Caulobacter henricii strain CB4 plasmid pCB4, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.
Conservation of the essential genome among Caulobacter and Brevundimonas species
Submitted (20-OCT-2015) Biological Sciences, University of South Carolina, 715 Sumter St, Columbia, SC 29208, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP013003.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 2.0\nGenome Coverage :: 55x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/05/2023 19:35:23\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,791\nCDSs (total) :: 3,732\nGenes (coding) :: 3,677\nCDSs (with protein) :: 3,677\nGenes (RNA) :: 59\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 3\nPseudo Genes (total) :: 55\nCDSs (without protein) :: 55\nPseudo Genes (ambiguous residues) :: 0 of 55\nPseudo Genes (frameshifted) :: 27 of 55\nPseudo Genes (incomplete) :: 38 of 55\nPseudo Genes (internal stop) :: 4 of 55\nPseudo Genes (multiple problems) :: 11 of 55\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF014677.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012520484.1
COORDINATES: similar to AA sequence:RefSeq:WP_003170461.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006878 - cellular copper ion homeostasis [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
Cu(I)-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012286339.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012286340.1
COORDINATES: similar to AA sequence:RefSeq:WP_012286345.1
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_012286346.1
COORDINATES: similar to AA sequence:RefSeq:WP_012286347.1
COORDINATES: protein motif:HMM:NF015658.2
COORDINATES: similar to AA sequence:RefSeq:WP_012286352.1
COORDINATES: similar to AA sequence:RefSeq:WP_013481263.1
COORDINATES: similar to AA sequence:RefSeq:WP_012286357.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012286358.1
COORDINATES: similar to AA sequence:RefSeq:WP_007662272.1
COORDINATES: similar to AA sequence:RefSeq:WP_007662270.1
COORDINATES: similar to AA sequence:RefSeq:WP_007662268.1
GO:0006825 - copper ion transport [Evidence IEA]
copper homeostasis membrane protein CopD
COORDINATES: similar to AA sequence:RefSeq:WP_007662266.1
GO:0042597 - periplasmic space [Evidence IEA]
GO:0005507 - copper ion binding [Evidence IEA]
copper homeostasis periplasmic binding protein CopC
COORDINATES: similar to AA sequence:RefSeq:WP_012521992.1
COORDINATES: similar to AA sequence:RefSeq:WP_012286382.1
COORDINATES: similar to AA sequence:RefSeq:WP_007662262.1
COORDINATES: similar to AA sequence:RefSeq:WP_012286384.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0005375 - copper ion transmembrane transporter activity [Evidence IEA]
copper resistance system multicopper oxidase
COORDINATES: similar to AA sequence:RefSeq:WP_012286385.1
COORDINATES: similar to AA sequence:RefSeq:WP_017503388.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF025056.2
toll/interleukin-1 receptor domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009658158.1
COORDINATES: similar to AA sequence:RefSeq:WP_005861229.1
COORDINATES: protein motif:HMM:NF025107.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017313943.1
COORDINATES: similar to AA sequence:RefSeq:WP_018391626.1
COORDINATES: protein motif:HMM:NF020811.2
COORDINATES: similar to AA sequence:RefSeq:WP_007880509.1
COORDINATES: similar to AA sequence:RefSeq:WP_007672404.1
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: protein motif:HMM:NF021637.2
COORDINATES: similar to AA sequence:RefSeq:WP_013039071.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012520251.1
COORDINATES: similar to AA sequence:RefSeq:WP_012520252.1
COORDINATES: similar to AA sequence:RefSeq:WP_014072616.1
VirB4 family type IV secretion/conjugal transfer ATPase
COORDINATES: similar to AA sequence:RefSeq:WP_012520254.1
GO:0043684 - type IV secretion system complex [Evidence IEA]
COORDINATES: protein motif:HMM:NF033894.1
COORDINATES: similar to AA sequence:RefSeq:WP_012520255.1
COORDINATES: similar to AA sequence:RefSeq:WP_007683406.1
COORDINATES: similar to AA sequence:RefSeq:WP_012520256.1
COORDINATES: similar to AA sequence:RefSeq:WP_012520257.1
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_010188963.1
COORDINATES: similar to AA sequence:RefSeq:WP_003170556.1
GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011950753.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: protein motif:HMM:NF037421.2
COORDINATES: similar to AA sequence:RefSeq:WP_007390016.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017505559.1
COORDINATES: similar to AA sequence:RefSeq:WP_017505560.1
MobC family plasmid mobilization relaxosome protein
COORDINATES: protein motif:HMM:NF024803.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_010188950.1
COORDINATES: similar to AA sequence:RefSeq:WP_003170539.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: protein motif:HMM:NF014273.2
COORDINATES: protein motif:HMM:NF024013.2
COORDINATES: similar to AA sequence:RefSeq:WP_076612037.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018061667.1
COORDINATES: similar to AA sequence:RefSeq:WP_012286332.1
COORDINATES: similar to AA sequence:RefSeq:WP_012286333.1
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012286334.1
GO:0033573 - high-affinity iron permease complex [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO:0005381 - iron ion transmembrane transporter activity [Evidence IEA]
GO:0034755 - iron ion transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012286316.1
COORDINATES: similar to AA sequence:RefSeq:WP_012286317.1
COORDINATES: similar to AA sequence:RefSeq:WP_012286318.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
CusA/CzcA family heavy metal efflux RND transporter
COORDINATES: similar to AA sequence:RefSeq:WP_010405550.1
COORDINATES: similar to AA sequence:RefSeq:WP_012520481.1
COORDINATES: similar to AA sequence:RefSeq:WP_012286321.1
COORDINATES: similar to AA sequence:RefSeq:YP_002518184.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF022072.2
COORDINATES: similar to AA sequence:RefSeq:WP_012286324.1
COORDINATES: similar to AA sequence:RefSeq:WP_012286326.1
COORDINATES: similar to AA sequence:RefSeq:YP_002518180.1
COORDINATES: similar to AA sequence:RefSeq:WP_010920569.1
COORDINATES: similar to AA sequence:RefSeq:WP_012520496.1
COORDINATES: protein motif:HMM:NF013695.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR01297.1
cation diffusion facilitator family transporter