Vibrio gazogenes strain ATCC 43942 plasmid unnamed1, complete sequence.
type: Entry
definition: Vibrio gazogenes strain ATCC 43942 plasmid unnamed1, complete sequence.
sequence version: NZ_CP018837.1
sequence date: 2022-12-30
sequence: sequence
division: CON
label: NZ_CP018837.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN06053751
keyword: RefSeq
source: Vibrio gazogenes
organism: Vibrio gazogenes
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.
reference: 1
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP018837.1.\nSource DNA and bacterial cultures: P. M. Gummadidala, Y. P. Chen,\nC. Mitra, A. W. Decho, and A. Chanda Direct requests to A. Chanda,\nEnvironmental Health Sciences, Norman J. Arnold School of Public\nHealth, University of South Carolina.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRT Analysis RS_HGAP_Assembly.2 v.\n 2.3.0.140936.p4.150482\nAssembly Name :: ATCC_43942_Vibrio_gazogenes\nGenome Coverage :: 185x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/30/2022 04:06:04\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,259\nCDSs (total) :: 4,139\nGenes (coding) :: 4,094\nCDSs (with protein) :: 4,094\nGenes (RNA) :: 120\nrRNAs :: 9, 8, 8 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 8, 8 (5S, 16S, 23S)\ntRNAs :: 91\nncRNAs :: 4\nPseudo Genes (total) :: 45\nCDSs (without protein) :: 45\nPseudo Genes (ambiguous residues) :: 0 of 45\nPseudo Genes (frameshifted) :: 14 of 45\nPseudo Genes (incomplete) :: 36 of 45\nPseudo Genes (internal stop) :: 6 of 45\nPseudo Genes (multiple problems) :: 10 of 45\nCRISPR Arrays :: 6\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 11916
topology: circular
so has quality: SO_0000988
location: 1..11916
location: region:1-11916:1
RO_0002162: 687

NZ_CP018837
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN06053751
type: BioSample
SIO_000068: biosample

1
title: Direct Submission
author: Holder, M.E.
author: O'Brien, J.L.
author: Ajami, N.J.
author: Petrosino, J.F.
journal: Submitted (19-DEC-2016) Alkek Center for Metagenomics and Microbiome Research, Department of Molecular Virology and Microbiology, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11916:1
position: 11916
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-11916:1:source
so part of: sequence
organism: Vibrio gazogenes
mol type: genomic DNA
strain: ATCC 43942
isolation source: Water
culture collection: ATCC:43942
plasmid: unnamed1
collection date: 1980-07

687
type: Taxonomy
SIO_000068: taxonomy

BSQ33_RS21895
type: Gene
subclass of: SO_0000704
RO_0002162: 687
locus tag: BSQ33_RS21895
so part of: sequence
location: join(11778..11916,1..20)
location: region:1-11916:1
so has part: feature:11778-11916:1:exon
so has part: feature:1-20:1:exon
subclass of: SO_0000010

urn:…
SIO_000300: 1
SIO_000628: feature:11778-11916:1:exon

position:11778:1
position: 11778
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-20:1:exon

position:20:1
position: 20
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

BSQ33_RS21895
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 687
locus tag: BSQ33_RS21895
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPVFVIPLLASVAGFGVGLWTGSATGKLLKVFAALMVIYLAWRFYNAKGGGQ
SIO_010081: BSQ33_RS21895
subclass of: SO_0000673
so part of: BSQ33_RS21895
location: join(11778..11916,1..20)
location: region:1-11916:1
so has part: feature:11778-11916:1:exon
so has part: feature:1-20:1:exon

WP_198298124.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11778-11916:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-20:1:exon

BSQ33_RS21370
type: Gene
subclass of: SO_0000704
RO_0002162: 687
locus tag: BSQ33_RS21370
old locus tag: BSQ33_21460
so part of: sequence
location: 17..229
location: region:17-229:1
so has part: feature:17-229:1:exon
subclass of: SO_0000010

position:17:1
position: 17
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:229:1
position: 229
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17-229:1:exon

BSQ33_RS21370
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 687
locus tag: BSQ33_RS21370
old locus tag: BSQ33_21460
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017191184.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIPSFGGGLTNSGTMPISANGGQAGPSGASNKSSFGGIRNGAINFGGGSPGQWIPWIAVAIGVTWWLCRK
SIO_010081: BSQ33_RS21370
subclass of: SO_0000673
so part of: BSQ33_RS21370
location: 17..229
location: region:17-229:1
so has part: feature:17-229:1:exon

WP_088132940.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17-229:1:exon

BSQ33_RS21375
type: Gene
subclass of: SO_0000704
RO_0002162: 687
locus tag: BSQ33_RS21375
old locus tag: BSQ33_21465
so part of: sequence
location: 217..645
location: region:217-645:1
so has part: feature:217-645:1:exon
subclass of: SO_0000010

position:217:1
position: 217
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:645:1
position: 645
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:217-645:1:exon

BSQ33_RS21375
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 687
locus tag: BSQ33_RS21375
old locus tag: BSQ33_21465
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019274010.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQKITISYLAPSRRDINAHFELLKPAFNGSHDPKSEWLDVVEKVQTGQASLYLIKAKDVQIRFVGRVIDGIYHVICSQGRGLAHAAPVIIERCLSMGYPAISYHAYRPGMGRLLRGFGFELDSVPAPGESRYVLNLEGYKHG
SIO_010081: BSQ33_RS21375
subclass of: SO_0000673
so part of: BSQ33_RS21375
location: 217..645
location: region:217-645:1
so has part: feature:217-645:1:exon

WP_157721478.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:217-645:1:exon

BSQ33_RS21380
type: Gene
subclass of: SO_0000704
RO_0002162: 687
locus tag: BSQ33_RS21380
old locus tag: BSQ33_21470
so part of: sequence
location: 638..1183
location: region:638-1183:1
so has part: feature:638-1183:1:exon
subclass of: SO_0000010

position:638:1
position: 638
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1183:1
position: 1183
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:638-1183:1:exon

BSQ33_RS21380
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 687
locus tag: BSQ33_RS21380
old locus tag: BSQ33_21470
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017071466.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGKGGSSSSSTTNNNTNINGTNAVQGDNLGVLISGVQGSVGNITMTDQGATKTAGKIAEEALNLGGDTVSAMASSIDKTLDSNTKVSKAAFDFGEESLKGALSASNKSLDKMESVSESAMSALKSMASQSNESARAALTMAGDAKQREQIGNATEWTKVAYAICAVLAIGAVAYAIVKGSK
SIO_010081: BSQ33_RS21380
subclass of: SO_0000673
so part of: BSQ33_RS21380
location: 638..1183
location: region:638-1183:1
so has part: feature:638-1183:1:exon

WP_088132937.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:638-1183:1:exon

BSQ33_RS21385
type: Gene
subclass of: SO_0000704
RO_0002162: 687
locus tag: BSQ33_RS21385
old locus tag: BSQ33_21475
so part of: sequence
location: 1180..1788
location: region:1180-1788:1
so has part: feature:1180-1788:1:exon
subclass of: SO_0000010

position:1180:1
position: 1180
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1788:1
position: 1788
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1180-1788:1:exon

BSQ33_RS21385
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 687
locus tag: BSQ33_RS21385
old locus tag: BSQ33_21475
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MILQPNTETPISVGGRGKYLIVRSTSAPVFISADGLSPQRLESGDRINVLEFEKMFLSHHSHKTVNFDYQISDLEHKPASTSGLVVQRIIEPIQFEASVRVEDGLKVATIPSSQMVTHPDIEITPQTKTKLTSGGYRQVVMQVISDELTDLRVGDFNVSGNRGALVIGSKAAIGSLSFNFSGELYVYNVSSNTARLAVLEVK
SIO_010081: BSQ33_RS21385
subclass of: SO_0000673
so part of: BSQ33_RS21385
location: 1180..1788
location: region:1180-1788:1
so has part: feature:1180-1788:1:exon

WP_088132935.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1180-1788:1:exon

BSQ33_RS21390
type: Gene
subclass of: SO_0000704
RO_0002162: 687
locus tag: BSQ33_RS21390
old locus tag: BSQ33_21480
so part of: sequence
location: 1785..2168
location: region:1785-2168:1
so has part: feature:1785-2168:1:exon
subclass of: SO_0000010

position:1785:1
position: 1785
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2168:1
position: 2168
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1785-2168:1:exon

BSQ33_RS21390
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 687
locus tag: BSQ33_RS21390
old locus tag: BSQ33_21480
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MMQINSPVSVVQSLPEVEVKTMPQIEVKTMPHTEVSVTNWKAVQTVTQQPTEIYGRNDVVLNGSTQRIDANPKRQGLILQADEGNQGEIVIQSFLRVPAGAVVEFPASNAVTVEGIAGDVLHIGERV
SIO_010081: BSQ33_RS21390
subclass of: SO_0000673
so part of: BSQ33_RS21390
location: 1785..2168
location: region:1785-2168:1
so has part: feature:1785-2168:1:exon

WP_088132933.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1785-2168:1:exon

BSQ33_RS21395
type: Gene
subclass of: SO_0000704
RO_0002162: 687
locus tag: BSQ33_RS21395
old locus tag: BSQ33_21485
so part of: sequence
location: 2165..2614
location: region:2165-2614:1
so has part: feature:2165-2614:1:exon
subclass of: SO_0000010

position:2165:1
position: 2165
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2614:1
position: 2614
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2165-2614:1:exon

BSQ33_RS21395
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 687
locus tag: BSQ33_RS21395
old locus tag: BSQ33_21485
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNFSYSQASGWKRGDIRIWTRPLSEIPHGWQLCDGTNGTPNLLDRALVGAGRMYQQHEMFGDTFRYPGVNVQPRTLTHQNLPAHNHTFARVWFHESSGGSNVWGISGSSSAPTATSYTGGNVAHNHDATVTPIDTRQPSIGIIFIMKMR
SIO_010081: BSQ33_RS21395
subclass of: SO_0000673
so part of: BSQ33_RS21395
location: 2165..2614
location: region:2165-2614:1
so has part: feature:2165-2614:1:exon

WP_088132931.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2165-2614:1:exon

BSQ33_RS21400
type: Gene
subclass of: SO_0000704
RO_0002162: 687
locus tag: BSQ33_RS21400
old locus tag: BSQ33_21490
so part of: sequence
location: 2624..2884
location: region:2624-2884:1
so has part: feature:2624-2884:1:exon
subclass of: SO_0000010

position:2624:1
position: 2624
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2884:1
position: 2884
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2624-2884:1:exon

BSQ33_RS21400
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 687
locus tag: BSQ33_RS21400
old locus tag: BSQ33_21490
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKVTAITQDQMIIVDGVVAEMSKIGGYQMTHGEWAVQYDTAIGAGHIEYLDARPNQVIGENEFNARYAWLIDEHQRYQDYVKDQSA
SIO_010081: BSQ33_RS21400
subclass of: SO_0000673
so part of: BSQ33_RS21400
location: 2624..2884
location: region:2624-2884:1
so has part: feature:2624-2884:1:exon

WP_021020713.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2624-2884:1:exon

BSQ33_RS21405
type: Gene
subclass of: SO_0000704
RO_0002162: 687
locus tag: BSQ33_RS21405
old locus tag: BSQ33_21495
so part of: sequence
location: 2881..3345
location: region:2881-3345:1
so has part: feature:2881-3345:1:exon
subclass of: SO_0000010

position:2881:1
position: 2881
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3345:1
position: 3345
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2881-3345:1:exon

BSQ33_RS21405
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 687
locus tag: BSQ33_RS21405
old locus tag: BSQ33_21495
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019274015.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: virion protein
translation: MNQPLLISLTIITGGLAYMLYRSTLPRGVRNNNPLNIRDSANDWEGKSGFNRDKEFEEFKHPVYGFRAGARILRSYSRQGYKTLSQMIYRFAPDNENDTALYVQQISQWTGLEPNQTVNVNDNDQLARLLYAMSRKEVGNYYGLSMAQQGVAMA
SIO_010081: BSQ33_RS21405
subclass of: SO_0000673
so part of: BSQ33_RS21405
location: 2881..3345
location: region:2881-3345:1
so has part: feature:2881-3345:1:exon

WP_232471936.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2881-3345:1:exon

BSQ33_RS21410
type: Gene
subclass of: SO_0000704
RO_0002162: 687
locus tag: BSQ33_RS21410
old locus tag: BSQ33_21500
so part of: sequence
location: 3437..3658
location: region:3437-3658:1
so has part: feature:3437-3658:1:exon
subclass of: SO_0000010

position:3437:1
position: 3437
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3658:1
position: 3658
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3437-3658:1:exon

BSQ33_RS21410
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 687
locus tag: BSQ33_RS21410
old locus tag: BSQ33_21500
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017045640.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSDFFKNKLGIDINQASTKKGFALIGAGVALAAGHPELLTASITPDGVHYGGLIGTAAPVFIGIWETLRDEFK
SIO_010081: BSQ33_RS21410
subclass of: SO_0000673
so part of: BSQ33_RS21410
location: 3437..3658
location: region:3437-3658:1
so has part: feature:3437-3658:1:exon

WP_021020710.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3437-3658:1:exon

BSQ33_RS21900
type: Gene
subclass of: SO_0000704
RO_0002162: 687
locus tag: BSQ33_RS21900
so part of: sequence
location: 3658..3816
location: region:3658-3816:1
so has part: feature:3658-3816:1:exon
subclass of: SO_0000010

position:3816:1
position: 3816
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3658-3816:1:exon

BSQ33_RS21900
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 687
locus tag: BSQ33_RS21900
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017089929.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAEYQTLIVAAVSALFSGIGVGITLKTDVKWLRVMLEKIDQRVTHLEQGKGQ
SIO_010081: BSQ33_RS21900
subclass of: SO_0000673
so part of: BSQ33_RS21900
location: 3658..3816
location: region:3658-3816:1
so has part: feature:3658-3816:1:exon

WP_198298123.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3658-3816:1:exon

BSQ33_RS21755
type: Gene
subclass of: SO_0000704
RO_0002162: 687
locus tag: BSQ33_RS21755
so part of: sequence
location: 3919..4077
location: region:3919-4077:1
so has part: feature:3919-4077:1:exon
subclass of: SO_0000010

position:3919:1
position: 3919
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4077:1
position: 4077
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3919-4077:1:exon

BSQ33_RS21755
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 687
locus tag: BSQ33_RS21755
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAKSLTVRQAGRKGGNATKRKWKTDKLFAATMRKKLSAAGKKSVKVRRQKKK
SIO_010081: BSQ33_RS21755
subclass of: SO_0000673
so part of: BSQ33_RS21755
location: 3919..4077
location: region:3919-4077:1
so has part: feature:3919-4077:1:exon

WP_157721336.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3919-4077:1:exon

BSQ33_RS21425
type: Gene
subclass of: SO_0000704
RO_0002162: 687
locus tag: BSQ33_RS21425
old locus tag: BSQ33_21515
so part of: sequence
location: complement(4851..5237)
location: region:4851-5237:-1
so has part: feature:4851-5237:-1:exon
subclass of: SO_0000010

position:4851:-1
position: 4851
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5237:-1
position: 5237
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4851-5237:-1:exon

BSQ33_RS21425
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 687
locus tag: BSQ33_RS21425
old locus tag: BSQ33_21515
inference: COORDINATES: protein motif:HMM:NF023792.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF3653 domain-containing protein
translation: MKKLRQRIKLRDELYQCGVLNRQLSEILISEFDSMEEAADYLGCSVSSLYRFKQQNKWPVAQARLLLIRHRGYLPSSTPWYGFKIRGDKLLTPSGREFSAIELNIPKNIKSNDSYALLMRSKKRFKRS
SIO_010081: BSQ33_RS21425
subclass of: SO_0000673
so part of: BSQ33_RS21425
location: complement(4851..5237)
location: region:4851-5237:-1
so has part: feature:4851-5237:-1:exon

WP_088132926.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4851-5237:-1:exon

BSQ33_RS21430
type: Gene
subclass of: SO_0000704
RO_0002162: 687
locus tag: BSQ33_RS21430
old locus tag: BSQ33_21520
so part of: sequence
location: complement(5511..5771)
location: region:5511-5771:-1
so has part: feature:5511-5771:-1:exon
subclass of: SO_0000010

position:5511:-1
position: 5511
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5771:-1
position: 5771
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5511-5771:-1:exon

BSQ33_RS21430
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 687
locus tag: BSQ33_RS21430
old locus tag: BSQ33_21520
inference: COORDINATES: protein motif:HMM:NF013540.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MITTIELLDMLKEEADLPSDYAVAKFLNVTHQAVSRWRNGKVMSEEIAIKVARVLNIDEDVVILSNLAEKQTNDKAKQALLKLMAS
SIO_010081: BSQ33_RS21430
subclass of: SO_0000673
so part of: BSQ33_RS21430
location: complement(5511..5771)
location: region:5511-5771:-1
so has part: feature:5511-5771:-1:exon

WP_088132960.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5511-5771:-1:exon

BSQ33_RS21440
type: Gene
subclass of: SO_0000704
RO_0002162: 687
locus tag: BSQ33_RS21440
old locus tag: BSQ33_21530
so part of: sequence
location: 6309..6911
location: region:6309-6911:1
so has part: feature:6309-6911:1:exon
subclass of: SO_0000010

position:6309:1
position: 6309
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6911:1
position: 6911
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6309-6911:1:exon

BSQ33_RS21440
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 687
locus tag: BSQ33_RS21440
old locus tag: BSQ33_21530
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009846701.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSMINATGKQRKDRPLAALNRSILSKIAHCPSSSAAFTTTNGRAIRQSFARDICRVMTVLVDEMCFHSNKVGVATVHGFSLRTWGFIAEAVNLPLWRVKQCVKYAFQKGWITSKQPRERYTGKDNRDQWRGLASIKRVTETYFKDLGIYEQYQEAKTAAKQWLKMLARRLQRPVKYIQTPITLLRRRRKEAAINHLPQNT
SIO_010081: BSQ33_RS21440
subclass of: SO_0000673
so part of: BSQ33_RS21440
location: 6309..6911
location: region:6309-6911:1
so has part: feature:6309-6911:1:exon

WP_088132956.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6309-6911:1:exon

BSQ33_RS21445
type: Gene
subclass of: SO_0000704
RO_0002162: 687
locus tag: BSQ33_RS21445
old locus tag: BSQ33_21535
so part of: sequence
location: 7541..8014
location: region:7541-8014:1
so has part: feature:7541-8014:1:exon
subclass of: SO_0000010

position:7541:1
position: 7541
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8014:1
position: 8014
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7541-8014:1:exon

BSQ33_RS21445
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 687
locus tag: BSQ33_RS21445
old locus tag: BSQ33_21535
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSIEFAIFKVVRKGYKNMISFFRRNELKDPELIDFELADVRVVNFGTALKIDILVKNFGLTSLSISSIHPAISVADYMIDTAPIVTYTKIPPETRTGQRVSLIVPSPYLCDKKFRQASHIVSVNHLTLLAHRNNESKLIEMDYMGHTKWQREIKNYF
SIO_010081: BSQ33_RS21445
subclass of: SO_0000673
so part of: BSQ33_RS21445
location: 7541..8014
location: region:7541-8014:1
so has part: feature:7541-8014:1:exon

WP_088132953.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7541-8014:1:exon

BSQ33_RS21450
type: Gene
subclass of: SO_0000704
RO_0002162: 687
locus tag: BSQ33_RS21450
old locus tag: BSQ33_21540
so part of: sequence
location: 8088..8354
location: region:8088-8354:1
so has part: feature:8088-8354:1:exon
subclass of: SO_0000010

position:8088:1
position: 8088
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8354:1
position: 8354
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8088-8354:1:exon

BSQ33_RS21450
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 687
locus tag: BSQ33_RS21450
old locus tag: BSQ33_21540
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDNKNNHHPFFSVGNHRITYEQQQNFPQDRENCIAVDSIRSLETLVNRSQEPLEIVFHPSEPDVWPEFMAFIIAWHVRQSVSGLFRAA
SIO_010081: BSQ33_RS21450
subclass of: SO_0000673
so part of: BSQ33_RS21450
location: 8088..8354
location: region:8088-8354:1
so has part: feature:8088-8354:1:exon

WP_088132951.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8088-8354:1:exon

BSQ33_RS21455
type: Gene
subclass of: SO_0000704
RO_0002162: 687
locus tag: BSQ33_RS21455
old locus tag: BSQ33_21545
so part of: sequence
location: 8383..8700
location: region:8383-8700:1
so has part: feature:8383-8700:1:exon
subclass of: SO_0000010

position:8383:1
position: 8383
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8700:1
position: 8700
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8383-8700:1:exon

BSQ33_RS21455
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 687
locus tag: BSQ33_RS21455
old locus tag: BSQ33_21545
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017084819.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKTLSIDEINRDLNALDAADQLTSVLKAEIDKFKDMNPQKLVKQAMGMLMKGDMSLEALGLPVNLFDQIEQLEKINRVARAKYRARIIADRAMLGEIEPALMTEA
SIO_010081: BSQ33_RS21455
subclass of: SO_0000673
so part of: BSQ33_RS21455
location: 8383..8700
location: region:8383-8700:1
so has part: feature:8383-8700:1:exon

WP_088132949.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8383-8700:1:exon

BSQ33_RS21905
type: Gene
subclass of: SO_0000704
RO_0002162: 687
locus tag: BSQ33_RS21905
so part of: sequence
location: 8704..9174
location: region:8704-9174:1
so has part: feature:8704-9174:1:exon
subclass of: SO_0000010

position:8704:1
position: 8704
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9174:1
position: 9174
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8704-9174:1:exon

BSQ33_RS21905
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 687
locus tag: BSQ33_RS21905
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017045654.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MARQQNPVRGFVRCPVCTSSSTVHQVGEGRLIETGEPPKNNRNLGLMYYRCPECGNSSISRKVNDFIGVNMVENESQLQAEARLPDPVTPLPITGEVVTDETSQDTVSEQDNRVVIRRFIMLIGVIVFIVWLIRRFMLRVKLNEVNESAGVQDATA
SIO_010081: BSQ33_RS21905
subclass of: SO_0000673
so part of: BSQ33_RS21905
location: 8704..9174
location: region:8704-9174:1
so has part: feature:8704-9174:1:exon

WP_198298125.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8704-9174:1:exon

BSQ33_RS21465
type: Gene
subclass of: SO_0000704
RO_0002162: 687
locus tag: BSQ33_RS21465
old locus tag: BSQ33_21555
so part of: sequence
location: 9161..9658
location: region:9161-9658:1
so has part: feature:9161-9658:1:exon
subclass of: SO_0000010

position:9161:1
position: 9161
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9658:1
position: 9658
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9161-9658:1:exon

BSQ33_RS21465
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 687
locus tag: BSQ33_RS21465
old locus tag: BSQ33_21555
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004735830.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQQPDTDSELLEPDTSTDDWGDFSAVIDALNQQENKPTEPDDTEPNKSDDKEEQSEAAAAFLDIAFVVTEQVTSMLVGFEFEFDEKGKTKVIEAAKPVLTKHSEGIFMKMLGNYFEEATLLFAIITLGYSTRKQIVKTKKLIAQQAKQDRGEGEYAEEATAVAVS
SIO_010081: BSQ33_RS21465
subclass of: SO_0000673
so part of: BSQ33_RS21465
location: 9161..9658
location: region:9161-9658:1
so has part: feature:9161-9658:1:exon

WP_088132947.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9161-9658:1:exon

BSQ33_RS21470
type: Gene
subclass of: SO_0000704
RO_0002162: 687
locus tag: BSQ33_RS21470
old locus tag: BSQ33_21560
so part of: sequence
location: 9624..10391
location: region:9624-10391:1
so has part: feature:9624-10391:1:exon
subclass of: SO_0000010

position:9624:1
position: 9624
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10391:1
position: 10391
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9624-10391:1:exon

BSQ33_RS21470
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 687
locus tag: BSQ33_RS21470
old locus tag: BSQ33_21560
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017819656.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPKKPQPLQFPNPVNSNQSLDAEHTIYVAGTGGGKTSAVKHLDLIPKGAQVVFFDPYKNYAEDKFKGQMVQATSSRLTFVRALVSARKRGDTFKLAYVPESGANSEELEFFSAVVWSVGNGHAPALHVVIEELASCAETSAKLKGRAGELLRGGRQYGLVIHTVFQKGQEVPKTVTDQSAVWWIGAVNSAADAEWLSIRRGINVNRIIGLKSAKVNKKTINKPIAEYLLVRDGIGNIEHAAFNCRTGAKLSLNYR
SIO_010081: BSQ33_RS21470
subclass of: SO_0000673
so part of: BSQ33_RS21470
location: 9624..10391
location: region:9624-10391:1
so has part: feature:9624-10391:1:exon

WP_088132946.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9624-10391:1:exon

BSQ33_RS21475
type: Gene
subclass of: SO_0000704
RO_0002162: 687
locus tag: BSQ33_RS21475
old locus tag: BSQ33_21565
so part of: sequence
location: 10680..11486
location: region:10680-11486:1
so has part: feature:10680-11486:1:exon
subclass of: SO_0000010

position:10680:1
position: 10680
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11486:1
position: 11486
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10680-11486:1:exon

BSQ33_RS21475
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 687
locus tag: BSQ33_RS21475
old locus tag: BSQ33_21565
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004742727.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: major capsid protein P2
translation: MNSVMKLNSFTGVGYGEKASLTIPTGPVYEEIFLETNLSPEQIKRVSITLNADEIIVLDGRLMKALEAYKGMPSIDGFYHIPLADITAKTKNGMRYTALVTEPGDNIVLEIEIAPDNSGSAPAIQLKGHATVSPQQAARIVVPQIKKHTMQATSTENEFLDLTSSPLLLVRRMHFLSETVNSLEIHRDYIKVYDTTRAVETMRAKRNKKYWQSGMYHFDPIMRGYFIDELFQTAHTNELKFTVKTDEAVGSIPIIVESVKIVRPDLVQ
SIO_010081: BSQ33_RS21475
subclass of: SO_0000673
so part of: BSQ33_RS21475
location: 10680..11486
location: region:10680-11486:1
so has part: feature:10680-11486:1:exon

WP_088132944.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10680-11486:1:exon

BSQ33_RS21480
type: Gene
subclass of: SO_0000704
RO_0002162: 687
locus tag: BSQ33_RS21480
old locus tag: BSQ33_21570
so part of: sequence
location: 11498..11767
location: region:11498-11767:1
so has part: feature:11498-11767:1:exon
subclass of: SO_0000010

position:11498:1
position: 11498
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11767:1
position: 11767
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11498-11767:1:exon

BSQ33_RS21480
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 687
locus tag: BSQ33_RS21480
old locus tag: BSQ33_21570
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008221305.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAFLDDLSNFGSGLLDSVGEGFDSLVGAATSDNSSVNANTQPQATHQADNNGNKVTPSQPSELNQTWLYVGGGIALLILIVLFVMLMKR
SIO_010081: BSQ33_RS21480
subclass of: SO_0000673
so part of: BSQ33_RS21480
location: 11498..11767
location: region:11498-11767:1
so has part: feature:11498-11767:1:exon

WP_088132942.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11498-11767:1:exon