP_013556961.1
COORDINATES: protein motif:HMM:NF014026.2
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
glycoside hydrolase family 3 C-terminal domain-containing protein