Cupriavidus basilensis strain DSM 11853 plasmid pRK1-1, complete sequence.
Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.
Complete genome sequence of Cupriavidus basilensis CCUG 49340T
Submitted (06-OCT-2020) Infectious Diseases, University of Gothenburg - CCUG, Guldhedsgatan 10, Box 7193, Gothenburg, Vastra Gotaland 40234, Sweden
Submitted (05-SEP-2019) Infectious Diseases, University of Gothenburg - CCUG, Guldhedsgatan 10, Box 7193, Gothenburg, Vastra Gotaland 40234, Sweden
REFSEQ INFORMATION: The reference sequence is identical to\nCP062805.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 21-SEP-2020\nAssembly Method :: Unicycler v. v0.4.7; Canu v. 1.5\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 633.0x\nSequencing Technology :: Oxford Nanopore MinION; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/05/2023 05:40:10\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 8,196\nCDSs (total) :: 8,104\nGenes (coding) :: 7,897\nCDSs (with protein) :: 7,897\nGenes (RNA) :: 92\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 67\nncRNAs :: 4\nPseudo Genes (total) :: 207\nCDSs (without protein) :: 207\nPseudo Genes (ambiguous residues) :: 0 of 207\nPseudo Genes (frameshifted) :: 74 of 207\nPseudo Genes (incomplete) :: 157 of 207\nPseudo Genes (internal stop) :: 27 of 207\nPseudo Genes (multiple problems) :: 46 of 207\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Sediment of a freshwater pond enriched in a fixed-bed reactor with 2,6-dichlorophenol as sole carbon and energy source
COORDINATES: protein motif:HMM:NF025107.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix domain-containing protein
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_018310260.1
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007182612.1
COORDINATES: similar to AA sequence:RefSeq:WP_020071131.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_019449783.1
COORDINATES: similar to AA sequence:RefSeq:WP_012356645.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012356644.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004521 - endoribonuclease activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: protein motif:HMM:NF024637.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF017437.2
COORDINATES: similar to AA sequence:RefSeq:WP_003088846.1
COORDINATES: similar to AA sequence:RefSeq:WP_003088838.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012428248.1
LacI family DNA-binding transcriptional regulator
COORDINATES: protein motif:HMM:NF015366.2
tripartite tricarboxylate transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_003261205.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018312815.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003813976.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011614308.1
GO:0042597 - periplasmic space [Evidence IEA]
tripartite tricarboxylate transporter substrate binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011766578.1
COORDINATES: similar to AA sequence:RefSeq:WP_013397123.1
CaiB/BaiF CoA-transferase family protein
COORDINATES: protein motif:HMM:NF012596.2
GO:0003824 - catalytic activity [Evidence IEA]
enoyl-CoA hydratase/isomerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003058245.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011463943.1
COORDINATES: similar to AA sequence:RefSeq:WP_011295755.1
COORDINATES: similar to AA sequence:RefSeq:WP_016909072.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0009055 - electron transfer activity [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012296.2
GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017136472.1
E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pyruvate dehydrogenase (acetyl-transferring), homodimeric type
COORDINATES: similar to AA sequence:RefSeq:WP_006325379.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018008243.1
COORDINATES: similar to AA sequence:RefSeq:WP_011483399.1
COORDINATES: similar to AA sequence:RefSeq:WP_018312603.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018907532.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011462930.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]
FAD-linked oxidase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009553145.1
GO:0071949 - FAD binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016453628.1
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009398858.1
COORDINATES: protein motif:HMM:NF024212.2
COORDINATES: similar to AA sequence:RefSeq:WP_003806915.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: protein motif:HMM:NF019604.2
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012891473.1
COORDINATES: similar to AA sequence:RefSeq:WP_005465044.1
COORDINATES: protein motif:HMM:NF019310.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002713042.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]
GMC family oxidoreductase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011356578.1
COORDINATES: similar to AA sequence:RefSeq:WP_012493021.1
GO:0006629 - lipid metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF025607.2
COORDINATES: similar to AA sequence:RefSeq:WP_011798239.1
COORDINATES: protein motif:HMM:NF017528.2
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: protein motif:HMM:NF013677.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018004415.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011942232.1
COORDINATES: similar to AA sequence:RefSeq:WP_006164514.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013959656.1
COORDINATES: similar to AA sequence:RefSeq:WP_008344523.1
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012406686.1
COORDINATES: similar to AA sequence:RefSeq:WP_012406685.1
COORDINATES: similar to AA sequence:RefSeq:WP_012428289.1
COORDINATES: similar to AA sequence:RefSeq:WP_012428288.1
COORDINATES: similar to AA sequence:RefSeq:WP_007182655.1
COORDINATES: similar to AA sequence:RefSeq:WP_018444254.1
COORDINATES: protein motif:HMM:NF018259.2
COORDINATES: similar to AA sequence:RefSeq:WP_009242110.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242109.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009242108.1
GO:0070403 - NAD+ binding [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013596210.1
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
GO:0019619 - 3,4-dihydroxybenzoate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009242107.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0004174 - electron-transferring-flavoprotein dehydrogenase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0022900 - electron transport chain [Evidence IEA]
electron transfer flavoprotein-ubiquinone oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_013519739.1
COORDINATES: similar to AA sequence:RefSeq:WP_018313042.1
COORDINATES: similar to AA sequence:RefSeq:WP_014745004.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007814709.1
COORDINATES: protein motif:HMM:NF024950.2
COORDINATES: similar to AA sequence:RefSeq:WP_015016244.1
indolepyruvate ferredoxin oxidoreductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006576582.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0015658 - branched-chain amino acid transmembrane transporter activity [Evidence IEA]; GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0015803 - branched-chain amino acid transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
branched-chain amino acid ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_004523160.1
high-affinity branched-chain amino acid ABC transporter permease LivH
COORDINATES: similar to AA sequence:RefSeq:WP_010089869.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0015658 - branched-chain amino acid transmembrane transporter activity [Evidence IEA]
high-affinity branched-chain amino acid ABC transporter permease LivM
COORDINATES: similar to AA sequence:RefSeq:WP_013957419.1
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG
COORDINATES: similar to AA sequence:RefSeq:WP_006161614.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004627649.1
GO:0004084 - branched-chain-amino-acid transaminase activity [Evidence IEA]
GO:0009081 - branched-chain amino acid metabolic process [Evidence IEA]
branched-chain amino acid aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_009462767.1
COORDINATES: similar to AA sequence:RefSeq:WP_014235165.1
GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018313057.1
GO:0070402 - NADPH binding [Evidence IEA]; GO:0003960 - NADPH:quinone reductase activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0048038 - quinone binding [Evidence IEA]
NADPH:quinone oxidoreductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004649095.1
COORDINATES: similar to AA sequence:RefSeq:WP_006385449.1
GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IEA]; GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0071949 - FAD binding [Evidence IEA]; GO:0010181 - FMN binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0033543 - fatty acid beta-oxidation, unsaturated, even number, reductase/isomerase pathway [Evidence IEA]
NADPH-dependent 2,4-dienoyl-CoA reductase
COORDINATES: similar to AA sequence:RefSeq:WP_018313045.1
COORDINATES: similar to AA sequence:RefSeq:WP_003815607.1
COORDINATES: similar to AA sequence:RefSeq:WP_018439637.1
COORDINATES: similar to AA sequence:RefSeq:WP_018439636.1
COORDINATES: similar to AA sequence:RefSeq:WP_011829552.1
GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004363267.1
GO:0010124 - phenylacetate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007865103.1
COORDINATES: similar to AA sequence:RefSeq:WP_003059510.1
GO:0008746 - NAD(P)+ transhydrogenase activity [Evidence IEA]
GO:1902600 - proton transmembrane transport [Evidence IEA]
Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_010464279.1
GO:0008750 - NAD(P)+ transhydrogenase (AB-specific) activity [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]
Re/Si-specific NAD(P)(+) transhydrogenase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_012558606.1
COORDINATES: similar to AA sequence:RefSeq:WP_020043160.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
PLP-dependent aminotransferase family protein
COORDINATES: protein motif:HMM:NF014795.2
GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008652479.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012206113.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018313051.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011296013.1
COORDINATES: similar to AA sequence:RefSeq:WP_018315273.1
COORDINATES: similar to AA sequence:RefSeq:WP_004628588.1
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_013952153.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
GO:0015803 - branched-chain amino acid transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009521998.1
COORDINATES: similar to AA sequence:RefSeq:WP_006410443.1
COORDINATES: similar to AA sequence:RefSeq:WP_012248233.1
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]
3-hydroxyacyl-CoA dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006399050.1
COORDINATES: similar to AA sequence:RefSeq:WP_006410444.1
COORDINATES: similar to AA sequence:RefSeq:WP_018313062.1
COORDINATES: similar to AA sequence:RefSeq:WP_006399047.1
COORDINATES: similar to AA sequence:RefSeq:WP_018313064.1
class I adenylate-forming enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018313065.1
COORDINATES: similar to AA sequence:RefSeq:WP_011494151.1
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006399043.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0008134 - transcription factor binding [Evidence IEA]
sigma 54-interacting transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009156250.1
COORDINATES: similar to AA sequence:RefSeq:WP_008920485.1
GO:0003855 - 3-dehydroquinate dehydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005881846.1
COORDINATES: similar to AA sequence:RefSeq:WP_004522988.1
COORDINATES: similar to AA sequence:RefSeq:WP_020566071.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018309100.1
GO:0015293 - symporter activity [Evidence IEA]
GO:0006847 - plasma membrane acetate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018309101.1
COORDINATES: similar to AA sequence:RefSeq:WP_018309102.1
COORDINATES: similar to AA sequence:RefSeq:WP_018309103.1
COORDINATES: similar to AA sequence:RefSeq:WP_019402265.1
COORDINATES: similar to AA sequence:RefSeq:WP_019198545.1
COORDINATES: similar to AA sequence:RefSeq:WP_003811518.1
COORDINATES: similar to AA sequence:RefSeq:WP_010926631.1
COORDINATES: similar to AA sequence:RefSeq:WP_012248182.1
COORDINATES: similar to AA sequence:RefSeq:WP_009632030.1
COORDINATES: similar to AA sequence:RefSeq:WP_014631919.1
COORDINATES: similar to AA sequence:RefSeq:WP_012217715.1
GO:0016020 - membrane [Evidence IEA]; GO:1902495 - transmembrane transporter complex [Evidence IEA]
GO:0006865 - amino acid transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018309104.1
COORDINATES: similar to AA sequence:RefSeq:WP_018309105.1
GO:0001216 - DNA-binding transcription activator activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009620001.1
class II aldolase/adducin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012043253.1
COORDINATES: similar to AA sequence:RefSeq:WP_017847595.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011004204.1
COORDINATES: similar to AA sequence:RefSeq:WP_011914811.1
COORDINATES: similar to AA sequence:RefSeq:WP_011520006.1
GO:0004096 - catalase activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020800044.1
ankyrin repeat domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014631931.1
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_016781050.1
COORDINATES: similar to AA sequence:RefSeq:WP_017338317.1
COORDINATES: similar to AA sequence:RefSeq:WP_013202856.1
COORDINATES: similar to AA sequence:RefSeq:WP_012248174.1
COORDINATES: similar to AA sequence:RefSeq:WP_014631927.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012511308.1
GO:0008150 - biological_process [Evidence IEA]
TIGR03571 family LLM class oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_007739414.1
COORDINATES: similar to AA sequence:RefSeq:WP_011487793.1
GO:0003839 - gamma-glutamylcyclotransferase activity [Evidence IEA]
GO:0006751 - glutathione catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011827996.1
sigma-54-dependent Fis family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013894446.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007297069.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011465008.1
GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012838030.1
COORDINATES: similar to AA sequence:RefSeq:WP_011297825.1
COORDINATES: similar to AA sequence:RefSeq:WP_013958704.1
GO:0050498 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, with 2-oxoglutarate as one donor, and the other dehydrogenated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012355199.1
COORDINATES: similar to AA sequence:RefSeq:WP_011000070.1
COORDINATES: similar to AA sequence:RefSeq:WP_017335414.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076612204.1
COORDINATES: similar to AA sequence:RefSeq:WP_006156191.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0015288 - porin activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013963090.1
xanthine dehydrogenase family protein subunit M
COORDINATES: similar to AA sequence:RefSeq:WP_012642580.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013674393.1
xanthine dehydrogenase family protein molybdopterin-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012975864.1
COORDINATES: similar to AA sequence:RefSeq:WP_011296179.1
COORDINATES: similar to AA sequence:RefSeq:WP_018419802.1
COORDINATES: similar to AA sequence:RefSeq:WP_015451947.1
COORDINATES: similar to AA sequence:RefSeq:WP_010242539.1
COORDINATES: similar to AA sequence:RefSeq:WP_018420203.1
COORDINATES: similar to AA sequence:RefSeq:WP_018309608.1
COORDINATES: protein motif:HMM:NF033517.1
COORDINATES: similar to AA sequence:RefSeq:WP_018309605.1
COORDINATES: similar to AA sequence:RefSeq:WP_006410439.1
COORDINATES: similar to AA sequence:RefSeq:WP_018313058.1
GO:0008410 - CoA-transferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015431.2
COORDINATES: similar to AA sequence:RefSeq:WP_013956687.1
GO:0009190 - cyclic nucleotide biosynthetic process [Evidence IEA]; GO:0035556 - intracellular signal transduction [Evidence IEA]
adenylate/guanylate cyclase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016723108.1
COORDINATES: similar to AA sequence:RefSeq:WP_020831451.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004819 - glutamine-tRNA ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006425 - glutaminyl-tRNA aminoacylation [Evidence IEA]
glutamine--tRNA ligase/YqeY domain fusion protein
COORDINATES: similar to AA sequence:RefSeq:WP_012432662.1
GO:0004148 - dihydrolipoyl dehydrogenase activity [Evidence IEA]
GO:0045454 - cell redox homeostasis [Evidence IEA]; GO:0051068 - dihydrolipoamide metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012584.2
Catalyzes the oxidation of dihydrolipoamide to lipoamide; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013688998.1
COORDINATES: similar to AA sequence:RefSeq:WP_018314360.1
COORDINATES: similar to AA sequence:RefSeq:WP_011615307.1
COORDINATES: similar to AA sequence:RefSeq:WP_012427364.1
COORDINATES: similar to AA sequence:RefSeq:WP_006162677.1
COORDINATES: similar to AA sequence:RefSeq:WP_009522048.1
COORDINATES: similar to AA sequence:RefSeq:WP_011004209.1
GO:0006351 - DNA-templated transcription [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013209947.1
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019656403.1
GO:0006749 - glutathione metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013317245.1
GO:0005515 - protein binding [Evidence IEA]
glutathione-dependent disulfide-bond oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_020186237.1
COORDINATES: similar to AA sequence:RefSeq:WP_018313068.1
Lrp/AsnC ligand binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008646483.1
COORDINATES: similar to AA sequence:RefSeq:WP_008924770.1
COORDINATES: similar to AA sequence:RefSeq:WP_014631384.1
GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018315286.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009541963.1
COORDINATES: similar to AA sequence:RefSeq:WP_006757738.1
COORDINATES: similar to AA sequence:RefSeq:WP_018315284.1
COORDINATES: similar to AA sequence:RefSeq:WP_006163205.1
COORDINATES: similar to AA sequence:RefSeq:WP_012248168.1
COORDINATES: similar to AA sequence:RefSeq:WP_010812738.1
COORDINATES: protein motif:HMM:NF014430.2
COORDINATES: similar to AA sequence:RefSeq:WP_013956785.1
COORDINATES: similar to AA sequence:RefSeq:WP_011297772.1
COORDINATES: similar to AA sequence:RefSeq:WP_013093735.1
COORDINATES: similar to AA sequence:RefSeq:WP_005014546.1
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: protein motif:HMM:NF023178.2
COORDINATES: similar to AA sequence:RefSeq:WP_012354446.1
COORDINATES: similar to AA sequence:RefSeq:WP_006163466.1
COORDINATES: similar to AA sequence:RefSeq:WP_018313452.1
COORDINATES: similar to AA sequence:RefSeq:WP_013954255.1
COORDINATES: similar to AA sequence:RefSeq:WP_013954256.1
COORDINATES: similar to AA sequence:RefSeq:WP_013954257.1
COORDINATES: similar to AA sequence:RefSeq:WP_013954258.1
COORDINATES: similar to AA sequence:RefSeq:WP_018311473.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354860.1
H-NS family nucleoid-associated regulatory protein
COORDINATES: similar to AA sequence:RefSeq:WP_018314114.1
COORDINATES: similar to AA sequence:RefSeq:WP_006999995.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003274572.1
COORDINATES: similar to AA sequence:RefSeq:WP_003274571.1
COORDINATES: protein motif:HMM:NF024703.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
GO:0006139 - nucleobase-containing compound metabolic process [Evidence IEA]
helicase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018309603.1
COORDINATES: protein motif:HMM:NF014442.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005153251.1
COORDINATES: similar to AA sequence:RefSeq:WP_008037541.1
COORDINATES: protein motif:HMM:NF027613.2
GO:0004540 - ribonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_086558218.1
COORDINATES: nucleotide motif:Rfam:14.4:RF01497
AL1L pseudoknot; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_015472110.1
COORDINATES: similar to AA sequence:RefSeq:WP_013587326.1
COORDINATES: similar to AA sequence:RefSeq:WP_015004218.1
GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]; GO:0001072 - transcription antitermination factor activity, RNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019447797.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010811174.1
COORDINATES: similar to AA sequence:RefSeq:WP_018312151.1
COORDINATES: similar to AA sequence:RefSeq:WP_011295783.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354764.1
COORDINATES: similar to AA sequence:RefSeq:WP_013954363.1
COORDINATES: similar to AA sequence:RefSeq:WP_018006585.1
GO:0045027 - DNA end binding [Evidence IEA]
GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013954365.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094623.1
COORDINATES: similar to AA sequence:RefSeq:WP_011301843.1
COORDINATES: similar to AA sequence:RefSeq:WP_006297671.1
COORDINATES: similar to AA sequence:RefSeq:WP_006156210.1
COORDINATES: similar to AA sequence:RefSeq:WP_009858723.1
COORDINATES: similar to AA sequence:RefSeq:WP_012886007.1
GO:0009436 - glyoxylate catabolic process [Evidence IEA]; GO:0071704 - organic substance metabolic process [Evidence IEA]
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015452160.1
COORDINATES: similar to AA sequence:RefSeq:WP_013956762.1
GO:0016831 - carboxy-lyase activity [Evidence IEA]
GO:0015940 - pantothenate biosynthetic process [Evidence IEA]
putative pyridoxal-dependent aspartate 1-decarboxylase
COORDINATES: similar to AA sequence:RefSeq:WP_007996824.1
COORDINATES: similar to AA sequence:RefSeq:WP_007996819.1
COORDINATES: similar to AA sequence:RefSeq:WP_003247584.1
COORDINATES: similar to AA sequence:RefSeq:WP_013954366.1
GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO:0018142 - protein-DNA covalent cross-linking [Evidence IEA]
SOS response-associated peptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013954367.1
COORDINATES: similar to AA sequence:RefSeq:WP_013954368.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354475.1
COORDINATES: similar to AA sequence:RefSeq:WP_013954370.1
GO:0051782 - negative regulation of cell division [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
translesion DNA synthesis-associated protein ImuA
COORDINATES: similar to AA sequence:RefSeq:WP_019726659.1
COORDINATES: similar to AA sequence:RefSeq:WP_012218041.1
COORDINATES: similar to AA sequence:RefSeq:WP_013105396.1
toxin-antitoxin system HicB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_010147308.1
COORDINATES: similar to AA sequence:RefSeq:WP_004630095.1
COORDINATES: similar to AA sequence:RefSeq:WP_013954372.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354509.1
COORDINATES: protein motif:HMM:NF021471.2
COORDINATES: similar to AA sequence:RefSeq:WP_006575393.1
COORDINATES: similar to AA sequence:RefSeq:WP_011295924.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012367411.1
COORDINATES: similar to AA sequence:RefSeq:WP_013691843.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354512.1
GO:0030261 - chromosome condensation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017362353.1
COORDINATES: protein motif:HMM:NF040044.1
COORDINATES: similar to AA sequence:RefSeq:WP_004630525.1
COORDINATES: similar to AA sequence:RefSeq:WP_011875924.1
COORDINATES: similar to AA sequence:RefSeq:WP_019407019.1
COORDINATES: similar to AA sequence:RefSeq:WP_013206063.1
COORDINATES: similar to AA sequence:RefSeq:WP_015026521.1
COORDINATES: similar to AA sequence:RefSeq:WP_018309874.1
COORDINATES: similar to AA sequence:RefSeq:WP_011514882.1
COORDINATES: similar to AA sequence:RefSeq:WP_008645365.1
COORDINATES: similar to AA sequence:RefSeq:WP_018003801.1
COORDINATES: similar to AA sequence:RefSeq:WP_012435710.1
COORDINATES: similar to AA sequence:RefSeq:WP_012435703.1
COORDINATES: similar to AA sequence:RefSeq:WP_006757264.1
COORDINATES: similar to AA sequence:RefSeq:WP_013700032.1
COORDINATES: similar to AA sequence:RefSeq:WP_018004035.1
COORDINATES: similar to AA sequence:RefSeq:WP_018004036.1
COORDINATES: similar to AA sequence:RefSeq:WP_013954391.1
COORDINATES: similar to AA sequence:RefSeq:WP_013954392.1
COORDINATES: similar to AA sequence:RefSeq:WP_018004040.1
COORDINATES: similar to AA sequence:RefSeq:WP_011239949.1
GO:0019867 - outer membrane [Evidence IEA]
glycine zipper 2TM domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008645390.1
COORDINATES: similar to AA sequence:RefSeq:WP_018004043.1
COORDINATES: similar to AA sequence:RefSeq:WP_011239945.1
COORDINATES: similar to AA sequence:RefSeq:WP_011239944.1
COORDINATES: similar to AA sequence:RefSeq:WP_008645396.1
COORDINATES: similar to AA sequence:RefSeq:WP_018004048.1
COORDINATES: similar to AA sequence:RefSeq:WP_018004049.1
COORDINATES: similar to AA sequence:RefSeq:WP_013954436.1
COORDINATES: similar to AA sequence:RefSeq:WP_008645404.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0140658 - ATP-dependent chromatin remodeler activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012354522.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354524.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354526.1
COORDINATES: similar to AA sequence:RefSeq:WP_020201349.1
COORDINATES: similar to AA sequence:RefSeq:WP_011239938.1
COORDINATES: protein motif:HMM:NF018381.2
COORDINATES: similar to AA sequence:RefSeq:WP_018315510.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354532.1
COORDINATES: similar to AA sequence:RefSeq:WP_018315513.1
COORDINATES: similar to AA sequence:RefSeq:WP_008648655.1
COORDINATES: similar to AA sequence:RefSeq:WP_008645425.1
COORDINATES: similar to AA sequence:RefSeq:WP_018315518.1
COORDINATES: similar to AA sequence:RefSeq:WP_018315520.1
COORDINATES: similar to AA sequence:RefSeq:WP_007181179.1
GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA]
GO:0000373 - Group II intron splicing [Evidence IEA]
group II intron reverse transcriptase/maturase
COORDINATES: protein motif:HMM:NF036442.2
COORDINATES: similar to AA sequence:RefSeq:WP_012406689.1
COORDINATES: similar to AA sequence:RefSeq:WP_012406688.1
COORDINATES: similar to AA sequence:RefSeq:WP_011365652.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354543.1
COORDINATES: similar to AA sequence:RefSeq:WP_011514906.1
GO:0003896 - DNA primase activity [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
primase-helicase zinc-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011154247.1
COORDINATES: similar to AA sequence:RefSeq:WP_011514907.1
COORDINATES: similar to AA sequence:RefSeq:WP_008649407.1
COORDINATES: similar to AA sequence:RefSeq:WP_008649408.1
COORDINATES: protein motif:HMM:NF017124.2
GO:0045893 - positive regulation of DNA-templated transcription [Evidence IEA]; GO:1902208 - regulation of bacterial-type flagellum assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012354552.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242043.1
shufflon system plasmid conjugative transfer pilus tip adhesin PilV
COORDINATES: similar to AA sequence:RefSeq:WP_018314034.1
COORDINATES: similar to AA sequence:RefSeq:WP_018314033.1
COORDINATES: similar to AA sequence:RefSeq:WP_004636268.1
type II secretion system F family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004636270.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354560.1
COORDINATES: protein motif:HMM:TIGR03021.1
GO:0009297 - pilus assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012435633.1
COORDINATES: similar to AA sequence:RefSeq:WP_018314027.1
toxin co-regulated pilus biosynthesis Q family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012354564.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012354565.1
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_020203507.1
transglycosylase SLT domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008649450.1
COORDINATES: similar to AA sequence:RefSeq:WP_007588637.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354569.1
COORDINATES: similar to AA sequence:RefSeq:WP_020203511.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354571.1
COORDINATES: similar to AA sequence:RefSeq:WP_008645668.1
VirB3 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_012354573.1
VirB4 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_020203515.1
COORDINATES: protein motif:HMM:NF016491.2
GO:0030255 - protein secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008649463.1
COORDINATES: similar to AA sequence:RefSeq:WP_006757255.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0015074 - DNA integration [Evidence IEA]
Members of this protein family are the putative conjugative coupling factor, TraD, as the term is used for the SXT and TOL plasmid systems; Derived by automated computational analysis using gene prediction method: Protein Homology.
conjugative transfer system coupling protein TraD
COORDINATES: similar to AA sequence:RefSeq:WP_012354578.1
COORDINATES: similar to AA sequence:RefSeq:WP_011514911.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354580.1
COORDINATES: similar to AA sequence:RefSeq:WP_008649471.1
COORDINATES: similar to AA sequence:RefSeq:WP_008649473.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]