Vibrio gazogenes strain ATCC 43942 plasmid unnamed1, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.
Submitted (19-DEC-2016) Alkek Center for Metagenomics and Microbiome Research, Department of Molecular Virology and Microbiology, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP018837.1.\nSource DNA and bacterial cultures: P. M. Gummadidala, Y. P. Chen,\nC. Mitra, A. W. Decho, and A. Chanda Direct requests to A. Chanda,\nEnvironmental Health Sciences, Norman J. Arnold School of Public\nHealth, University of South Carolina.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRT Analysis RS_HGAP_Assembly.2 v.\n 2.3.0.140936.p4.150482\nAssembly Name :: ATCC_43942_Vibrio_gazogenes\nGenome Coverage :: 185x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/30/2022 04:06:04\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,259\nCDSs (total) :: 4,139\nGenes (coding) :: 4,094\nCDSs (with protein) :: 4,094\nGenes (RNA) :: 120\nrRNAs :: 9, 8, 8 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 8, 8 (5S, 16S, 23S)\ntRNAs :: 91\nncRNAs :: 4\nPseudo Genes (total) :: 45\nCDSs (without protein) :: 45\nPseudo Genes (ambiguous residues) :: 0 of 45\nPseudo Genes (frameshifted) :: 14 of 45\nPseudo Genes (incomplete) :: 36 of 45\nPseudo Genes (internal stop) :: 6 of 45\nPseudo Genes (multiple problems) :: 10 of 45\nCRISPR Arrays :: 6\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_017191184.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019274010.1
COORDINATES: similar to AA sequence:RefSeq:WP_017071466.1
COORDINATES: similar to AA sequence:RefSeq:WP_019274015.1
COORDINATES: similar to AA sequence:RefSeq:WP_017045640.1
COORDINATES: similar to AA sequence:RefSeq:WP_017089929.1
COORDINATES: protein motif:HMM:NF023792.2
COORDINATES: protein motif:HMM:NF013540.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009846701.1
COORDINATES: similar to AA sequence:RefSeq:WP_017084819.1
COORDINATES: similar to AA sequence:RefSeq:WP_017045654.1
COORDINATES: similar to AA sequence:RefSeq:WP_004735830.1
COORDINATES: similar to AA sequence:RefSeq:WP_017819656.1
COORDINATES: similar to AA sequence:RefSeq:WP_004742727.1
COORDINATES: similar to AA sequence:RefSeq:WP_008221305.1