Pristis pectinata isolate sPriPec2 chromosome 46, sPriPec2.1.pri, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Batoidea; Rhinopristiformes; Pristidae; Pristis.
REFSEQ INFORMATION: The reference sequence is identical to\nCM019900.1.\nAssembly name: sPriPec2.1.pri\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2019/12/19. The original whole-genome shotgun project has the\naccession WOXU00000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 18-NOV-2019\nAssembly Method :: FALCON v. DNANexus 1.9.0; FALCON-Unzip v.\n DNANexus 1.0.6; purge_haplotigs v.\n v1.0.3+ 1.Nov.2018; scaff10x v. 4.1.0;\n Bionano Solve DLS v. 3.2.1; Salsa HiC v.\n 2.2; Arrow smrtanalysis Pacbio polishing\n & gap filling v. 6.0.0.47841; longranger\n align v. 2.2.2; freebayes Illumina\n polishing v. 1.3.1; gEVAL manual curation\n v. 2019-11-18; VGP assembly pipeline\n individual v. 1.5\nAssembly Name :: sPriPec2.pri\nDiploid :: Principal pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 61.91x\nSequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq;\n Arima Genomics Hi-C; Bionano Genomics DLS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Updated annotation\nAnnotation Name :: GCF_009764475.1-RS_2023_02\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 02/25/2023\n##Genome-Annotation-Data-END##
alpha-2-macroglobulin-like; Derived by automated computational analysis using gene prediction method: Gnomon.
COORDINATES: polyA evidence [ECO:0006239]
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: alpha-2-macroglobulin-like
lysophosphatidic acid receptor 5-like; Derived by automated computational analysis using gene prediction method: Gnomon.
lysophosphatidic acid receptor 5-like, transcript variant X1
lysophosphatidic acid receptor 5-like, transcript variant X3
lysophosphatidic acid receptor 5-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 16-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 3 Proteins
eukaryotic translation initiation factor 3, subunit F; Derived by automated computational analysis using gene prediction method: Gnomon.
eukaryotic translation initiation factor 3, subunit F
eukaryotic translation initiation factor 3 subunit F
T cell receptor beta chain MC.7.G5-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
uromodulin-like; Derived by automated computational analysis using gene prediction method: Gnomon.
T cell receptor beta variable 30-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
immunoglobulin heavy variable 4-31-like; Derived by automated computational analysis using gene prediction method: Gnomon.
T-cell receptor beta chain V region C5-like; Derived by automated computational analysis using gene prediction method: Gnomon.
T-cell receptor beta chain V region C5-like
immunoglobulin kappa variable 3-15-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
Ig kappa chain V-VI region NQ2-6.1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
immunoglobulin lambda variable 1-47-like; Derived by automated computational analysis using gene prediction method: Gnomon.
immunoglobulin lambda variable 1-47-like
uncharacterized LOC127566854; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC127566854, transcript variant X2
uncharacterized LOC127566854, transcript variant X1
uncharacterized LOC127566853; Derived by automated computational analysis using gene prediction method: Gnomon.
murinoglobulin-2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
murinoglobulin-2-like, transcript variant X2
murinoglobulin-2-like, transcript variant X1
transient receptor potential cation channel subfamily V member 6-like; Derived by automated computational analysis using gene prediction method: Gnomon.
transient receptor potential cation channel subfamily V member 6-like