Streptomyces globosus strain LZH-48 plasmid unnamed1, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Kitasatosporales; Streptomycetaceae; Streptomyces.
Draft genome Sequence of streptomyces globosus LZH-48
Submitted (03-JAN-2018) Institute of Biophysics, Dezhou University, 566 DaXuexi RD, Dezhou, Shandong 253023, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP030863.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRT Portal v. version 2.2.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 110.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/05/2023 02:51:28\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,664\nCDSs (total) :: 6,569\nGenes (coding) :: 6,446\nCDSs (with protein) :: 6,446\nGenes (RNA) :: 95\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 71\nncRNAs :: 3\nPseudo Genes (total) :: 123\nCDSs (without protein) :: 123\nPseudo Genes (ambiguous residues) :: 0 of 123\nPseudo Genes (frameshifted) :: 41 of 123\nPseudo Genes (incomplete) :: 106 of 123\nPseudo Genes (internal stop) :: 9 of 123\nPseudo Genes (multiple problems) :: 32 of 123\nCRISPR Arrays :: 5\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_018523373.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
sigma-70 family RNA polymerase sigma factor
COORDINATES: protein motif:HMM:NF037054.2
COORDINATES: protein motif:HMM:NF024432.2
COORDINATES: similar to AA sequence:RefSeq:WP_014043678.1
COORDINATES: similar to AA sequence:RefSeq:WP_018847750.1
COORDINATES: protein motif:HMM:NF013757.2
IclR family transcriptional regulator C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF017885.2
COORDINATES: similar to AA sequence:RefSeq:WP_003963817.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076612357.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003963880.1
COORDINATES: similar to AA sequence:RefSeq:WP_018555009.1
COORDINATES: protein motif:HMM:NF041492.1
COORDINATES: protein motif:HMM:NF015736.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
DnaB-like helicase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004993653.1
COORDINATES: similar to AA sequence:RefSeq:WP_007505818.1
COORDINATES: protein motif:HMM:NF013964.2
COORDINATES: similar to AA sequence:RefSeq:WP_014158477.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_014140718.1
COORDINATES: similar to AA sequence:RefSeq:WP_019061744.1
GO:0004519 - endonuclease activity [Evidence IEA]
HNH endonuclease signature motif containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014677516.1
COORDINATES: similar to AA sequence:RefSeq:WP_011109722.1
COORDINATES: similar to AA sequence:RefSeq:WP_007830780.1
COORDINATES: similar to AA sequence:RefSeq:WP_018554990.1
COORDINATES: similar to AA sequence:RefSeq:WP_018554992.1
COORDINATES: similar to AA sequence:RefSeq:WP_018554993.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677508.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677507.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677503.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018555000.1
COORDINATES: similar to AA sequence:RefSeq:WP_018555001.1
GO:0008270 - zinc ion binding [Evidence IEA]
RRQRL motif-containing zinc-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011109708.1
COORDINATES: similar to AA sequence:RefSeq:WP_018893052.1
COORDINATES: similar to AA sequence:RefSeq:WP_019074384.1
COORDINATES: similar to AA sequence:RefSeq:WP_010361188.1
COORDINATES: similar to AA sequence:RefSeq:WP_010645459.1
COORDINATES: similar to AA sequence:RefSeq:WP_019329442.1
COORDINATES: similar to AA sequence:RefSeq:WP_018554949.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016469673.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003954247.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018844947.1
COORDINATES: similar to AA sequence:RefSeq:WP_018825457.1
COORDINATES: similar to AA sequence:RefSeq:WP_009741112.1
COORDINATES: similar to AA sequence:RefSeq:WP_018523902.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019074365.1
COORDINATES: similar to AA sequence:RefSeq:WP_018523908.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677422.1
COORDINATES: similar to AA sequence:RefSeq:WP_007268373.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014156486.1
COORDINATES: similar to AA sequence:RefSeq:WP_011026834.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007492707.1
COORDINATES: similar to AA sequence:RefSeq:WP_008742123.1
GO:0045027 - DNA end binding [Evidence IEA]
GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008735913.1
COORDINATES: protein motif:HMM:NF039695.1
COORDINATES: protein motif:HMM:TIGR04222.1
TIGR04222 domain-containing membrane protein
COORDINATES: protein motif:HMM:NF019886.2
COORDINATES: similar to AA sequence:RefSeq:WP_019979821.1
COORDINATES: similar to AA sequence:RefSeq:WP_020124228.1
COORDINATES: similar to AA sequence:RefSeq:WP_018385995.1
COORDINATES: similar to AA sequence:RefSeq:WP_015506672.1
COORDINATES: similar to AA sequence:RefSeq:WP_018894256.1
COORDINATES: similar to AA sequence:RefSeq:WP_011039366.1
COORDINATES: similar to AA sequence:RefSeq:WP_011039365.1
COORDINATES: similar to AA sequence:RefSeq:WP_003979129.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011039363.1
COORDINATES: similar to AA sequence:RefSeq:WP_006374535.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006374519.1
COORDINATES: similar to AA sequence:RefSeq:WP_018523511.1
COORDINATES: similar to AA sequence:RefSeq:WP_010471337.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677441.1
COORDINATES: similar to AA sequence:RefSeq:WP_019329412.1
COORDINATES: similar to AA sequence:RefSeq:WP_018523893.1
COORDINATES: similar to AA sequence:RefSeq:WP_014043463.1