Pristis pectinata isolate sPriPec2 chromosome 45, sPriPec2.1.pri, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Batoidea; Rhinopristiformes; Pristidae; Pristis.
REFSEQ INFORMATION: The reference sequence is identical to\nCM019899.1.\nAssembly name: sPriPec2.1.pri\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2019/12/19. The original whole-genome shotgun project has the\naccession WOXU00000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 18-NOV-2019\nAssembly Method :: FALCON v. DNANexus 1.9.0; FALCON-Unzip v.\n DNANexus 1.0.6; purge_haplotigs v.\n v1.0.3+ 1.Nov.2018; scaff10x v. 4.1.0;\n Bionano Solve DLS v. 3.2.1; Salsa HiC v.\n 2.2; Arrow smrtanalysis Pacbio polishing\n & gap filling v. 6.0.0.47841; longranger\n align v. 2.2.2; freebayes Illumina\n polishing v. 1.3.1; gEVAL manual curation\n v. 2019-11-18; VGP assembly pipeline\n individual v. 1.5\nAssembly Name :: sPriPec2.pri\nDiploid :: Principal pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 61.91x\nSequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq;\n Arima Genomics Hi-C; Bionano Genomics DLS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Updated annotation\nAnnotation Name :: GCF_009764475.1-RS_2023_02\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 02/25/2023\n##Genome-Annotation-Data-END##
transfer RNA glycine (anticodon CCC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA methionine (anticodon CAU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA serine (anticodon AGA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA lysine (anticodon CUU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
uncharacterized LOC127566808; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC127566809; Derived by automated computational analysis using gene prediction method: Gnomon.
transfer RNA asparagine (anticodon GUU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
uncharacterized LOC127566794; Derived by automated computational analysis using gene prediction method: Gnomon.
transfer RNA aspartic acid (anticodon GUC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA proline (anticodon AGG); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA threonine (anticodon AGU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA phenylalanine (anticodon GAA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
uncharacterized LOC127566795; Derived by automated computational analysis using gene prediction method: Gnomon.
COORDINATES: polyA evidence [ECO:0006239]
uncharacterized LOC127566806; Derived by automated computational analysis using gene prediction method: Gnomon.
tigger transposable element-derived protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
tigger transposable element-derived protein 1-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read
tigger transposable element-derived protein 1-like, transcript variant X1
tigger transposable element-derived protein 1-like, transcript variant X2
tigger transposable element-derived protein 1-like
transfer RNA histidin (anticodon GUG); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
NACHT, LRR and PYD domains-containing protein 3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
NACHT, LRR and PYD domains-containing protein 3-like, transcript variant X1
NACHT, LRR and PYD domains-containing protein 3-like, transcript variant X3
NACHT, LRR and PYD domains-containing protein 3-like, transcript variant X2
NACHT, LRR and PYD domains-containing protein 3-like isoform X1
NACHT, LRR and PYD domains-containing protein 3-like isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
NACHT, LRR and PYD domains-containing protein 3-like, transcript variant X4
NACHT, LRR and PYD domains-containing protein 3-like isoform X3
uncharacterized LOC127566801; Derived by automated computational analysis using gene prediction method: Gnomon.
NACHT, LRR and PYD domains-containing protein 3-like, transcript variant X28
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
NACHT, LRR and PYD domains-containing protein 3-like, transcript variant X26
NACHT, LRR and PYD domains-containing protein 3-like, transcript variant X24
NACHT, LRR and PYD domains-containing protein 3-like, transcript variant X25
NACHT, LRR and PYD domains-containing protein 3-like, transcript variant X27
NACHT, LRR and PYD domains-containing protein 3-like, transcript variant X13
NACHT, LRR and PYD domains-containing protein 3-like, transcript variant X12
NACHT, LRR and PYD domains-containing protein 3-like, transcript variant X23
NACHT, LRR and PYD domains-containing protein 3-like, transcript variant X11
NACHT, LRR and PYD domains-containing protein 3-like, transcript variant X22
NACHT, LRR and PYD domains-containing protein 3-like, transcript variant X10
NACHT, LRR and PYD domains-containing protein 3-like, transcript variant X21
NACHT, LRR and PYD domains-containing protein 3-like, transcript variant X9
NACHT, LRR and PYD domains-containing protein 3-like, transcript variant X20
NACHT, LRR and PYD domains-containing protein 3-like, transcript variant X8
NACHT, LRR and PYD domains-containing protein 3-like, transcript variant X19
NACHT, LRR and PYD domains-containing protein 3-like, transcript variant X7
NACHT, LRR and PYD domains-containing protein 3-like, transcript variant X18
NACHT, LRR and PYD domains-containing protein 3-like, transcript variant X6
NACHT, LRR and PYD domains-containing protein 3-like, transcript variant X17
NACHT, LRR and PYD domains-containing protein 3-like, transcript variant X5
NACHT, LRR and PYD domains-containing protein 3-like, transcript variant X16
NACHT, LRR and PYD domains-containing protein 3-like, transcript variant X15
NACHT, LRR and PYD domains-containing protein 3-like, transcript variant X14
NACHT, LRR and PYD domains-containing protein 3-like, transcript variant X29
NACHT, LRR and PYD domains-containing protein 3-like, transcript variant X30
NACHT, LRR and PYD domains-containing protein 3-like isoform X4
NACHT, LRR and PYD domains-containing protein 3-like isoform X5
uncharacterized LOC127566796; Derived by automated computational analysis using gene prediction method: Gnomon.
tumor protein p63-regulated gene 1-like protein; Derived by automated computational analysis using gene prediction method: Gnomon.
tumor protein p63-regulated gene 1-like protein
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
ferritin heavy chain, oocyte isoform-like; Derived by automated computational analysis using gene prediction method: Gnomon.