Methanothermobacter tenebrarum strain RMAS plasmid pRMAS01, complete sequence.
Archaea; Euryarchaeota; Methanomada group; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanothermobacter.
Complete genome of Methanothermobacter tenebrarum strain RMAS
Submitted (01-APR-2022) Contact:Kohei Nakamura Gifu University; 1-1 Yanagido, Gifu 5011193, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nAP025699.1.\nAnnotated by DFAST https://dfast.ddbj.nig.ac.jp/\n\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Phred; Phrap; Consed\nGenome Coverage :: 10.5x\nSequencing Technology :: ThermoFisher ABI3730xl\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/15/2023 01:33:22\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,670\nCDSs (total) :: 1,625\nGenes (coding) :: 1,611\nCDSs (with protein) :: 1,611\nGenes (RNA) :: 45\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 40\nncRNAs :: 2\nPseudo Genes (total) :: 14\nCDSs (without protein) :: 14\nPseudo Genes (ambiguous residues) :: 0 of 14\nPseudo Genes (frameshifted) :: 4 of 14\nPseudo Genes (incomplete) :: 7 of 14\nPseudo Genes (internal stop) :: 4 of 14\nPseudo Genes (multiple problems) :: 1 of 14\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Methanothermobacter tenebrarum
COORDINATES: protein motif:HMM:NF016302.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF016214.2
COORDINATES: protein motif:HMM:NF013508.2
COORDINATES: protein motif:HMM:NF019976.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
nuclease-related domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008514923.1
MBL fold metallo-hydrolase RNA specificity domain-containing protein
COORDINATES: protein motif:HMM:NF014442.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008583816.1
COORDINATES: protein motif:HMM:NF025637.2
COORDINATES: protein motif:HMM:TIGR02928.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]