Pristis pectinata isolate sPriPec2 chromosome 41, sPriPec2.1.pri, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Batoidea; Rhinopristiformes; Pristidae; Pristis.
REFSEQ INFORMATION: The reference sequence is identical to\nCM019895.1.\nAssembly name: sPriPec2.1.pri\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2019/12/19. The original whole-genome shotgun project has the\naccession WOXU00000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 18-NOV-2019\nAssembly Method :: FALCON v. DNANexus 1.9.0; FALCON-Unzip v.\n DNANexus 1.0.6; purge_haplotigs v.\n v1.0.3+ 1.Nov.2018; scaff10x v. 4.1.0;\n Bionano Solve DLS v. 3.2.1; Salsa HiC v.\n 2.2; Arrow smrtanalysis Pacbio polishing\n & gap filling v. 6.0.0.47841; longranger\n align v. 2.2.2; freebayes Illumina\n polishing v. 1.3.1; gEVAL manual curation\n v. 2019-11-18; VGP assembly pipeline\n individual v. 1.5\nAssembly Name :: sPriPec2.pri\nDiploid :: Principal pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 61.91x\nSequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq;\n Arima Genomics Hi-C; Bionano Genomics DLS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Updated annotation\nAnnotation Name :: GCF_009764475.1-RS_2023_02\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 02/25/2023\n##Genome-Annotation-Data-END##
NACHT, LRR and PYD domains-containing protein 12-like; Derived by automated computational analysis using gene prediction method: Gnomon.
NACHT, LRR and PYD domains-containing protein 12-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC127566463; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC127566456; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC127566456, transcript variant X2
COORDINATES: polyA evidence [ECO:0006239]
uncharacterized LOC127566456, transcript variant X1
beta-1,3-galactosyltransferase 5-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins
uncharacterized LOC127566461; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC127566458; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC127566458, transcript variant X2
uncharacterized LOC127566458, transcript variant X1
uncharacterized LOC127566457; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC127566457, transcript variant X1
uncharacterized LOC127566457, transcript variant X2
uncharacterized LOC127566457, transcript variant X3
uncharacterized LOC127566459; Derived by automated computational analysis using gene prediction method: Gnomon.
NACHT, LRR and PYD domains-containing protein 3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
NACHT, LRR and PYD domains-containing protein 3-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
uncharacterized LOC127566462; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins
NLR family CARD domain-containing protein 3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
NLR family CARD domain-containing protein 3-like, transcript variant X2
NLR family CARD domain-containing protein 3-like, transcript variant X1
NLR family CARD domain-containing protein 3-like
uncharacterized LOC127566455; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC127566460; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC127566460, transcript variant X2
uncharacterized LOC127566460, transcript variant X1
transfer RNA serine (anticodon UGA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA asparagine (anticodon GUU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA arginine (anticodon CCG); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA valine (anticodon UAC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA glycine (anticodon CCC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
probable G-protein coupled receptor 139; Derived by automated computational analysis using gene prediction method: Gnomon.
EEF1A lysine methyltransferase 3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
protein tweety homolog 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
RNA binding protein fox-1 homolog 3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
RNA binding protein fox-1 homolog 3-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 31 Proteins
Fc receptor-like protein 5; Derived by automated computational analysis using gene prediction method: Gnomon.
Fc receptor-like protein 5, transcript variant X1
Fc receptor-like protein 5, transcript variant X2
immunoglobulin superfamily member 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
immunoglobulin superfamily member 1-like, transcript variant X1
immunoglobulin superfamily member 1-like, transcript variant X2
immunoglobulin superfamily member 1-like isoform X1
immunoglobulin superfamily member 1-like isoform X2
uncharacterized LOC127566448; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC127587585; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC127566449; Derived by automated computational analysis using gene prediction method: Gnomon.
immunoglobulin superfamily member 1-like, transcript variant X4
immunoglobulin superfamily member 1-like, transcript variant X3
immunoglobulin superfamily member 1-like, transcript variant X5
immunoglobulin superfamily member 1-like, transcript variant X6
immunoglobulin superfamily member 1-like, transcript variant X7
uncharacterized LOC127566443; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC127566443, transcript variant X2
uncharacterized LOC127566443, transcript variant X1
uncharacterized protein LOC127566443 isoform X2
uncharacterized protein LOC127566443 isoform X1
flavin-containing monooxygenase 5-like; Derived by automated computational analysis using gene prediction method: Gnomon.
flavin-containing monooxygenase 5-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 51 Proteins
flavin-containing monooxygenase 5-like, transcript variant X1
flavin-containing monooxygenase 5-like, transcript variant X7
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 22 Proteins
flavin-containing monooxygenase 5-like, transcript variant X5
flavin-containing monooxygenase 5-like, transcript variant X6
flavin-containing monooxygenase 5-like isoform X5
flavin-containing monooxygenase 5-like isoform X1
flavin-containing monooxygenase 5-like isoform X4
flavin-containing monooxygenase 5-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
flavin-containing monooxygenase 5-like, transcript variant X4
flavin-containing monooxygenase 5-like isoform X2
flavin-containing monooxygenase 5-like isoform X3
scavenger receptor cysteine-rich type 1 protein M130-like; Derived by automated computational analysis using gene prediction method: Gnomon.
scavenger receptor cysteine-rich type 1 protein M130-like, transcript variant X2
scavenger receptor cysteine-rich type 1 protein M130-like, transcript variant X5
scavenger receptor cysteine-rich type 1 protein M130-like, transcript variant X4
scavenger receptor cysteine-rich type 1 protein M130-like, transcript variant X1
scavenger receptor cysteine-rich type 1 protein M130-like, transcript variant X3
uncharacterized protein LOC127566444 isoform X2
uncharacterized protein LOC127566444 isoform X1
uncharacterized protein LOC127566444 isoform X3
scavenger receptor cysteine-rich type 1 protein M130-like isoform X4
uncharacterized LOC127566442; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC127566442, transcript variant X6
uncharacterized LOC127566442, transcript variant X1
uncharacterized LOC127566442, transcript variant X3
uncharacterized LOC127566442, transcript variant X2
uncharacterized LOC127566442, transcript variant X4
uncharacterized LOC127566442, transcript variant X5
uncharacterized protein LOC127566442 isoform X2
uncharacterized protein LOC127566442 isoform X1
uncharacterized LOC127566442, transcript variant X7
uncharacterized protein LOC127566442 isoform X3
neuronal pentraxin-2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins
ECSIT signaling integrator; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 2 Proteins
evolutionarily conserved signaling intermediate in Toll pathway, mitochondrial
folliculin; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC127587589; Derived by automated computational analysis using gene prediction method: Gnomon.
tectonic-3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC127566432; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC127566432, transcript variant X8
uncharacterized LOC127566432, transcript variant X9
uncharacterized LOC127566432, transcript variant X1
uncharacterized LOC127566432, transcript variant X3
uncharacterized LOC127566432, transcript variant X6
uncharacterized LOC127566432, transcript variant X10
uncharacterized LOC127566432, transcript variant X2
uncharacterized LOC127566432, transcript variant X7
uncharacterized LOC127566432, transcript variant X5
uncharacterized LOC127566432, transcript variant X12
uncharacterized LOC127566432, transcript variant X11
uncharacterized protein LOC127566432 isoform X8
uncharacterized protein LOC127566432 isoform X9
uncharacterized protein LOC127566432 isoform X1
uncharacterized protein LOC127566432 isoform X3
uncharacterized protein LOC127566432 isoform X6
uncharacterized protein LOC127566432 isoform X10
uncharacterized protein LOC127566432 isoform X2
uncharacterized protein LOC127566432 isoform X7
uncharacterized protein LOC127566432 isoform X5
uncharacterized protein LOC127566432 isoform X12
uncharacterized protein LOC127566432 isoform X11
uncharacterized LOC127566435; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC127566432, transcript variant X4
uncharacterized protein LOC127566432 isoform X4
uncharacterized LOC127587591; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC127566465; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC127566465, transcript variant X1
uncharacterized LOC127566465, transcript variant X3
uncharacterized protein LOC127566465 isoform X1
uncharacterized protein LOC127566465 isoform X3
uncharacterized LOC127566465, transcript variant X2
uncharacterized protein LOC127566465 isoform X2
uncharacterized LOC127566464; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC127566464, transcript variant X1
uncharacterized LOC127566464, transcript variant X4
uncharacterized LOC127566464, transcript variant X8
uncharacterized LOC127566464, transcript variant X7
uncharacterized LOC127566464, transcript variant X3
uncharacterized LOC127566464, transcript variant X5
uncharacterized LOC127566464, transcript variant X6
uncharacterized LOC127566464, transcript variant X2
uncharacterized protein LOC127566464 isoform X1
uncharacterized protein LOC127566464 isoform X3
uncharacterized protein LOC127566464 isoform X4
uncharacterized protein LOC127566464 isoform X5
uncharacterized protein LOC127566464 isoform X6
uncharacterized protein LOC127566464 isoform X7
uncharacterized protein LOC127566464 isoform X2
uncharacterized LOC127566438; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC127566438, transcript variant X5
uncharacterized LOC127566438, transcript variant X4
uncharacterized LOC127566438, transcript variant X1
uncharacterized LOC127566438, transcript variant X8
uncharacterized LOC127566438, transcript variant X7
uncharacterized LOC127566438, transcript variant X2
uncharacterized LOC127566438, transcript variant X3
uncharacterized protein LOC127566438 isoform X1
uncharacterized LOC127566438, transcript variant X6
uncharacterized protein LOC127566438 isoform X2
uncharacterized LOC127566439; Derived by automated computational analysis using gene prediction method: Gnomon.