Cupriavidus basilensis strain DSM 11853 plasmid pRK1-4, complete sequence.
Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.
Complete genome sequence of Cupriavidus basilensis CCUG 49340T
Submitted (06-OCT-2020) Infectious Diseases, University of Gothenburg - CCUG, Guldhedsgatan 10, Box 7193, Gothenburg, Vastra Gotaland 40234, Sweden
Submitted (05-SEP-2019) Infectious Diseases, University of Gothenburg - CCUG, Guldhedsgatan 10, Box 7193, Gothenburg, Vastra Gotaland 40234, Sweden
REFSEQ INFORMATION: The reference sequence is identical to\nCP062808.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 21-SEP-2020\nAssembly Method :: Unicycler v. v0.4.7; Canu v. 1.5\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 633.0x\nSequencing Technology :: Oxford Nanopore MinION; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/05/2023 05:40:10\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 8,196\nCDSs (total) :: 8,104\nGenes (coding) :: 7,897\nCDSs (with protein) :: 7,897\nGenes (RNA) :: 92\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 67\nncRNAs :: 4\nPseudo Genes (total) :: 207\nCDSs (without protein) :: 207\nPseudo Genes (ambiguous residues) :: 0 of 207\nPseudo Genes (frameshifted) :: 74 of 207\nPseudo Genes (incomplete) :: 157 of 207\nPseudo Genes (internal stop) :: 27 of 207\nPseudo Genes (multiple problems) :: 46 of 207\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Sediment of a freshwater pond enriched in a fixed-bed reactor with 2,6-dichlorophenol as sole carbon and energy source
COORDINATES: similar to AA sequence:RefSeq:WP_004637268.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004637284.1
COORDINATES: similar to AA sequence:RefSeq:WP_011798658.1
COORDINATES: similar to AA sequence:RefSeq:WP_004637279.1
COORDINATES: similar to AA sequence:RefSeq:WP_011798656.1
GO:0003886 - DNA (cytosine-5-)-methyltransferase activity [Evidence IEA]; GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013723328.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242156.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242153.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242152.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242151.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242150.1
COORDINATES: similar to AA sequence:RefSeq:WP_004636925.1
COORDINATES: similar to AA sequence:RefSeq:WP_011798648.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242059.1
COORDINATES: similar to AA sequence:RefSeq:WP_013723336.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242061.1
COORDINATES: similar to AA sequence:RefSeq:WP_013723338.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242063.1
COORDINATES: similar to AA sequence:RefSeq:WP_013723340.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242065.1
COORDINATES: similar to AA sequence:RefSeq:WP_011798640.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009242067.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242069.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242070.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242071.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009242072.1
protein-disulfide reductase DsbD N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013723310.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242074.1
COORDINATES: similar to AA sequence:RefSeq:WP_011798634.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242076.1
COORDINATES: similar to AA sequence:RefSeq:WP_013723311.1
COORDINATES: similar to AA sequence:RefSeq:WP_013436694.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013723312.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009242080.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242081.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242082.1
type IV conjugative transfer system protein TraL
COORDINATES: similar to AA sequence:RefSeq:WP_009242083.1
type IV conjugative transfer system protein TraE
COORDINATES: similar to AA sequence:RefSeq:WP_009242085.1
type-F conjugative transfer system secretin TraK
COORDINATES: similar to AA sequence:RefSeq:WP_009242086.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242087.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242088.1
type IV conjugative transfer system lipoprotein TraV
COORDINATES: similar to AA sequence:RefSeq:WP_013723313.1
COORDINATES: similar to AA sequence:RefSeq:WP_011798629.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242091.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242092.1
type-F conjugative transfer system protein TraW
COORDINATES: similar to AA sequence:RefSeq:WP_006029210.1
conjugal transfer pilus assembly protein TraU
COORDINATES: similar to AA sequence:RefSeq:WP_009242094.1
type-F conjugative transfer system pilin assembly protein TrbC
COORDINATES: similar to AA sequence:RefSeq:WP_011798628.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242096.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242097.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_009242098.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242099.1
COORDINATES: similar to AA sequence:RefSeq:WP_011798627.1
conjugal transfer protein TraG N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013436717.1
COORDINATES: similar to AA sequence:RefSeq:WP_013723315.1
COORDINATES: similar to AA sequence:RefSeq:WP_009277741.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242138.1
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009242137.1
COORDINATES: similar to AA sequence:RefSeq:WP_011798686.1
COORDINATES: similar to AA sequence:RefSeq:WP_011798685.1
COORDINATES: similar to AA sequence:RefSeq:WP_086558039.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003121561.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242134.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242133.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242132.1
COORDINATES: similar to AA sequence:RefSeq:WP_011798681.1
COORDINATES: similar to AA sequence:RefSeq:WP_011798680.1
COORDINATES: similar to AA sequence:RefSeq:WP_011798679.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242128.1
COORDINATES: similar to AA sequence:RefSeq:WP_011798677.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242126.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242125.1
GO:0030261 - chromosome condensation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011798675.1
GO:0042834 - peptidoglycan binding [Evidence IEA]; GO:0015288 - porin activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011798674.1
COORDINATES: protein motif:HMM:NF019976.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
nuclease-related domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_086558171.1
COORDINATES: similar to AA sequence:RefSeq:WP_011034173.1
GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019460598.1
COORDINATES: similar to AA sequence:RefSeq:WP_012702119.1
relaxase/mobilization nuclease and DUF3363 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006473308.1
COORDINATES: similar to AA sequence:RefSeq:WP_006379345.1
COORDINATES: similar to AA sequence:RefSeq:WP_006379346.1
COORDINATES: similar to AA sequence:RefSeq:WP_011241722.1
COORDINATES: similar to AA sequence:RefSeq:WP_009523272.1
COORDINATES: similar to AA sequence:RefSeq:WP_013973047.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013723320.1
COORDINATES: similar to AA sequence:RefSeq:WP_013723321.1
COORDINATES: similar to AA sequence:RefSeq:WP_013723322.1
GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013723323.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242148.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242147.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242146.1
COORDINATES: similar to AA sequence:RefSeq:WP_011798667.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242144.1
COORDINATES: similar to AA sequence:RefSeq:WP_011798665.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_004637276.1
COORDINATES: similar to AA sequence:RefSeq:WP_011798663.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_004637272.1
putative addiction module antidote protein