Methylomicrobium album BG8 plasmid pMETAL01, whole genome shotgun sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomicrobium.
Genome Sequence of the Obligate Gammaproteobacterial Methanotroph Methylomicrobium album Strain BG8
Submitted (03-NOV-2011) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
Submitted (11-MAY-2011) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCM001476.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4084189\nSource DNA and organism available from Lisa Stein\n(lisa.stein@ualberta.ca)\nContacts: Lisa Stein (lisa.stein@ualberta.ca)\n Tanja Woyke (microbe@cuba.jgi-psf.org)\nAnnotation done by JGI-ORNL and JGI-PGF\nFinishing done by JGI-LANL\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. it is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##MIGS-Data-START##\ninvestigation_type :: bacteria_archaea\nproject_name :: Methylomicrobium album BG8\ncollection_date :: before 1970\nlat_lon :: Missing\ndepth :: Missing\nalt_elev :: Missing\ncountry :: United Kingdom\nenvironment :: Soil\nnum_replicons :: 2\nref_biomaterial :: ATCC 33003, NCIB 11123\nbiotic_relationship :: Free living\ntrophic_level :: Methanotroph\nrel_to_oxygen :: Obligate aerobe\nisol_growth_condt :: 5476891\nsequencing_meth :: WGS\nassembly :: Newbler v. 2.3\nfinishing_strategy :: Noncontiguous Finished\nGOLD Stamp ID :: Gi02102\nType Strain :: Yes\nGreengenes ID :: 8050\nFunding Program :: DOE-CSP 2008\nGene Calling Method :: Prodigal 1.4, GenePRIMP\nIsolation Site :: muddy water\nIsolation Comments :: isolated by R. Whittenbury\nCell Shape :: Coccus-shaped\nMotility :: Motile\nTemperature Range :: Mesophile\nTemperature Optimum :: 30C\nGram Staining :: Gram-\nDiseases :: None\n##MIGS-Data-END##\n\n##Genome-Assembly-Data-START##\nFinishing Goal :: Noncontiguous Finished\nCurrent Finishing Status :: Noncontiguous Finished\nAssembly Method :: Newbler v. 2.3\nGenome Coverage :: 30x\nSequencing Technology :: 454; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/02/2023 02:03:12\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,022\nCDSs (total) :: 3,970\nGenes (coding) :: 3,920\nCDSs (with protein) :: 3,920\nGenes (RNA) :: 52\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 42\nncRNAs :: 4\nPseudo Genes (total) :: 50\nCDSs (without protein) :: 50\nPseudo Genes (ambiguous residues) :: 0 of 50\nPseudo Genes (frameshifted) :: 15 of 50\nPseudo Genes (incomplete) :: 38 of 50\nPseudo Genes (internal stop) :: 13 of 50\nPseudo Genes (multiple problems) :: 14 of 50\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF013395.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004164047.1
COORDINATES: similar to AA sequence:RefSeq:WP_005371298.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_020565048.1
COORDINATES: similar to AA sequence:RefSeq:WP_005371294.1
COORDINATES: similar to AA sequence:RefSeq:WP_008904100.1
COORDINATES: similar to AA sequence:RefSeq:WP_018679947.1
COORDINATES: similar to AA sequence:RefSeq:WP_020160459.1
COORDINATES: similar to AA sequence:RefSeq:WP_013028104.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_020484204.1
GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005372478.1
COORDINATES: similar to AA sequence:RefSeq:WP_013028112.1
COORDINATES: similar to AA sequence:RefSeq:WP_013028113.1
COORDINATES: similar to AA sequence:RefSeq:WP_017838842.1
COORDINATES: similar to AA sequence:RefSeq:WP_020157705.1
COORDINATES: similar to AA sequence:RefSeq:WP_004659431.1
COORDINATES: similar to AA sequence:RefSeq:WP_013820193.1
GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017842821.1
COORDINATES: similar to AA sequence:RefSeq:WP_017841444.1
COORDINATES: similar to AA sequence:RefSeq:WP_012972347.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010138199.1
COORDINATES: similar to AA sequence:RefSeq:WP_014414412.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017184065.1
COORDINATES: similar to AA sequence:RefSeq:WP_011745157.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007412643.1
COORDINATES: similar to AA sequence:RefSeq:WP_007195274.1
COORDINATES: similar to AA sequence:RefSeq:WP_006577143.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: protein motif:HMM:NF014442.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020565925.1
translesion error-prone DNA polymerase V autoproteolytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_020160037.1
COORDINATES: similar to AA sequence:RefSeq:WP_011506039.1
GO:0019239 - deaminase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020504566.1
GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017841270.1
COORDINATES: similar to AA sequence:RefSeq:WP_017841272.1
COORDINATES: similar to AA sequence:RefSeq:WP_017841273.1
COORDINATES: similar to AA sequence:RefSeq:WP_017841291.1
COORDINATES: similar to AA sequence:RefSeq:WP_018294488.1
COORDINATES: similar to AA sequence:RefSeq:WP_020565908.1
COORDINATES: similar to AA sequence:RefSeq:WP_012406361.1
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
COORDINATES: protein motif:HMM:NF023168.2