Pristis pectinata isolate sPriPec2 chromosome 44, sPriPec2.1.pri, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Batoidea; Rhinopristiformes; Pristidae; Pristis.
REFSEQ INFORMATION: The reference sequence is identical to\nCM019898.1.\nAssembly name: sPriPec2.1.pri\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2019/12/19. The original whole-genome shotgun project has the\naccession WOXU00000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 18-NOV-2019\nAssembly Method :: FALCON v. DNANexus 1.9.0; FALCON-Unzip v.\n DNANexus 1.0.6; purge_haplotigs v.\n v1.0.3+ 1.Nov.2018; scaff10x v. 4.1.0;\n Bionano Solve DLS v. 3.2.1; Salsa HiC v.\n 2.2; Arrow smrtanalysis Pacbio polishing\n & gap filling v. 6.0.0.47841; longranger\n align v. 2.2.2; freebayes Illumina\n polishing v. 1.3.1; gEVAL manual curation\n v. 2019-11-18; VGP assembly pipeline\n individual v. 1.5\nAssembly Name :: sPriPec2.pri\nDiploid :: Principal pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 61.91x\nSequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq;\n Arima Genomics Hi-C; Bionano Genomics DLS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Updated annotation\nAnnotation Name :: GCF_009764475.1-RS_2023_02\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 02/25/2023\n##Genome-Annotation-Data-END##
vacuolar protein sorting-associated protein 37C-like; Derived by automated computational analysis using gene prediction method: Gnomon.
vacuolar protein sorting-associated protein 37C-like
Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC127566648; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
NACHT, LRR and PYD domains-containing protein 3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
NACHT, LRR and PYD domains-containing protein 3-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
uncharacterized LOC127566667; Derived by automated computational analysis using gene prediction method: Gnomon.
COORDINATES: polyA evidence [ECO:0006239]
beta-1,3-galactosyltransferase 5-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 Proteins
NACHT, LRR and PYD domains-containing protein 3-like, transcript variant X4
NACHT, LRR and PYD domains-containing protein 3-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
NACHT, LRR and PYD domains-containing protein 3-like isoform X4
NACHT, LRR and PYD domains-containing protein 3-like isoform X1
NACHT, LRR and PYD domains-containing protein 3-like, transcript variant X3
NACHT, LRR and PYD domains-containing protein 3-like, transcript variant X2
NACHT, LRR and PYD domains-containing protein 3-like isoform X3
NACHT, LRR and PYD domains-containing protein 3-like isoform X2
U1 spliceosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.6:RF00003
Derived by automated computational analysis using gene prediction method: cmsearch.
NACHT, LRR and PYD domains-containing protein 3-like, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
NACHT, LRR and PYD domains-containing protein 3-like, transcript variant X8
NACHT, LRR and PYD domains-containing protein 3-like, transcript variant X9
NACHT, LRR and PYD domains-containing protein 3-like, transcript variant X6
NACHT, LRR and PYD domains-containing protein 3-like, transcript variant X7
beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 3-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 2 codons; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 3-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 4 bases in 2 codons; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 4 bases in 2 codons; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: beta-1,3-galactosyltransferase 5-like
uncharacterized LOC127566687; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 24 Proteins
uncharacterized LOC127566685; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC127566685, transcript variant X2
uncharacterized LOC127566685, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
uncharacterized LOC127566673; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC127566669; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC127566669, transcript variant X1
uncharacterized LOC127566669, transcript variant X2
uncharacterized protein LOC127566669 isoform X1
uncharacterized protein LOC127566669 isoform X2
dentin sialophosphoprotein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
NACHT, LRR and PYD domains-containing protein 10-like; Derived by automated computational analysis using gene prediction method: Gnomon.
NACHT, LRR and PYD domains-containing protein 10-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 29 Proteins
5S ribosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.6:RF00001
E3 ubiquitin-protein ligase ZFP91-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase ZFP91-like
uncharacterized LOC127566676; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC127566676, transcript variant X14
uncharacterized LOC127566676, transcript variant X15
uncharacterized LOC127566676, transcript variant X16
uncharacterized LOC127566676, transcript variant X19
uncharacterized LOC127566676, transcript variant X18
uncharacterized LOC127566676, transcript variant X9
uncharacterized LOC127566676, transcript variant X12
uncharacterized LOC127566676, transcript variant X8
uncharacterized LOC127566676, transcript variant X11
uncharacterized LOC127566676, transcript variant X13
uncharacterized LOC127566676, transcript variant X4
uncharacterized LOC127566676, transcript variant X5
uncharacterized LOC127566676, transcript variant X10
uncharacterized LOC127566676, transcript variant X2
uncharacterized LOC127566676, transcript variant X7
uncharacterized LOC127566676, transcript variant X3
uncharacterized LOC127566676, transcript variant X1
uncharacterized LOC127566676, transcript variant X6
uncharacterized protein LOC127566676 isoform X3
uncharacterized protein LOC127566676 isoform X11
uncharacterized protein LOC127566676 isoform X4
uncharacterized protein LOC127566676 isoform X1
uncharacterized protein LOC127566676 isoform X5
uncharacterized protein LOC127566676 isoform X10
uncharacterized protein LOC127566676 isoform X2
uncharacterized protein LOC127566676 isoform X7
uncharacterized protein LOC127566676 isoform X6
uncharacterized protein LOC127566676 isoform X9
uncharacterized protein LOC127566676 isoform X8
uncharacterized LOC127566676, transcript variant X17
uncharacterized LOC127566707; Derived by automated computational analysis using gene prediction method: cmsearch.
erythroblast NAD(P)(+)--arginine ADP-ribosyltransferase-like; Derived by automated computational analysis using gene prediction method: Gnomon.
erythroblast NAD(P)(+)--arginine ADP-ribosyltransferase-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins
ecto-ADP-ribosyltransferase 5-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
erythroblast NAD(P)(+)--arginine ADP-ribosyltransferase-like, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
erythroblast NAD(P)(+)--arginine ADP-ribosyltransferase-like, transcript variant X2
erythroblast NAD(P)(+)--arginine ADP-ribosyltransferase-like, transcript variant X6
erythroblast NAD(P)(+)--arginine ADP-ribosyltransferase-like, transcript variant X1
erythroblast NAD(P)(+)--arginine ADP-ribosyltransferase-like, transcript variant X3
erythroblast NAD(P)(+)--arginine ADP-ribosyltransferase-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins
erythroblast NAD(P)(+)--arginine ADP-ribosyltransferase-like, transcript variant X7
erythroblast NAD(P)(+)--arginine ADP-ribosyltransferase-like, transcript variant X9
erythroblast NAD(P)(+)--arginine ADP-ribosyltransferase-like, transcript variant X8
ecto-ADP-ribosyltransferase 5-like, transcript variant X2
ecto-ADP-ribosyltransferase 5-like, transcript variant X1
transfer RNA lysine (anticodon UUU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA glutamic acid (anticodon UUC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA threonine (anticodon AGU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA arginine (anticodon UCU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
NACHT, LRR and PYD domains-containing protein 14-like; Derived by automated computational analysis using gene prediction method: Gnomon.
NACHT, LRR and PYD domains-containing protein 14-like, transcript variant X1
NACHT, LRR and PYD domains-containing protein 14-like, transcript variant X2
NACHT, LRR and PYD domains-containing protein 14-like isoform X1
ribonuclease inhibitor-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC127566655; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC127566656; Derived by automated computational analysis using gene prediction method: Gnomon.
transfer RNA asparagine (anticodon GUU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
uncharacterized LOC127566659; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC127566646; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 33 Proteins
leupaxin-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 15 Proteins
zinc finger protein 692-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
DPY30 domain containing 2; Derived by automated computational analysis using gene prediction method: Gnomon.
DPY30 domain containing 2, transcript variant X1
DPY30 domain containing 2, transcript variant X2
transfer RNA serine (anticodon GCU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA valine (anticodon CAC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA valine (anticodon UAC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA arginine (anticodon CCU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.