Cupriavidus basilensis strain DSM 11853 plasmid pRK1-2, complete sequence.
Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.
Complete genome sequence of Cupriavidus basilensis CCUG 49340T
Submitted (06-OCT-2020) Infectious Diseases, University of Gothenburg - CCUG, Guldhedsgatan 10, Box 7193, Gothenburg, Vastra Gotaland 40234, Sweden
Submitted (05-SEP-2019) Infectious Diseases, University of Gothenburg - CCUG, Guldhedsgatan 10, Box 7193, Gothenburg, Vastra Gotaland 40234, Sweden
REFSEQ INFORMATION: The reference sequence is identical to\nCP062806.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 21-SEP-2020\nAssembly Method :: Unicycler v. v0.4.7; Canu v. 1.5\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 633.0x\nSequencing Technology :: Oxford Nanopore MinION; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/05/2023 05:40:10\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 8,196\nCDSs (total) :: 8,104\nGenes (coding) :: 7,897\nCDSs (with protein) :: 7,897\nGenes (RNA) :: 92\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 67\nncRNAs :: 4\nPseudo Genes (total) :: 207\nCDSs (without protein) :: 207\nPseudo Genes (ambiguous residues) :: 0 of 207\nPseudo Genes (frameshifted) :: 74 of 207\nPseudo Genes (incomplete) :: 157 of 207\nPseudo Genes (internal stop) :: 27 of 207\nPseudo Genes (multiple problems) :: 46 of 207\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Sediment of a freshwater pond enriched in a fixed-bed reactor with 2,6-dichlorophenol as sole carbon and energy source
COORDINATES: similar to AA sequence:RefSeq:WP_011514775.1
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_016359334.1
COORDINATES: similar to AA sequence:RefSeq:WP_013595220.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012363.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017348393.1
hydantoinase/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007675660.1
hydantoinase B/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008923604.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_010296329.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020202516.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006462165.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016836083.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013956785.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF015431.2
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010812735.1
COORDINATES: similar to AA sequence:RefSeq:WP_006159731.1
COORDINATES: similar to AA sequence:RefSeq:WP_004973543.1
GO:0004803 - transposase activity [Evidence IEA]
RNA-guided endonuclease TnpB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011800685.1
COORDINATES: protein motif:HMM:NF015366.2
GO:0042597 - periplasmic space [Evidence IEA]
tripartite tricarboxylate transporter substrate binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011615118.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011615117.1
COORDINATES: similar to AA sequence:RefSeq:WP_011615116.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011615115.1
COORDINATES: protein motif:HMM:NF040570.1
COORDINATES: similar to AA sequence:RefSeq:WP_011258802.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
LysR substrate-binding domain-containing protein
COORDINATES: protein motif:HMM:NF012955.2
COORDINATES: similar to AA sequence:RefSeq:WP_001131385.1
COORDINATES: protein motif:HMM:NF014708.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611314.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024242.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014900228.1
sigma-54-dependent Fis family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014900229.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011533988.1
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003450002.1
COORDINATES: similar to AA sequence:RefSeq:WP_014087281.1
COORDINATES: similar to AA sequence:RefSeq:WP_019437498.1
GO:0030058 - amine dehydrogenase activity [Evidence IEA]
GO:0009310 - amine catabolic process [Evidence IEA]
quinohemoprotein amine dehydrogenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_008145337.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
GO:0043687 - post-translational protein modification [Evidence IEA]
quinohemoprotein amine dehydrogenase maturation protein
COORDINATES: similar to AA sequence:RefSeq:WP_020193816.1
quinohemoprotein amine dehydrogenase subunit gamma
COORDINATES: similar to AA sequence:RefSeq:WP_014900222.1
quinohemoprotein amine dehydrogenase subunit beta
COORDINATES: protein motif:HMM:NF013753.2
COORDINATES: similar to AA sequence:RefSeq:WP_013104584.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019366250.1
COORDINATES: similar to AA sequence:RefSeq:WP_002620637.1
COORDINATES: similar to AA sequence:RefSeq:WP_007829148.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611899.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612008.1
GO:0015074 - DNA integration [Evidence IEA]
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005261619.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076612070.1
COORDINATES: similar to AA sequence:RefSeq:WP_006822784.1
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018309608.1
COORDINATES: similar to AA sequence:RefSeq:WP_015931497.1
COORDINATES: similar to AA sequence:RefSeq:WP_003658257.1
COORDINATES: protein motif:HMM:NF019604.2
COORDINATES: similar to AA sequence:RefSeq:WP_007970700.1
class II aldolase/adducin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007735945.1
COORDINATES: similar to AA sequence:RefSeq:WP_012333249.1
GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008347863.1
COORDINATES: protein motif:HMM:NF012699.2
GO:0006629 - lipid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015670014.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611261.1
COORDINATES: protein motif:HMM:NF028169.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
TetR/AcrR family transcriptional regulator
COORDINATES: protein motif:HMM:NF024810.2
COORDINATES: similar to AA sequence:RefSeq:WP_019447901.1
COORDINATES: similar to AA sequence:RefSeq:WP_006164514.1
COORDINATES: similar to AA sequence:RefSeq:WP_006164513.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354863.1
H-NS family nucleoid-associated regulatory protein
COORDINATES: similar to AA sequence:RefSeq:WP_003261481.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_006402798.1
COORDINATES: similar to AA sequence:RefSeq:WP_018003838.1
COORDINATES: similar to AA sequence:RefSeq:WP_017898974.1
COORDINATES: similar to AA sequence:RefSeq:WP_006164512.1
COORDINATES: similar to AA sequence:RefSeq:WP_013721785.1
GO:0003953 - NAD+ nucleosidase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO:0007165 - signal transduction [Evidence IEA]
toll/interleukin-1 receptor domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019043436.1
COORDINATES: similar to AA sequence:RefSeq:WP_020819956.1
COORDINATES: similar to AA sequence:RefSeq:WP_013698483.1
COORDINATES: similar to AA sequence:RefSeq:WP_011805823.1
nucleoside triphosphate pyrophosphohydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013698481.1
COORDINATES: protein motif:HMM:NF037286.2
COORDINATES: similar to AA sequence:RefSeq:WP_017825977.1
COORDINATES: protein motif:HMM:NF036730.2
COORDINATES: similar to AA sequence:RefSeq:WP_011911219.1
COORDINATES: similar to AA sequence:RefSeq:WP_013959215.1
COORDINATES: similar to AA sequence:RefSeq:WP_013959156.1
COORDINATES: protein motif:HMM:NF036878.2
COORDINATES: similar to AA sequence:RefSeq:WP_011852028.1
COORDINATES: similar to AA sequence:RefSeq:WP_020749479.1
COORDINATES: similar to AA sequence:RefSeq:WP_013959269.1
COORDINATES: similar to AA sequence:RefSeq:WP_013959268.1
type II toxin-antitoxin system VapB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_017940309.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
reverse transcriptase domain-containing protein
COORDINATES: protein motif:HMM:NF023168.2
COORDINATES: similar to AA sequence:RefSeq:WP_018312614.1
COORDINATES: similar to AA sequence:RefSeq:WP_003126469.1
COORDINATES: similar to AA sequence:RefSeq:WP_011297673.1
COORDINATES: similar to AA sequence:RefSeq:WP_013958755.1
GO:0008410 - CoA-transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013958754.1
COORDINATES: similar to AA sequence:RefSeq:WP_003126460.1
COORDINATES: similar to AA sequence:RefSeq:WP_005015538.1
COORDINATES: similar to AA sequence:RefSeq:WP_003801221.1
GO:0016159 - muconolactone delta-isomerase activity [Evidence IEA]
GO:0042952 - beta-ketoadipate pathway [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012354594.1
COORDINATES: protein motif:HMM:NF013544.2
COORDINATES: protein motif:HMM:NF018933.2
COORDINATES: similar to AA sequence:RefSeq:WP_014340596.1
COORDINATES: protein motif:HMM:NF012707.2
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011154060.1
COORDINATES: similar to AA sequence:RefSeq:WP_012492354.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003424637.1
COORDINATES: protein motif:HMM:NF012398.2
COORDINATES: similar to AA sequence:RefSeq:WP_006226635.1
catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013212544.1
COORDINATES: similar to AA sequence:RefSeq:WP_013092478.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0000976 - transcription cis-regulatory region binding [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]; GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LacI family DNA-binding transcriptional regulator
COORDINATES: protein motif:HMM:NF013431.2
COORDINATES: similar to AA sequence:RefSeq:WP_003202529.1
COORDINATES: protein motif:HMM:NF024950.2
COORDINATES: similar to AA sequence:RefSeq:WP_004713727.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
sugar ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011815457.1
COORDINATES: similar to AA sequence:RefSeq:WP_020541723.1
GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002209280.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
COORDINATES: protein motif:HMM:NF024996.2
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0015288 - porin activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014753193.1
HpcH/HpaI aldolase/citrate lyase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_002629542.1
COORDINATES: similar to AA sequence:RefSeq:WP_018433108.1
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
SMP-30/gluconolactonase/LRE family protein
COORDINATES: protein motif:HMM:NF017263.2
GO:0016829 - lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012285000.1
COORDINATES: similar to AA sequence:RefSeq:WP_018913828.1
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: similar to AA sequence:RefSeq:WP_006157778.1
COORDINATES: similar to AA sequence:RefSeq:WP_009574800.1
GO:0016702 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen [Evidence IEA]
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: similar to AA sequence:RefSeq:WP_003052137.1
COORDINATES: protein motif:HMM:NF024854.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
MarR family winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_003052933.1
COORDINATES: similar to AA sequence:RefSeq:WP_003052141.1
COORDINATES: similar to AA sequence:RefSeq:WP_012353535.1
COORDINATES: similar to AA sequence:RefSeq:WP_006157775.1
class I adenylate-forming enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003039949.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016703 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) [Evidence IEA]
COORDINATES: protein motif:HMM:NF013777.2
winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_020819244.1
GO:0003985 - acetyl-CoA C-acetyltransferase activity [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003052147.1
COORDINATES: similar to AA sequence:RefSeq:WP_019043573.1
COORDINATES: similar to AA sequence:RefSeq:WP_006160237.1
COORDINATES: similar to AA sequence:RefSeq:WP_011615348.1
COORDINATES: similar to AA sequence:RefSeq:WP_013959444.1
COORDINATES: protein motif:HMM:NF013122.2
GO:0004527 - exonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF037405.2
COORDINATES: similar to AA sequence:RefSeq:WP_013338290.1
COORDINATES: similar to AA sequence:RefSeq:WP_020203556.1
COORDINATES: similar to AA sequence:RefSeq:WP_006158141.1
GO:0016407 - acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018312560.1
GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018003845.1
COORDINATES: similar to AA sequence:RefSeq:WP_006576337.1
GO:0045027 - DNA end binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006158042.1
COORDINATES: similar to AA sequence:RefSeq:WP_006161207.1
GO:0047470 - (1,4)-alpha-D-glucan 1-alpha-D-glucosylmutase activity [Evidence IEA]
GO:0005992 - trehalose biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011300350.1
GO:0004134 - 4-alpha-glucanotransferase activity [Evidence IEA]
GO:0005980 - glycogen catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019451814.1
GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]
malto-oligosyltrehalose trehalohydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_006159924.1
GO:0004133 - glycogen debranching enzyme activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006159923.1
GO:0003844 - 1,4-alpha-glucan branching enzyme activity [Evidence IEA]; GO:0043169 - cation binding [Evidence IEA]; GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO:0005978 - glycogen biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006159922.1
GO:0016866 - intramolecular transferase activity [Evidence IEA]
GO:0000023 - maltose metabolic process [Evidence IEA]; GO:0005991 - trehalose metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006159921.1
alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_006577504.1
type 1 glutamine amidotransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019580961.1
COORDINATES: similar to AA sequence:RefSeq:WP_006578788.1
COORDINATES: similar to AA sequence:RefSeq:WP_008243522.1
GO:0004096 - catalase activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009523520.1
COORDINATES: similar to AA sequence:RefSeq:WP_018417767.1
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019700285.1
COORDINATES: similar to AA sequence:RefSeq:WP_018005536.1
low affinity iron permease family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006482240.1
COORDINATES: similar to AA sequence:RefSeq:WP_006156625.1
COORDINATES: similar to AA sequence:RefSeq:WP_018308825.1
COORDINATES: similar to AA sequence:RefSeq:WP_006156619.1
COORDINATES: similar to AA sequence:RefSeq:WP_018005539.1
GO:0042314 - bacteriochlorophyll binding [Evidence IEA]
GO:0019684 - photosynthesis, light reaction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018434944.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011617798.1
ParB/Srx family N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018007229.1
COORDINATES: similar to AA sequence:RefSeq:WP_006481268.1
COORDINATES: similar to AA sequence:RefSeq:WP_006161209.1
COORDINATES: protein motif:HMM:NF025352.2
COORDINATES: similar to AA sequence:RefSeq:WP_007734268.1
GO:0001216 - DNA-binding transcription activator activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011350067.1
COORDINATES: similar to AA sequence:RefSeq:WP_011061894.1
COORDINATES: similar to AA sequence:RefSeq:WP_004882038.1
COORDINATES: similar to AA sequence:RefSeq:WP_009239860.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0009410 - response to xenobiotic stimulus [Evidence IEA]; GO:0006855 - xenobiotic transmembrane transport [Evidence IEA]
DHA2 family efflux MFS transporter permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_006162705.1
GO:0003824 - catalytic activity [Evidence IEA]
enoyl-CoA hydratase/isomerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012404160.1
COORDINATES: protein motif:HMM:NF013429.2
COORDINATES: similar to AA sequence:RefSeq:WP_006162706.1
COORDINATES: similar to AA sequence:RefSeq:WP_020555536.1
COORDINATES: similar to AA sequence:RefSeq:WP_012404156.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012404155.1
COORDINATES: similar to AA sequence:RefSeq:WP_006159373.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0010181 - FMN binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006159372.1
COORDINATES: similar to AA sequence:RefSeq:WP_006159371.1
COORDINATES: protein motif:HMM:NF027681.2
COORDINATES: similar to AA sequence:RefSeq:WP_018698638.1
COORDINATES: similar to AA sequence:RefSeq:WP_006296728.1
COORDINATES: protein motif:HMM:NF014684.2
GO:0015803 - branched-chain amino acid transport [Evidence IEA]
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_011300130.1
COORDINATES: protein motif:HMM:NF024825.2
COORDINATES: protein motif:HMM:NF014820.2
COORDINATES: protein motif:HMM:NF012596.2
COORDINATES: protein motif:HMM:NF012928.2
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]
3-hydroxyacyl-CoA dehydrogenase family protein
COORDINATES: protein motif:HMM:TIGR00369.1
GO:0047617 - acyl-CoA hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014252891.1
COORDINATES: similar to AA sequence:RefSeq:WP_006958407.1
zinc-binding alcohol dehydrogenase family protein
tripartite tricarboxylate transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011295755.1
COORDINATES: similar to AA sequence:RefSeq:WP_018609953.1
NAD(P)-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005770293.1
COORDINATES: similar to AA sequence:RefSeq:WP_011518586.1
COORDINATES: similar to AA sequence:RefSeq:WP_017330408.1
COORDINATES: similar to AA sequence:RefSeq:WP_009769887.1
COORDINATES: similar to AA sequence:RefSeq:WP_009769888.1
COORDINATES: similar to AA sequence:RefSeq:WP_013209627.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013956687.1
GO:0009190 - cyclic nucleotide biosynthetic process [Evidence IEA]; GO:0035556 - intracellular signal transduction [Evidence IEA]
adenylate/guanylate cyclase domain-containing protein
COORDINATES: protein motif:HMM:NF012655.2
COORDINATES: protein motif:HMM:NF016777.2
COORDINATES: similar to AA sequence:RefSeq:WP_011299135.1
COORDINATES: protein motif:HMM:TIGR00976.1
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006159359.1
COORDINATES: similar to AA sequence:RefSeq:WP_013533091.1
COORDINATES: similar to AA sequence:RefSeq:WP_012345868.1
COORDINATES: similar to AA sequence:RefSeq:WP_012218382.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006156583.1
COORDINATES: similar to AA sequence:RefSeq:WP_006324289.1
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007967126.1
COORDINATES: similar to AA sequence:RefSeq:WP_011298065.1
COORDINATES: similar to AA sequence:RefSeq:WP_003080084.1
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF040071.1
COORDINATES: similar to AA sequence:RefSeq:WP_019451286.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432046.1
COORDINATES: similar to AA sequence:RefSeq:WP_008333201.1
COORDINATES: similar to AA sequence:RefSeq:WP_018954958.1
GO:0004039 - allophanate hydrolase activity [Evidence IEA]
GO:0019627 - urea metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011300997.1
GO:0004847 - urea carboxylase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011285842.1
urea carboxylase-associated family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011300999.1
COORDINATES: similar to AA sequence:RefSeq:WP_011811490.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011301001.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011301002.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00442
guanidine-I (ykkC/yxkD leader) riboswitch; Guanidine-I riboswitches control genes whose products are involved in modification or pumping out guanidine as a toxic compound from bacteria; This is class of guanidine riboswitches is based on the ykkC/yxkD leader; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_006163268.1
COORDINATES: similar to AA sequence:RefSeq:WP_006163267.1
COORDINATES: similar to AA sequence:RefSeq:WP_011798054.1
COORDINATES: similar to AA sequence:RefSeq:WP_012435763.1
COORDINATES: similar to AA sequence:RefSeq:WP_018309870.1
GO:0030261 - chromosome condensation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008641081.1
COORDINATES: similar to AA sequence:RefSeq:WP_013234390.1
COORDINATES: similar to AA sequence:RefSeq:WP_012234045.1
COORDINATES: similar to AA sequence:RefSeq:WP_003056169.1
COORDINATES: protein motif:HMM:NF024949.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_000749342.1
COORDINATES: protein motif:HMM:NF014643.2
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_011517827.1
GO:0015627 - type II protein secretion system complex [Evidence IEA]
GO:0015628 - protein secretion by the type II secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014615836.1
COORDINATES: similar to AA sequence:RefSeq:WP_006477248.1
type II secretion system inner membrane protein GspF
COORDINATES: protein motif:HMM:NF013395.2
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018310195.1
type II secretion system major pseudopilin GspG
COORDINATES: protein motif:HMM:TIGR01708.2
type II secretion system minor pseudopilin GspH
COORDINATES: similar to AA sequence:RefSeq:WP_013958286.1
type II secretion system minor pseudopilin GspI
COORDINATES: protein motif:HMM:TIGR02532.1
prepilin-type N-terminal cleavage/methylation domain-containing protein
COORDINATES: protein motif:HMM:TIGR01709.2
COORDINATES: protein motif:HMM:NF016493.2
COORDINATES: similar to AA sequence:RefSeq:WP_007180068.1
lytic transglycosylase domain-containing protein
COORDINATES: protein motif:HMM:NF037980.1
GO:0009306 - protein secretion [Evidence IEA]
type II secretion system minor pseudopilin GspK
COORDINATES: protein motif:HMM:NF024257.2
COORDINATES: protein motif:HMM:TIGR02937.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_011441106.1
filamentous haemagglutinin family protein
COORDINATES: protein motif:HMM:NF016648.2
COORDINATES: similar to AA sequence:RefSeq:WP_006384896.1
GO:0016987 - sigma factor activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024503.2
TonB C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF020036.2
COORDINATES: protein motif:HMM:TIGR00229.1
COORDINATES: similar to AA sequence:RefSeq:WP_014193188.1
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014193187.1
COORDINATES: similar to AA sequence:RefSeq:WP_008649234.1
GO:0004497 - monooxygenase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01217.1
GO:0030729 - acetoacetate-CoA ligase activity [Evidence IEA]
GO:0019287 - isopentenyl diphosphate biosynthetic process, mevalonate pathway [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012367162.1
TraM recognition domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012354578.1
COORDINATES: similar to AA sequence:RefSeq:WP_012435615.1
COORDINATES: similar to AA sequence:RefSeq:WP_008649471.1
COORDINATES: similar to AA sequence:RefSeq:WP_012435611.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]