Citrobacter sedlakii strain 3347689II plasmid p3347089II_2, complete sequence.
type: Entry
definition: Citrobacter sedlakii strain 3347689II plasmid p3347089II_2, complete sequence.
sequence version: NZ_CP071072.1
sequence date: 2022-12-07
sequence: sequence
division: CON
label: NZ_CP071072.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN17736025
keyword: RefSeq
source: Citrobacter sedlakii
organism: Citrobacter sedlakii
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP071072.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 170x\nSequencing Technology :: Illumina NovaSeq; Oxford Nanopore MiniION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/07/2022 04:55:58\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,755\nCDSs (total) :: 4,639\nGenes (coding) :: 4,535\nCDSs (with protein) :: 4,535\nGenes (RNA) :: 116\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 86\nncRNAs :: 8\nPseudo Genes (total) :: 104\nCDSs (without protein) :: 104\nPseudo Genes (ambiguous residues) :: 0 of 104\nPseudo Genes (frameshifted) :: 35 of 104\nPseudo Genes (incomplete) :: 71 of 104\nPseudo Genes (internal stop) :: 21 of 104\nPseudo Genes (multiple problems) :: 17 of 104\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 44104
topology: circular
so has quality: SO_0000988
location: 1..44104
location: region:1-44104:1
RO_0002162: 67826

NZ_CP071072
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN17736025
type: BioSample
SIO_000068: biosample

1
title: Polycolonization with MDR bacteria in a patient transferred from intensive care unit
author: Moser, A.I.
author: Campos-Madueno, E.I.
author: Endimiani, A.
journal: Unpublished

2
title: Direct Submission
author: Moser, A.I.
author: Campos-Madueno, E.I.
author: Endimiani, A.
journal: Submitted (02-FEB-2021) Institute for Infectious Diseases, University of Bern, Friedbuehlstrasse 51, Bern 3001, Switzerland

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:44104:1
position: 44104
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-44104:1:source
so part of: sequence
organism: Citrobacter sedlakii
mol type: genomic DNA
strain: 3347689II
isolation source: outer malleolus
host: Homo sapiens
plasmid: p3347089II_2
country: Switzerland
collection date: 2020
collected by: Institute for Infectious Diseases Bern

67826
type: Taxonomy
SIO_000068: taxonomy

JY391_RS23440
type: Gene
subclass of: SO_0000704
RO_0002162: 67826
locus tag: JY391_RS23440
old locus tag: JY391_23440
so part of: sequence
location: complement(join(43705..44104,1..461))
location: region:1-44104:-1
so has part: feature:1-461:-1:exon
so has part: feature:43705-44104:-1:exon
subclass of: SO_0000010

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:44104:-1
position: 44104
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-461:-1:exon

position:461:-1
position: 461
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:43705-44104:-1:exon

position:43705:-1
position: 43705
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

JY391_RS23440
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 67826
locus tag: JY391_RS23440
old locus tag: JY391_23440
EC number: 3.5.2.6
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: extended-spectrum class A beta-lactamase SHV-12
translation: MRYIRLCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTGASKRGARGIVALLGPNNKAERIVVIYLRDTPASMAERNQQIAGIGAALIEHWQR
SIO_010081: JY391_RS23440
subclass of: SO_0000673
so part of: JY391_RS23440
location: complement(join(43705..44104,1..461))
location: region:1-44104:-1
so has part: feature:1-461:-1:exon
so has part: feature:43705-44104:-1:exon

WP_002904004.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-461:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:43705-44104:-1:exon

JY391_RS23445
type: Gene
subclass of: SO_0000704
RO_0002162: 67826
locus tag: JY391_RS23445
old locus tag: JY391_23445
so part of: sequence
location: 598..1302
location: region:598-1302:1
so has part: feature:598-1302:1:exon
subclass of: SO_0000010

position:598:1
position: 598
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1302:1
position: 1302
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:598-1302:1:exon

JY391_RS23445
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 67826
locus tag: JY391_RS23445
old locus tag: JY391_23445
inference: COORDINATES: similar to AA sequence:RefSeq:YP_005221000.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS6-like element IS26 family transposase
translation: MNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTVDFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDVEHRQIKYRNNVIECDHGKLKRIINATLGFKSMKTAYATIKGIEVMRALRKGQASAFYYGDPLGEMRLVSRVFEM
SIO_010081: JY391_RS23445
subclass of: SO_0000673
so part of: JY391_RS23445
location: 598..1302
location: region:598-1302:1
so has part: feature:598-1302:1:exon

WP_001067858.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:598-1302:1:exon

JY391_RS23450
type: Gene
subclass of: SO_0000704
RO_0002162: 67826
locus tag: JY391_RS23450
old locus tag: JY391_23450
pseudo: true
so part of: sequence
location: complement(<1357..>1548)
location: region:1357-1548:-1
so has part: feature:1357-1548:-1:exon
subclass of: SO_0000010

position:1357:-1
position: 1357
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:1548:-1
position: 1548
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1357-1548:-1:exon

JY391_RS23450
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 67826
locus tag: JY391_RS23450
old locus tag: JY391_23450
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001513488.1
note: incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: PAS domain-containing protein
SIO_010081: JY391_RS23450
subclass of: SO_0000673
so part of: JY391_RS23450
location: complement(<1357..>1548)
location: region:1357-1548:-1
so has part: feature:1357-1548:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1357-1548:-1:exon

JY391_RS23455
type: Gene
subclass of: SO_0000704
RO_0002162: 67826
locus tag: JY391_RS23455
old locus tag: JY391_23455
so part of: sequence
location: complement(1601..2305)
location: region:1601-2305:-1
so has part: feature:1601-2305:-1:exon
subclass of: SO_0000010

position:1601:-1
position: 1601
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2305:-1
position: 2305
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1601-2305:-1:exon

JY391_RS23455
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 67826
locus tag: JY391_RS23455
old locus tag: JY391_23455
inference: COORDINATES: similar to AA sequence:RefSeq:YP_005221000.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS6-like element IS26 family transposase
translation: MNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTVDFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDVEHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIKGIEVMRALRKGQASAFYYGDPLGEMRLVSRVFEM
SIO_010081: JY391_RS23455
subclass of: SO_0000673
so part of: JY391_RS23455
location: complement(1601..2305)
location: region:1601-2305:-1
so has part: feature:1601-2305:-1:exon

WP_001067855.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1601-2305:-1:exon

JY391_RS23460
type: Gene
subclass of: SO_0000704
RO_0002162: 67826
locus tag: JY391_RS23460
old locus tag: JY391_23460
so part of: sequence
location: 2633..2902
location: region:2633-2902:1
so has part: feature:2633-2902:1:exon
subclass of: SO_0000010

position:2633:1
position: 2633
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2902:1
position: 2902
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2633-2902:1:exon

JY391_RS23460
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 67826
locus tag: JY391_RS23460
old locus tag: JY391_23460
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000339857.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDAPDYGKQVNFADGPDYGKQVNFTGGRECGEQVNFADGPDYGKQVNFAGGRDCGKQVNFADGPDCGKQVNFAGGRECGEQVNFADGPD
SIO_010081: JY391_RS23460
subclass of: SO_0000673
so part of: JY391_RS23460
location: 2633..2902
location: region:2633-2902:1
so has part: feature:2633-2902:1:exon

WP_000339857.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2633-2902:1:exon

JY391_RS23465
type: Gene
subclass of: SO_0000704
RO_0002162: 67826
locus tag: JY391_RS23465
old locus tag: JY391_23465
so part of: sequence
location: complement(3079..3945)
location: region:3079-3945:-1
so has part: feature:3079-3945:-1:exon
subclass of: SO_0000010

position:3079:-1
position: 3079
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3945:-1
position: 3945
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3079-3945:-1:exon

JY391_RS23465
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 67826
locus tag: JY391_RS23465
old locus tag: JY391_23465
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004118283.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MGKRSSSVLNYPLVDKVQIFPVDKYRDSLQFLFSLSLWVGKNLPIGIEMDTQALLPATKTFKKRASIKQSNELTEAAYYLPLQAKRVLWLCLMQAYFNDSQEDDSDVLPLFKISVSDYVKYFNVATSVASRDVKAGVNALGESTVTFYPKEGEFEEVKRPWLAEAGMKRGRGSWQIEFNYKVMPFLVGLTSQFTTYSLYDCGQLNSVRVIRLYESLCQFRSTGVWITTHDWLCERFMLPASQKNNIAEMKRTFLEPALKKINEKTPLKVTYTTEEDGRLLFNFLDKKQ
SIO_010081: JY391_RS23465
subclass of: SO_0000673
so part of: JY391_RS23465
location: complement(3079..3945)
location: region:3079-3945:-1
so has part: feature:3079-3945:-1:exon

WP_004118283.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3079-3945:-1:exon

JY391_RS23470
type: Gene
subclass of: SO_0000704
RO_0002162: 67826
locus tag: JY391_RS23470
old locus tag: JY391_23470
so part of: sequence
location: 4475..4579
location: region:4475-4579:1
so has part: feature:4475-4579:1:exon
subclass of: SO_0000010

position:4475:1
position: 4475
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4579:1
position: 4579
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4475-4579:1:exon

JY391_RS23470
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 67826
locus tag: JY391_RS23470
old locus tag: JY391_23470
inference: COORDINATES: similar to AA sequence:RefSeq:YP_005229618.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRSFTIMSLLETFLTASQGATILFLAMLIYWQKR
SIO_010081: JY391_RS23470
subclass of: SO_0000673
so part of: JY391_RS23470
location: 4475..4579
location: region:4475-4579:1
so has part: feature:4475-4579:1:exon

WP_032409716.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4475-4579:1:exon

JY391_RS23475
type: Gene
subclass of: SO_0000704
RO_0002162: 67826
locus tag: JY391_RS23475
old locus tag: JY391_23475
so part of: sequence
location: 4708..4965
location: region:4708-4965:1
so has part: feature:4708-4965:1:exon
subclass of: SO_0000010

position:4708:1
position: 4708
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4965:1
position: 4965
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4708-4965:1:exon

JY391_RS23475
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 67826
locus tag: JY391_RS23475
old locus tag: JY391_23475
inference: COORDINATES: similar to AA sequence:RefSeq:YP_005229619.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKLETIQIDNTVRSGLNSFTDGVIIRDTKVLITLNLPDGQKTTIEGEWRHMSDANRLSERITMLQHAIYEQYEEYRADIPVSWSR
SIO_010081: JY391_RS23475
subclass of: SO_0000673
so part of: JY391_RS23475
location: 4708..4965
location: region:4708-4965:1
so has part: feature:4708-4965:1:exon

WP_000764642.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4708-4965:1:exon

JY391_RS23480
type: Gene
subclass of: SO_0000704
RO_0002162: 67826
locus tag: JY391_RS23480
old locus tag: JY391_23480
so part of: sequence
location: complement(5023..5799)
location: region:5023-5799:-1
so has part: feature:5023-5799:-1:exon
subclass of: SO_0000010

position:5023:-1
position: 5023
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5799:-1
position: 5799
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5023-5799:-1:exon

JY391_RS23480
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 67826
locus tag: JY391_RS23480
old locus tag: JY391_23480
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000015958.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific integrase
translation: MSGLLSYSHPQQPAQMPVAIDYPAALALRQMALVQDELPKYLLAPEVSALLHYVPDLHRKMLLATLWNTGARINEALALTRGDFSLVPPYPFVQLATLKQRTEKAARTAGRAPAGSQAHRLVPLSDHHYVSQLQMMVATLKIPLERRNKRTGRTEKARIWDITDRTVRTWIGEAVEAAAVDGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKVFALDVAARHRVQFQMPEADAVAMLKGNI
SIO_010081: JY391_RS23480
subclass of: SO_0000673
so part of: JY391_RS23480
location: complement(5023..5799)
location: region:5023-5799:-1
so has part: feature:5023-5799:-1:exon

WP_000015958.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5023-5799:-1:exon

JY391_RS23485
type: Gene
subclass of: SO_0000704
RO_0002162: 67826
locus tag: JY391_RS23485
old locus tag: JY391_23485
so part of: sequence
location: complement(5796..6539)
location: region:5796-6539:-1
so has part: feature:5796-6539:-1:exon
subclass of: SO_0000010

position:5796:-1
position: 5796
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6539:-1
position: 6539
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5796-6539:-1:exon

JY391_RS23485
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 67826
locus tag: JY391_RS23485
old locus tag: JY391_23485
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016243889.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTDIQAATESIVAATSHPVSVQLINQGAGIWGNVATGLITGLLTGGITLTGIWLTHYFTLKRERQASEDKMKKELHYIATELVFMLERYAEGCFRVVTDDGQDDDAPQPERKAVTNYPELNLIDVSGDWRTLEPRLMYRIRELPVLQDEAHRAIAYAAEYSDPPWHKDYFRERQYQFTRLGINAVILAVRLRKATGMPETRLTGHDEWSAVSVFRKVWRRERALRAAEATRNREWNQLVIPDGMSNQ
SIO_010081: JY391_RS23485
subclass of: SO_0000673
so part of: JY391_RS23485
location: complement(5796..6539)
location: region:5796-6539:-1
so has part: feature:5796-6539:-1:exon

WP_000129823.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5796-6539:-1:exon

JY391_RS23490
type: Gene
subclass of: SO_0000704
RO_0002162: 67826
locus tag: JY391_RS23490
old locus tag: JY391_23490
so part of: sequence
location: complement(6590..6940)
location: region:6590-6940:-1
so has part: feature:6590-6940:-1:exon
subclass of: SO_0000010

position:6590:-1
position: 6590
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6940:-1
position: 6940
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6590-6940:-1:exon

JY391_RS23490
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 67826
locus tag: JY391_RS23490
old locus tag: JY391_23490
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000493378.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MFTAFNERNDFSYAFEKIRNAISAPGENNLYAATELGLGILLRKYEQFRQELDAAGELGNWEYDLDTYNHCIAVLQRYFTGNPSGLTERDARIYSHYLQTEHKRFVKLAEELAAGR
SIO_010081: JY391_RS23490
subclass of: SO_0000673
so part of: JY391_RS23490
location: complement(6590..6940)
location: region:6590-6940:-1
so has part: feature:6590-6940:-1:exon

WP_000493378.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6590-6940:-1:exon

JY391_RS23495
type: Gene
subclass of: SO_0000704
RO_0002162: 67826
gene: vapB
locus tag: JY391_RS23495
old locus tag: JY391_23495
so part of: sequence
location: 7514..7744
location: region:7514-7744:1
so has part: feature:7514-7744:1:exon
subclass of: SO_0000010

position:7514:1
position: 7514
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7744:1
position: 7744
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7514-7744:1:exon

JY391_RS23495
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 67826
gene: vapB
locus tag: JY391_RS23495
old locus tag: JY391_23495
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004213073.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system VapB family antitoxin
translation: MRTVSIFKNGNNRAIRLPRDLDFDGVSELEIVREGDSIILRPVRPTWGSFAQLDRADPDFMAEREDVVSDEGRFEP
SIO_010081: JY391_RS23495
subclass of: SO_0000673
so part of: JY391_RS23495
location: 7514..7744
location: region:7514-7744:1
so has part: feature:7514-7744:1:exon

WP_001261276.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7514-7744:1:exon

JY391_RS23500
type: Gene
subclass of: SO_0000704
RO_0002162: 67826
locus tag: JY391_RS23500
old locus tag: JY391_23500
so part of: sequence
location: 7741..8157
location: region:7741-8157:1
so has part: feature:7741-8157:1:exon
subclass of: SO_0000010

position:7741:1
position: 7741
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8157:1
position: 8157
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7741-8157:1:exon

JY391_RS23500
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 67826
locus tag: JY391_RS23500
old locus tag: JY391_23500
inference: COORDINATES: similar to AA sequence:RefSeq:YP_005229630.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system VapC family toxin
translation: MKKTWMLDTNICSFIMREQPAAVLKRLEQAVLRGDRIVVSAVTYAEMRFGATGPKASPRHIQLVDAFCARLDAVLPWDRAAVDATTDIRVALRLAGTPIGPNDTAIAGHAIAAGAILVTNNVREFARVPGLVLEDWVK
SIO_010081: JY391_RS23500
subclass of: SO_0000673
so part of: JY391_RS23500
location: 7741..8157
location: region:7741-8157:1
so has part: feature:7741-8157:1:exon

WP_000754566.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7741-8157:1:exon

JY391_RS23505
type: Gene
subclass of: SO_0000704
RO_0002162: 67826
locus tag: JY391_RS23505
old locus tag: JY391_23505
pseudo: true
so part of: sequence
location: 8361..>9217
location: region:8361-9217:1
so has part: feature:8361-9217:1:exon
subclass of: SO_0000010

position:8361:1
position: 8361
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9217:1
position: 9217
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8361-9217:1:exon

JY391_RS23505
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 67826
locus tag: JY391_RS23505
old locus tag: JY391_23505
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611389.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS3-like element ISEc15 family transposase
SIO_010081: JY391_RS23505
subclass of: SO_0000673
so part of: JY391_RS23505
location: 8361..>9217
location: region:8361-9217:1
so has part: feature:8361-9217:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8361-9217:1:exon

JY391_RS23510
type: Gene
subclass of: SO_0000704
RO_0002162: 67826
locus tag: JY391_RS23510
old locus tag: JY391_23510
so part of: sequence
location: 9499..10575
location: region:9499-10575:1
so has part: feature:9499-10575:1:exon
subclass of: SO_0000010

position:9499:1
position: 9499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10575:1
position: 10575
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9499-10575:1:exon

JY391_RS23510
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 67826
locus tag: JY391_RS23510
old locus tag: JY391_23510
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000907654.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS110 family transposase
translation: MVDKVTEAAVVGGVDTHKDLHVAAVVDQNNKVLGTQYFSTTRQGYRQMLAWMTSFGTLKRIGVECTGTYGSGLLRYFQNAGLEVLEVTAPDRMERRKRGKSDTIDAECAAHAAFSGIRTVTPKTRDGMIESLRVLKTCRKTAISARRVALQIIHSNIISAPDELREQLRNMTRMQLIRTLGSWRPDASEYRNVTNVYRISLKSLARRYLELHDEIADLDVMIAAIVDELAPELIKRNAIGYESASQLLITAGDNPQRLRSESGFAALCGVSPVPVSSGKTNRYRLNRGGDRAANSALHIIAIGRLRTDAKTKEYVARRVAEGHTKMEAIRCLKRYISREVYTLLRNQNRRINSIPITA
SIO_010081: JY391_RS23510
subclass of: SO_0000673
so part of: JY391_RS23510
location: 9499..10575
location: region:9499-10575:1
so has part: feature:9499-10575:1:exon

WP_000227969.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9499-10575:1:exon

JY391_RS23515
type: Gene
subclass of: SO_0000704
RO_0002162: 67826
locus tag: JY391_RS23515
old locus tag: JY391_23515
pseudo: true
so part of: sequence
location: complement(<10595..>10696)
location: region:10595-10696:-1
so has part: feature:10595-10696:-1:exon
subclass of: SO_0000010

position:10595:-1
position: 10595
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:10696:-1
position: 10696
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10595-10696:-1:exon

JY391_RS23515
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 67826
locus tag: JY391_RS23515
old locus tag: JY391_23515
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011711650.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
GO process: GO:0006313 - transposition, DNA-mediated [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: Tn3 family transposase
SIO_010081: JY391_RS23515
subclass of: SO_0000673
so part of: JY391_RS23515
location: complement(<10595..>10696)
location: region:10595-10696:-1
so has part: feature:10595-10696:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10595-10696:-1:exon

JY391_RS23520
type: Gene
subclass of: SO_0000704
RO_0002162: 67826
locus tag: JY391_RS23520
old locus tag: JY391_23520
pseudo: true
so part of: sequence
location: 11216..>11299
location: region:11216-11299:1
so has part: feature:11216-11299:1:exon
subclass of: SO_0000010

position:11216:1
position: 11216
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11299:1
position: 11299
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11216-11299:1:exon

JY391_RS23520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 67826
locus tag: JY391_RS23520
old locus tag: JY391_23520
inference: COORDINATES: similar to AA sequence:RefSeq:NP_460027.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: SOS response-associated peptidase
SIO_010081: JY391_RS23520
subclass of: SO_0000673
so part of: JY391_RS23520
location: 11216..>11299
location: region:11216-11299:1
so has part: feature:11216-11299:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11216-11299:1:exon

JY391_RS23875
type: Gene
subclass of: SO_0000704
RO_0002162: 67826
locus tag: JY391_RS23875
pseudo: true
so part of: sequence
location: complement(11357..>11428)
location: region:11357-11428:-1
so has part: feature:11357-11428:-1:exon
subclass of: SO_0000010

position:11357:-1
position: 11357
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11428:-1
position: 11428
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11357-11428:-1:exon

JY391_RS23875
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 67826
locus tag: JY391_RS23875
inference: COORDINATES: similar to AA sequence:RefSeq:YP_005220840.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: hypothetical protein
SIO_010081: JY391_RS23875
subclass of: SO_0000673
so part of: JY391_RS23875
location: complement(11357..>11428)
location: region:11357-11428:-1
so has part: feature:11357-11428:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11357-11428:-1:exon

JY391_RS23525
type: Gene
subclass of: SO_0000704
RO_0002162: 67826
locus tag: JY391_RS23525
old locus tag: JY391_23525
pseudo: true
so part of: sequence
location: complement(11462..>12649)
location: region:11462-12649:-1
so has part: feature:11462-12649:-1:exon
subclass of: SO_0000010

position:11462:-1
position: 11462
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12649:-1
position: 12649
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11462-12649:-1:exon

JY391_RS23525
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 67826
locus tag: JY391_RS23525
old locus tag: JY391_23525
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001138082.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: Tn3 family transposase
SIO_010081: JY391_RS23525
subclass of: SO_0000673
so part of: JY391_RS23525
location: complement(11462..>12649)
location: region:11462-12649:-1
so has part: feature:11462-12649:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11462-12649:-1:exon

JY391_RS23530
type: Gene
subclass of: SO_0000704
RO_0002162: 67826
locus tag: JY391_RS23530
old locus tag: JY391_23530
so part of: sequence
location: 12861..13565
location: region:12861-13565:1
so has part: feature:12861-13565:1:exon
subclass of: SO_0000010

position:12861:1
position: 12861
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13565:1
position: 13565
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12861-13565:1:exon

JY391_RS23530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 67826
locus tag: JY391_RS23530
old locus tag: JY391_23530
inference: COORDINATES: similar to AA sequence:RefSeq:YP_005221000.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS6-like element IS26 family transposase
translation: MNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTVDFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDVEHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIKGIEVMRALRKGQASAFYYGDPLGEMRLVSRVFEM
SIO_010081: JY391_RS23530
subclass of: SO_0000673
so part of: JY391_RS23530
location: 12861..13565
location: region:12861-13565:1
so has part: feature:12861-13565:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12861-13565:1:exon

JY391_RS23535
type: Gene
subclass of: SO_0000704
RO_0002162: 67826
locus tag: JY391_RS23535
old locus tag: JY391_23535
so part of: sequence
location: 13776..14981
location: region:13776-14981:1
so has part: feature:13776-14981:1:exon
subclass of: SO_0000010

position:13776:1
position: 13776
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14981:1
position: 14981
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13776-14981:1:exon

JY391_RS23535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 67826
locus tag: JY391_RS23535
old locus tag: JY391_23535
inference: COORDINATES: similar to AA sequence:RefSeq:YP_005229775.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MDNIEQLRKVATRAGKLLTSLSESIRQQKEELKLTEFYQEYSKAALYKLPKLSKGSVEYAVSEMEAGGYIFKKKPSGNTMKYAMTIQNVIDLYNHRKVPKYRDRFDKAFTIFVCNLKGGGSKTVSTASLSHAFRAHPQLLFEDLRILAIDFDPQASLTMFLSHENSVGLVENTAAQAMLQNVSREELLSDFIVPSIIPGVDVIPASIDDAFLAEGWKGLCEEHLPGKNIHAVLKENIIDKLQHDYDFIFLDSGPHLDAFLKNCIGAADLMLTPLPPATVDFHSSLKFVASLPALIDSIEMDGHTCNLIGNVGFMSKILNKSDHKICHSQAKEVFGADMLDMVLPRLDGFERCGETFDTVISANPATYDGSTEALKSAKSAAEDFAKAVFDRIEFIRTNGGM
SIO_010081: JY391_RS23535
subclass of: SO_0000673
so part of: JY391_RS23535
location: 13776..14981
location: region:13776-14981:1
so has part: feature:13776-14981:1:exon

WP_000368714.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13776-14981:1:exon

JY391_RS23540
type: Gene
subclass of: SO_0000704
RO_0002162: 67826
locus tag: JY391_RS23540
old locus tag: JY391_23540
so part of: sequence
location: 14981..15955
location: region:14981-15955:1
so has part: feature:14981-15955:1:exon
subclass of: SO_0000010

position:15955:1
position: 15955
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14981-15955:1:exon

JY391_RS23540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 67826
locus tag: JY391_RS23540
old locus tag: JY391_23540
inference: COORDINATES: similar to AA sequence:RefSeq:YP_005229774.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParB family protein
translation: MSNEKRKTIGRQLNTQASIAEMTDTGRSQVFTLKTGRKVTFRFVRVPASEVESKTFVNQENNGRDQLALTRESLKSIIQTIKFQQFFPCIGIKQSERIEILDGSRRRASAIFVRTGLDVMVTEEHLSADEARQLAKDIQTAKEHNLREIGLRLIALKESGFNQKEIAELEGLSQAKVTRALQAAAVPQDLISLFPVQSELSFSDYKLLLEVNEKLSEKGLTPEELIQSVSAQLDAILSEGERPEDEQKASILKLISQASQALIDPSPKEKSVVSPLWSFEEKDKFARKRVKGRTLTYEFSRMSKVIQDELDKAINEVLDRNLSQ
SIO_010081: JY391_RS23540
subclass of: SO_0000673
so part of: JY391_RS23540
location: 14981..15955
location: region:14981-15955:1
so has part: feature:14981-15955:1:exon

WP_000064119.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14981-15955:1:exon

JY391_RS23545
type: Gene
subclass of: SO_0000704
RO_0002162: 67826
locus tag: JY391_RS23545
old locus tag: JY391_23545
so part of: sequence
location: complement(16037..17308)
location: region:16037-17308:-1
so has part: feature:16037-17308:-1:exon
subclass of: SO_0000010

position:16037:-1
position: 16037
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17308:-1
position: 17308
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16037-17308:-1:exon

JY391_RS23545
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 67826
locus tag: JY391_RS23545
old locus tag: JY391_23545
inference: COORDINATES: similar to AA sequence:RefSeq:YP_005229773.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Y-family DNA polymerase
translation: MFALADVNSFYASCERVFRPDLKGKPIVVLSNNDGNVIARSAEAKPWIKMETPWFQIKNERYPEKIYAFSSNYELYASMLARVMNSLEELAPRVEQYSIDEMFLDLTGVEHCMELEDFGRQLRQHVYDCTHLTIGVGAGPTKTLAKSAQWASKEWKQFRGVLALTRGNPQRTRKLLSLQPVEEIWGVGNRIARKLNVLGIKTALDLALTNPAFIRKNFSVVLERTVRELNGESCLSLEEAPPTKQQIVCSRSFGVKITEYESLRQAICQHAERASEKLRKEHQYCRHISVFIKTSPFAIKEPYYGNVATEKLLTPTQDTRDIIAAATTALERIWRDGHRYAKAGVMLNDFTGSGVSQLQLFDERPPRPYSAELMKVLDGINNSGLGKVWFAGRGIAPEWQMKREMLSPAYTTRWSDIPSAKLA
SIO_010081: JY391_RS23545
subclass of: SO_0000673
so part of: JY391_RS23545
location: complement(16037..17308)
location: region:16037-17308:-1
so has part: feature:16037-17308:-1:exon

WP_001754953.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16037-17308:-1:exon

JY391_RS23550
type: Gene
subclass of: SO_0000704
RO_0002162: 67826
gene: umuD
locus tag: JY391_RS23550
old locus tag: JY391_23550
so part of: sequence
location: complement(17308..17739)
location: region:17308-17739:-1
so has part: feature:17308-17739:-1:exon
subclass of: SO_0000010

position:17739:-1
position: 17739
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17308-17739:-1:exon

JY391_RS23550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 67826
gene: umuD
locus tag: JY391_RS23550
old locus tag: JY391_23550
EC number: 2.7.7.7
inference: COORDINATES: similar to AA sequence:RefSeq:YP_005229772.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: translesion error-prone DNA polymerase V autoproteolytic subunit
translation: MKLQLFSTGKELPPQAHPLFADLASCGFPSPAADYVESDLDLHDYCIRHPSATYYLRASGDSMADGSLYNGDLLVVDSAEKPRHGDIVVASMQGEFTVKRLLLTPRLTLQPMNASWSPIYPDPDELDIFGVVTHIIHRPREMY
SIO_010081: JY391_RS23550
subclass of: SO_0000673
so part of: JY391_RS23550
location: complement(17308..17739)
location: region:17308-17739:-1
so has part: feature:17308-17739:-1:exon

WP_000776034.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17308-17739:-1:exon

JY391_RS23555
type: Gene
subclass of: SO_0000704
RO_0002162: 67826
gene: ltrA
locus tag: JY391_RS23555
old locus tag: JY391_23555
pseudo: true
so part of: sequence
location: 18145..19632
location: region:18145-19632:1
so has part: feature:18145-19632:1:exon
subclass of: SO_0000010

position:18145:1
position: 18145
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19632:1
position: 19632
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18145-19632:1:exon

JY391_RS23555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 67826
gene: ltrA
locus tag: JY391_RS23555
old locus tag: JY391_23555
inference: COORDINATES: similar to AA sequence:RefSeq:YP_005226014.1
GO function: GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0000373 - Group II intron splicing [Evidence IEA]
note: internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: group II intron reverse transcriptase/maturase
SIO_010081: JY391_RS23555
subclass of: SO_0000673
so part of: JY391_RS23555
location: 18145..19632
location: region:18145-19632:1
so has part: feature:18145-19632:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:18145-19632:1:exon

JY391_RS23560
type: Gene
subclass of: SO_0000704
RO_0002162: 67826
locus tag: JY391_RS23560
old locus tag: JY391_23560
so part of: sequence
location: 19784..20481
location: region:19784-20481:1
so has part: feature:19784-20481:1:exon
subclass of: SO_0000010

position:19784:1
position: 19784
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20481:1
position: 20481
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19784-20481:1:exon

JY391_RS23560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 67826
locus tag: JY391_RS23560
old locus tag: JY391_23560
inference: COORDINATES: similar to AA sequence:RefSeq:WP_086558268.1
ribosomal slippage: true
note: programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS1-like element IS1X3 family transposase
translation: MASISISCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRATARIMGVGLNTILRHFKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYVGAKSRQRWLFYAYGRMCRTVVARVFGERTLATLERLPGLLSAFEVVVWMTDGWPLYESRLKGELHVISKRYTQRIERHNQNLRQHLARLGRKSLSFSKSVALHDKVIGHYLNIKHYQ
SIO_010081: JY391_RS23560
subclass of: SO_0000673
so part of: JY391_RS23560
location: join(19784..20033,20033..20481)
location: region:19784-20481:1
so has part: feature:19784-20033:1:exon
so has part: feature:20033-20481:1:exon

WP_223229472.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19784-20033:1:exon

position:20033:1
position: 20033
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:20033-20481:1:exon

JY391_RS23565
type: Gene
subclass of: SO_0000704
RO_0002162: 67826
locus tag: JY391_RS23565
old locus tag: JY391_23565
pseudo: true
so part of: sequence
location: <20491..20799
location: region:20491-20799:1
so has part: feature:20491-20799:1:exon
subclass of: SO_0000010

position:20491:1
position: 20491
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:20799:1
position: 20799
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20491-20799:1:exon

JY391_RS23565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 67826
locus tag: JY391_RS23565
old locus tag: JY391_23565
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012561120.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: replication initiation protein
SIO_010081: JY391_RS23565
subclass of: SO_0000673
so part of: JY391_RS23565
location: <20491..20799
location: region:20491-20799:1
so has part: feature:20491-20799:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:20491-20799:1:exon

JY391_RS23570
type: Gene
subclass of: SO_0000704
RO_0002162: 67826
locus tag: JY391_RS23570
old locus tag: JY391_23570
so part of: sequence
location: complement(22436..23140)
location: region:22436-23140:-1
so has part: feature:22436-23140:-1:exon
subclass of: SO_0000010

position:22436:-1
position: 22436
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23140:-1
position: 23140
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22436-23140:-1:exon

JY391_RS23570
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 67826
locus tag: JY391_RS23570
old locus tag: JY391_23570
inference: COORDINATES: similar to AA sequence:RefSeq:YP_005221000.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS6-like element IS26 family transposase
translation: MNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTVDFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDVEHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIKGIEVMRALRKGQASAFYYGDPLGEMRLVSRVFEM
SIO_010081: JY391_RS23570
subclass of: SO_0000673
so part of: JY391_RS23570
location: complement(22436..23140)
location: region:22436-23140:-1
so has part: feature:22436-23140:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:22436-23140:-1:exon

JY391_RS23575
type: Gene
subclass of: SO_0000704
RO_0002162: 67826
locus tag: JY391_RS23575
old locus tag: JY391_23575
pseudo: true
so part of: sequence
location: complement(<23202..23282)
location: region:23202-23282:-1
so has part: feature:23202-23282:-1:exon
subclass of: SO_0000010

position:23202:-1
position: 23202
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:23282:-1
position: 23282
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23202-23282:-1:exon

JY391_RS23575
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 67826
locus tag: JY391_RS23575
old locus tag: JY391_23575
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000679427.1
GO component: GO:0016020 - membrane [Evidence IEA]
GO function: GO:0022857 - transmembrane transporter activity [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: SMR family transporter
SIO_010081: JY391_RS23575
subclass of: SO_0000673
so part of: JY391_RS23575
location: complement(<23202..23282)
location: region:23202-23282:-1
so has part: feature:23202-23282:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:23202-23282:-1:exon

JY391_RS23580
type: Gene
subclass of: SO_0000704
RO_0002162: 67826
gene: aadA1
locus tag: JY391_RS23580
old locus tag: JY391_23580
pseudo: true
so part of: sequence
location: complement(23399..24237)
location: region:23399-24237:-1
so has part: feature:23399-24237:-1:exon
subclass of: SO_0000010

position:23399:-1
position: 23399
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24237:-1
position: 24237
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23399-24237:-1:exon

JY391_RS23580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 67826
gene: aadA1
locus tag: JY391_RS23580
old locus tag: JY391_23580
inference: COORDINATES: similar to AA sequence:RefSeq:WP_048608579.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1
SIO_010081: JY391_RS23580
subclass of: SO_0000673
so part of: JY391_RS23580
location: complement(23399..24237)
location: region:23399-24237:-1
so has part: feature:23399-24237:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:23399-24237:-1:exon

JY391_RS23585
type: Gene
subclass of: SO_0000704
RO_0002162: 67826
gene: dfrA1
locus tag: JY391_RS23585
old locus tag: JY391_23585
so part of: sequence
location: complement(24330..24803)
location: region:24330-24803:-1
so has part: feature:24330-24803:-1:exon
subclass of: SO_0000010

position:24330:-1
position: 24330
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24803:-1
position: 24803
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24330-24803:-1:exon

JY391_RS23585
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 67826
gene: dfrA1
locus tag: JY391_RS23585
old locus tag: JY391_23585
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001355915.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: trimethoprim-resistant dihydrofolate reductase DfrA1
translation: MKLSLMVAISKNGVIGNGPDIPWSAKGEQLLFKAITYNQWLLVGRKTFESMGALPNRKYAVVTRSSFTSDNENVVIFPSIKDALTNLKKITDHVIVSGGGEIYKSLIDQVDTLHISTIDIEPEGDVYFPEIPSNFRPVFTQDFASNINYSYQIWQKG
SIO_010081: JY391_RS23585
subclass of: SO_0000673
so part of: JY391_RS23585
location: complement(24330..24803)
location: region:24330-24803:-1
so has part: feature:24330-24803:-1:exon

WP_000777555.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24330-24803:-1:exon

JY391_RS23590
type: Gene
subclass of: SO_0000704
RO_0002162: 67826
gene: intI1
locus tag: JY391_RS23590
old locus tag: JY391_23590
pseudo: true
so part of: sequence
location: 24960..25972
location: region:24960-25972:1
so has part: feature:24960-25972:1:exon
subclass of: SO_0000010

position:24960:1
position: 24960
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25972:1
position: 25972
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24960-25972:1:exon

JY391_RS23590
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 67826
gene: intI1
locus tag: JY391_RS23590
old locus tag: JY391_23590
inference: COORDINATES: similar to AA sequence:RefSeq:YP_005221021.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: class 1 integron integrase IntI1
SIO_010081: JY391_RS23590
subclass of: SO_0000673
so part of: JY391_RS23590
location: 24960..25972
location: region:24960-25972:1
so has part: feature:24960-25972:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:24960-25972:1:exon

JY391_RS23595
type: Gene
subclass of: SO_0000704
RO_0002162: 67826
locus tag: JY391_RS23595
old locus tag: JY391_23595
so part of: sequence
location: complement(26319..26885)
location: region:26319-26885:-1
so has part: feature:26319-26885:-1:exon
subclass of: SO_0000010

position:26319:-1
position: 26319
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:26885:-1
position: 26885
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26319-26885:-1:exon

JY391_RS23595
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 67826
locus tag: JY391_RS23595
old locus tag: JY391_23595
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009602860.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MALIGYARVSTAEQDTALQTDALRKAGCERVFEDTASGAKADRPGLADALAYLRDGDVLAVWRLDRLGRSMPHLIETIGALEARGVGFRSLTEAIDTTTPGGRLIFHVFGALGQFERDLIRERTKAGLTAAAARGRKGGRKPVVTADKLQRAREHIANGLNVREAATRLKVSKTALYTALQSTSAADS
SIO_010081: JY391_RS23595
subclass of: SO_0000673
so part of: JY391_RS23595
location: complement(26319..26885)
location: region:26319-26885:-1
so has part: feature:26319-26885:-1:exon

WP_003159185.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26319-26885:-1:exon

JY391_RS23600
type: Gene
subclass of: SO_0000704
RO_0002162: 67826
locus tag: JY391_RS23600
old locus tag: JY391_23600
so part of: sequence
location: 27067..27318
location: region:27067-27318:1
so has part: feature:27067-27318:1:exon
subclass of: SO_0000010

position:27067:1
position: 27067
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27318:1
position: 27318
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27067-27318:1:exon

JY391_RS23600
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 67826
locus tag: JY391_RS23600
old locus tag: JY391_23600
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019334760.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AbrB/MazE/SpoVT family DNA-binding domain-containing protein
translation: MTTLTVTARGQVTFRKDVLQHLGIRPGDKIELDLLPDGRGVLKAARPAGTIASFVGLLAGKTQKVATIEEINEAAAQGWAGKQ
SIO_010081: JY391_RS23600
subclass of: SO_0000673
so part of: JY391_RS23600
location: 27067..27318
location: region:27067-27318:1
so has part: feature:27067-27318:1:exon

WP_003108276.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27067-27318:1:exon

JY391_RS23605
type: Gene
subclass of: SO_0000704
RO_0002162: 67826
locus tag: JY391_RS23605
old locus tag: JY391_23605
so part of: sequence
location: 27315..27710
location: region:27315-27710:1
so has part: feature:27315-27710:1:exon
subclass of: SO_0000010

position:27315:1
position: 27315
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27710:1
position: 27710
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27315-27710:1:exon

JY391_RS23605
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 67826
locus tag: JY391_RS23605
old locus tag: JY391_23605
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017172645.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system VapC family toxin
translation: MKVAVDTNVLVRAVVRDDPAQADVAAAVLTDAELIAVALPCLCEFVWVLLRVYGFQQADAASAIRALLAAANVEVNRPAVEAGLLVLDAGGDFADGVIAYEGNWLGGETFVSFDKKAVALLTAQGQSTRLL
SIO_010081: JY391_RS23605
subclass of: SO_0000673
so part of: JY391_RS23605
location: 27315..27710
location: region:27315-27710:1
so has part: feature:27315-27710:1:exon

WP_003159186.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27315-27710:1:exon

JY391_RS23880
type: Gene
subclass of: SO_0000704
RO_0002162: 67826
locus tag: JY391_RS23880
so part of: sequence
location: 27722..28258
location: region:27722-28258:1
so has part: feature:27722-28258:1:exon
subclass of: SO_0000010

position:27722:1
position: 27722
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28258:1
position: 28258
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27722-28258:1:exon

JY391_RS23880
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 67826
locus tag: JY391_RS23880
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003159187.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNEFRRLAAKIDQHMQQLAAQGVSEAHAIINRMMGYGPDLHRIWVGTSDQQLMALSREFPGFYRYARIMEEASEAERRKASRPYDGMAEFSEQHKQMGAQLLTTAATLERGYQAFRASGSLQDFRPQLDELGRLHRQWLSDLEAFKDSLRTQGAEPKVLEYVNEAFGRLAERIKQLAG
SIO_010081: JY391_RS23880
subclass of: SO_0000673
so part of: JY391_RS23880
location: 27722..28258
location: region:27722-28258:1
so has part: feature:27722-28258:1:exon

WP_003159187.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27722-28258:1:exon

JY391_RS23615
type: Gene
subclass of: SO_0000704
RO_0002162: 67826
gene: intI1
locus tag: JY391_RS23615
old locus tag: JY391_23615
pseudo: true
so part of: sequence
location: complement(28672..>29601)
location: region:28672-29601:-1
so has part: feature:28672-29601:-1:exon
subclass of: SO_0000010

position:28672:-1
position: 28672
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:29601:-1
position: 29601
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28672-29601:-1:exon

JY391_RS23615
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 67826
gene: intI1
locus tag: JY391_RS23615
old locus tag: JY391_23615
inference: COORDINATES: similar to AA sequence:RefSeq:YP_005221021.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: class 1 integron integrase IntI1
SIO_010081: JY391_RS23615
subclass of: SO_0000673
so part of: JY391_RS23615
location: complement(28672..>29601)
location: region:28672-29601:-1
so has part: feature:28672-29601:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:28672-29601:-1:exon

JY391_RS23620
type: Gene
subclass of: SO_0000704
RO_0002162: 67826
locus tag: JY391_RS23620
old locus tag: JY391_23620
so part of: sequence
location: 29760..30314
location: region:29760-30314:1
so has part: feature:29760-30314:1:exon
subclass of: SO_0000010

position:29760:1
position: 29760
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30314:1
position: 30314
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29760-30314:1:exon

JY391_RS23620
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 67826
locus tag: JY391_RS23620
old locus tag: JY391_23620
EC number: 2.3.1.82
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003159191.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: fluoroquinolone-acetylating aminoglycoside 6'-N-acetyltransferase AAC(6')-Ib-cr5
translation: MTNSNDSVTLRLMTEHDLAMLYEWLNRSHIVEWWGGEEARPTLADVQEQYLPSVLAQESVTPYIAMLNGEPIGYAQSYVALGSGDGRWEEETDPGVRGIDQLLANASQLGKGLGTKLVRALVELLFNDPEVTKIQTDPSPSNLRAIRCYEKAGFERQGTVTTPYGPAVYMVQTRQAFERTRSDA
SIO_010081: JY391_RS23620
subclass of: SO_0000673
so part of: JY391_RS23620
location: 29760..30314
location: region:29760-30314:1
so has part: feature:29760-30314:1:exon

WP_063840321.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29760-30314:1:exon

JY391_RS23625
type: Gene
subclass of: SO_0000704
RO_0002162: 67826
locus tag: JY391_RS23625
old locus tag: JY391_23625
so part of: sequence
location: 30445..31275
location: region:30445-31275:1
so has part: feature:30445-31275:1:exon
subclass of: SO_0000010

position:30445:1
position: 30445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31275:1
position: 31275
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30445-31275:1:exon

JY391_RS23625
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 67826
locus tag: JY391_RS23625
old locus tag: JY391_23625
EC number: 3.5.2.6
inference: COORDINATES: similar to AA sequence:RefSeq:WP_032491311.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: oxacillin-hydrolyzing class D beta-lactamase OXA-1
translation: MKNTIHINFAIFLIIANIIYSSASASTDISTVASPLFEGTEGCFLLYDASTNAEIAQFNKAKCATQMAPDSTFKIALSLMAFDAEIIDQKTIFKWDKTPKGMEIWNSNHTPKTWMQFSVVWVSQEITQKIGLNKIKNYLKDFDYGNQDFSGDKERNNGLTEAWLESSLKISPEEQIQFLRKIINHNLPVKNSAIENTIENMYLQDLDNSTKLYGKTGAGFTANRTLQNGWFEGFIISKSGHKYVFVSALTGNLGSNLTSSIKAKKNAITILNTLNL
SIO_010081: JY391_RS23625
subclass of: SO_0000673
so part of: JY391_RS23625
location: 30445..31275
location: region:30445-31275:1
so has part: feature:30445-31275:1:exon

WP_001334766.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:30445-31275:1:exon

JY391_RS23630
type: Gene
subclass of: SO_0000704
RO_0002162: 67826
locus tag: JY391_RS23630
old locus tag: JY391_23630
so part of: sequence
location: 31413..32045
location: region:31413-32045:1
so has part: feature:31413-32045:1:exon
subclass of: SO_0000010

position:31413:1
position: 31413
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32045:1
position: 32045
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31413-32045:1:exon

JY391_RS23630
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 67826
locus tag: JY391_RS23630
old locus tag: JY391_23630
EC number: 2.3.1.28
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002075262.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type B-3 chloramphenicol O-acetyltransferase CatB3
translation: MTNYFDSPFKGKLLSEQVKNPNIKVGRYSYYSGYYHGHSFDDCARYLFPDRDDVDKLIIGSFCSIGSGASFIMAGNQGHRYDWASSFPFFYMQEEPAFSSALDAFQKAGNTVIGNDVWIGSEAMVMPGIKIGHGAVIGSRSLVTKDVEPYAIVGGNPAKKIKKRFTDEEISLLLEMEWWNWSLEKIKAAMPMLCSSNIVGLHKYWLEFAV
SIO_010081: JY391_RS23630
subclass of: SO_0000673
so part of: JY391_RS23630
location: 31413..32045
location: region:31413-32045:1
so has part: feature:31413-32045:1:exon

WP_000186237.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:31413-32045:1:exon

JY391_RS23635
type: Gene
subclass of: SO_0000704
RO_0002162: 67826
locus tag: JY391_RS23635
old locus tag: JY391_23635
pseudo: true
so part of: sequence
location: 32202..32548
location: region:32202-32548:1
so has part: feature:32202-32548:1:exon
subclass of: SO_0000010

position:32202:1
position: 32202
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32548:1
position: 32548
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32202-32548:1:exon

JY391_RS23635
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 67826
locus tag: JY391_RS23635
old locus tag: JY391_23635
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000679427.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: QacE family quaternary ammonium compound efflux SMR transporter
SIO_010081: JY391_RS23635
subclass of: SO_0000673
so part of: JY391_RS23635
location: 32202..32548
location: region:32202-32548:1
so has part: feature:32202-32548:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:32202-32548:1:exon

JY391_RS23640
type: Gene
subclass of: SO_0000704
RO_0002162: 67826
gene: sul1
locus tag: JY391_RS23640
old locus tag: JY391_23640
pseudo: true
so part of: sequence
location: 32542..33380
location: region:32542-33380:1
so has part: feature:32542-33380:1:exon
subclass of: SO_0000010

position:32542:1
position: 32542
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33380:1
position: 33380
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32542-33380:1:exon

JY391_RS23640
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 67826
gene: sul1
locus tag: JY391_RS23640
old locus tag: JY391_23640
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000259031.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: sulfonamide-resistant dihydropteroate synthase Sul1
SIO_010081: JY391_RS23640
subclass of: SO_0000673
so part of: JY391_RS23640
location: 32542..33380
location: region:32542-33380:1
so has part: feature:32542-33380:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:32542-33380:1:exon

JY391_RS23645
type: Gene
subclass of: SO_0000704
RO_0002162: 67826
locus tag: JY391_RS23645
old locus tag: JY391_23645
so part of: sequence
location: 33508..33780
location: region:33508-33780:1
so has part: feature:33508-33780:1:exon
subclass of: SO_0000010

position:33508:1
position: 33508
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33780:1
position: 33780
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33508-33780:1:exon

JY391_RS23645
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 67826
locus tag: JY391_RS23645
old locus tag: JY391_23645
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDSEEPPNVRVACSGDIDEVVRLMHDAAAWMSAKGTPAWDVARIDRTFAETFVLRSELLGIASENGIYGHSRFCNTDFDDKLACLNLSGV
SIO_010081: JY391_RS23645
subclass of: SO_0000673
so part of: JY391_RS23645
location: 33508..33780
location: region:33508-33780:1
so has part: feature:33508-33780:1:exon

WP_004883563.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:33508-33780:1:exon

JY391_RS23650
type: Gene
subclass of: SO_0000704
RO_0002162: 67826
locus tag: JY391_RS23650
old locus tag: JY391_23650
so part of: sequence
location: complement(33962..34966)
location: region:33962-34966:-1
so has part: feature:33962-34966:-1:exon
subclass of: SO_0000010

position:33962:-1
position: 33962
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:34966:-1
position: 34966
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33962-34966:-1:exon

JY391_RS23650
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 67826
locus tag: JY391_RS23650
old locus tag: JY391_23650
inference: COORDINATES: similar to AA sequence:RefSeq:YP_005229637.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS110-like element IS5075 family transposase
translation: MENIALIGIDLGKNSFHIHCQDHRGKAVYRKKFTRPKLIEFLATCPATTIAMEACGGSHFMARKLAELGHFPKLISPQFVRPFVKSNKNDFVDAEAICEAASRPSMRFVQPRTESQQAMRALHRVRESLVQDKVKTTNQMHAFLLEFGISVPRGAAVISRLSTLLEDSSLPLYLSQLLLKLQQHYHYLVEQIKDLESQLKRKLDEDEVGQRLLSIPCVGTLTASTISTEIGDGKQYASSRDFAAATGLVPRQYSTGGRTTLLGISKRGNKKIRTLLVQCARVFIQKLEHQSGKLADWVRELLCRKSNFVVTCALANKLARIAWALTARQQTYEA
SIO_010081: JY391_RS23650
subclass of: SO_0000673
so part of: JY391_RS23650
location: complement(33962..34966)
location: region:33962-34966:-1
so has part: feature:33962-34966:-1:exon

WP_000427614.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:33962-34966:-1:exon

JY391_RS23655
type: Gene
subclass of: SO_0000704
RO_0002162: 67826
gene: chrA
locus tag: JY391_RS23655
old locus tag: JY391_23655
so part of: sequence
location: 35194..36399
location: region:35194-36399:1
so has part: feature:35194-36399:1:exon
subclass of: SO_0000010

position:35194:1
position: 35194
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36399:1
position: 36399
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:35194-36399:1:exon

JY391_RS23655
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 67826
gene: chrA
locus tag: JY391_RS23655
old locus tag: JY391_23655
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004896675.1
GO function: GO:0015109 - chromate transmembrane transporter activity [Evidence IEA]
GO process: GO:0015703 - chromate transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: chromate efflux transporter
translation: MTNNPTDDSRPWSVFLIFLRLGLTSFGGPIAHLGYFRAEFVTRRRWLSERSYADLVALCQFLPGPASSQVGIAVGLSRAGYSGALAAWAGFTLPSAIALILFALGISSYGDYVSQGALHGLKVVAVAVVAQAVWGMARNLCTDGLRVTIMAIATCVVLLVPSAWGQVGVIAIAGIAGRLLFKPAKVVEHDPLPITVSHRAGVLWLSLFFVLLIGLPVLAELMPSQTMAMVDSFYRVGSLVFGGGHVVLPLLQAEVVPSGWVNNESFLAGYGAAQAVPGPLFTFAAFLGASMNTAPSGWIGGIVCLLAIFAPSFLLVVGSMPFWERLRRNTGIQAALAGINAAVVGLLLAALYQPVWTSAIFQPQDFGLALVALVALMFWKLPPWLVVLGSGAAGWLLSVAL
SIO_010081: JY391_RS23655
subclass of: SO_0000673
so part of: JY391_RS23655
location: 35194..36399
location: region:35194-36399:1
so has part: feature:35194-36399:1:exon

WP_000184001.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:35194-36399:1:exon

JY391_RS23660
type: Gene
subclass of: SO_0000704
RO_0002162: 67826
locus tag: JY391_RS23660
old locus tag: JY391_23660
so part of: sequence
location: 36410..36715
location: region:36410-36715:1
so has part: feature:36410-36715:1:exon
subclass of: SO_0000010

position:36410:1
position: 36410
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36715:1
position: 36715
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:36410-36715:1:exon

JY391_RS23660
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 67826
locus tag: JY391_RS23660
old locus tag: JY391_23660
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000130000.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PadR family transcriptional regulator
translation: MTDKDLYGGLIRLHILHHAAEEPVFGLGIIEELRRHGYEMSAGTVYPMLHGLEKKGYLTSRHERTGRRERRVYDITEQGRTALADAKTKVKELFGELVEGG
SIO_010081: JY391_RS23660
subclass of: SO_0000673
so part of: JY391_RS23660
location: 36410..36715
location: region:36410-36715:1
so has part: feature:36410-36715:1:exon

WP_000130000.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:36410-36715:1:exon

JY391_RS23665
type: Gene
subclass of: SO_0000704
RO_0002162: 67826
locus tag: JY391_RS23665
old locus tag: JY391_23665
pseudo: true
so part of: sequence
location: <36759..36824
location: region:36759-36824:1
so has part: feature:36759-36824:1:exon
subclass of: SO_0000010

position:36759:1
position: 36759
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:36824:1
position: 36824
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:36759-36824:1:exon

JY391_RS23665
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 67826
locus tag: JY391_RS23665
old locus tag: JY391_23665
inference: COORDINATES: similar to AA sequence:RefSeq:YP_005229646.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: EAL domain-containing protein
SIO_010081: JY391_RS23665
subclass of: SO_0000673
so part of: JY391_RS23665
location: <36759..36824
location: region:36759-36824:1
so has part: feature:36759-36824:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:36759-36824:1:exon

JY391_RS23670
type: Gene
subclass of: SO_0000704
RO_0002162: 67826
locus tag: JY391_RS23670
old locus tag: JY391_23670
so part of: sequence
location: 36942..37706
location: region:36942-37706:1
so has part: feature:36942-37706:1:exon
subclass of: SO_0000010

position:36942:1
position: 36942
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:37706:1
position: 37706
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:36942-37706:1:exon

JY391_RS23670
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 67826
locus tag: JY391_RS23670
old locus tag: JY391_23670
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001389365.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS6-like element IS6100 family transposase
translation: MTDFKWRHFQGDVILWAVRWYCRYPISYRDLEEMLAERGISVDHTTIYRWVQCYAPEMEKRLRWFWRRGFDPSWRLDETYVKVRGKWTYLYRAVDKRGDTIDFYLSPTRSAKAAKRFLGKALRGLKHWEKPATLNTDKAPSYGAAITELKREGKLDRETAHRQVKYLNNVIEADHGKLKILIKPVRGFKSIPTAYATIKGFEVMRALRKGQARPWCLQPGIRGEVRLVERAFGIGPSALTEAMGMLNHHFAAAA
SIO_010081: JY391_RS23670
subclass of: SO_0000673
so part of: JY391_RS23670
location: 36942..37706
location: region:36942-37706:1
so has part: feature:36942-37706:1:exon

WP_001389365.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:36942-37706:1:exon

JY391_RS23675
type: Gene
subclass of: SO_0000704
RO_0002162: 67826
gene: mphR(A)
locus tag: JY391_RS23675
old locus tag: JY391_23675
so part of: sequence
location: complement(38199..38783)
location: region:38199-38783:-1
so has part: feature:38199-38783:-1:exon
subclass of: SO_0000010

position:38199:-1
position: 38199
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:38783:-1
position: 38783
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:38199-38783:-1:exon

JY391_RS23675
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 67826
gene: mphR(A)
locus tag: JY391_RS23675
old locus tag: JY391_23675
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001137892.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: macrolide-binding transcriptional repressor MphR(A)
translation: MPRPKLKSDDEVLEAATVVLKRCGPIEFTLSGVAKEVGLSRAALIQRFTNRDTLLVRMMERGVEQVRHYLNAIPIGAGPQGLWEFLQVLVRSMNTRNDFSVNYLISWYELQVPELRTLAIQRNRAVVEGIRKRLPPGAPAAAELLLHSVIAGATMQWAVDPDGELADHVLAQIAAILCLMFPEHDDFQLLQAHA
SIO_010081: JY391_RS23675
subclass of: SO_0000673
so part of: JY391_RS23675
location: complement(38199..38783)
location: region:38199-38783:-1
so has part: feature:38199-38783:-1:exon

WP_001137892.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:38199-38783:-1:exon

JY391_RS23680
type: Gene
subclass of: SO_0000704
RO_0002162: 67826
alternative label: mrx
gene: mrx(A)
locus tag: JY391_RS23680
old locus tag: JY391_23680
gene synonym: mrx
so part of: sequence
location: complement(38783..40021)
location: region:38783-40021:-1
so has part: feature:38783-40021:-1:exon
subclass of: SO_0000010

position:40021:-1
position: 40021
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:38783-40021:-1:exon

JY391_RS23680
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 67826
alternative label: mrx
gene: mrx(A)
locus tag: JY391_RS23680
old locus tag: JY391_23680
gene synonym: mrx
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000004159.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: macrolide resistance MFS transporter Mrx(A)
translation: MSERRYSPLATLFAATFLFRIGNAVAALALPWFVLSHTKSAAWAGATAASSVIATIIGAWVGGGLVDRFGRAPVALISGVVGGVAMASIPLLDAVGALSNTGLIACVVLGAAFDAPGMAAQDSELPKLGHVAGLSVERVSSLKAVIGNVAILGGPALGGAAIGLLGAAPTLGLTAFCSVLAGLLGAWVLPARAARTMTTTATLSMRAGVAFLWSEPLLRPLFGIVMIFVGIVGANGSVIMPALFVDAGRQVAELGLFSSMMGAGGLLGIAIHASVGARISAQNWLAVAFCGSAVGSLLLSQLPGVPVLMLLGALVGLLTGSVSPILNAAIYNRTPPELLGRVLGTVSAVMLSASPMVMLAAGAFVDLAGPLPGLVVSAVFAGLVALLSLRLQFATMAAAATASAPTHTEGEH
SIO_010081: JY391_RS23680
subclass of: SO_0000673
so part of: JY391_RS23680
location: complement(38783..40021)
location: region:38783-40021:-1
so has part: feature:38783-40021:-1:exon

WP_000004159.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:38783-40021:-1:exon

JY391_RS23685
type: Gene
subclass of: SO_0000704
RO_0002162: 67826
locus tag: JY391_RS23685
old locus tag: JY391_23685
so part of: sequence
location: complement(40018..40923)
location: region:40018-40923:-1
so has part: feature:40018-40923:-1:exon
subclass of: SO_0000010

position:40018:-1
position: 40018
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:40923:-1
position: 40923
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:40018-40923:-1:exon

JY391_RS23685
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 67826
locus tag: JY391_RS23685
old locus tag: JY391_23685
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000219391.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Mph(A) family macrolide 2'-phosphotransferase
translation: MTVVTTADTSQLYALAARHGLKLHGPLTVNELGLDYRIVIATVDDGRRWVLRIPRRAEVSAKVEPEARVLAMLKNRLPFAVPDWRVANAELVAYPMLEDSTAMVIQPGSSTPDWVVPQDSEVFAESFATALAALHAVPISAAVDAGMLIRTPTQARQKVADDVDRVRREFVVNDKRLHRWQRWLDDDSSWPDFSVVVHGDLYVGHVLIDNTERVSGMIDWSEARVDDPAIDMAAHLMVFGEEGLAKLLLTYEAAGGRVWPRLAHHIAERLAFGAVTYALFALDSGNEEYLAAAKAQLAAAE
SIO_010081: JY391_RS23685
subclass of: SO_0000673
so part of: JY391_RS23685
location: complement(40018..40923)
location: region:40018-40923:-1
so has part: feature:40018-40923:-1:exon

WP_000219391.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:40018-40923:-1:exon

JY391_RS23690
type: Gene
subclass of: SO_0000704
RO_0002162: 67826
locus tag: JY391_RS23690
old locus tag: JY391_23690
so part of: sequence
location: complement(41045..41749)
location: region:41045-41749:-1
so has part: feature:41045-41749:-1:exon
subclass of: SO_0000010

position:41045:-1
position: 41045
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:41749:-1
position: 41749
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41045-41749:-1:exon

JY391_RS23690
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 67826
locus tag: JY391_RS23690
old locus tag: JY391_23690
inference: COORDINATES: similar to AA sequence:RefSeq:YP_005221000.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS6-like element IS26 family transposase
translation: MNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTVDFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDVEHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIKGIEVMRALRKGQASAFYYGDPLGEMRLVSRVFEM
SIO_010081: JY391_RS23690
subclass of: SO_0000673
so part of: JY391_RS23690
location: complement(41045..41749)
location: region:41045-41749:-1
so has part: feature:41045-41749:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:41045-41749:-1:exon

JY391_RS23695
type: Gene
subclass of: SO_0000704
RO_0002162: 67826
locus tag: JY391_RS23695
old locus tag: JY391_23695
pseudo: true
so part of: sequence
location: <41813..42595
location: region:41813-42595:1
so has part: feature:41813-42595:1:exon
subclass of: SO_0000010

position:41813:1
position: 41813
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:42595:1
position: 42595
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41813-42595:1:exon

JY391_RS23695
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 67826
locus tag: JY391_RS23695
old locus tag: JY391_23695
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001513488.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: methyl-accepting chemotaxis protein
SIO_010081: JY391_RS23695
subclass of: SO_0000673
so part of: JY391_RS23695
location: <41813..42595
location: region:41813-42595:1
so has part: feature:41813-42595:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:41813-42595:1:exon

JY391_RS23700
type: Gene
subclass of: SO_0000704
RO_0002162: 67826
locus tag: JY391_RS23700
old locus tag: JY391_23700
so part of: sequence
location: 42923..43684
location: region:42923-43684:1
so has part: feature:42923-43684:1:exon
subclass of: SO_0000010

position:42923:1
position: 42923
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:43684:1
position: 43684
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42923-43684:1:exon

JY391_RS23700
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 67826
locus tag: JY391_RS23700
old locus tag: JY391_23700
inference: COORDINATES: similar to AA sequence:RefSeq:YP_005226821.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DeoR/GlpR family DNA-binding transcription regulator
translation: MIPIERHQRILALVEQRGAVSINELTEILGVSHMTIRRDVSKLEEQGLLVSVSGGVRAVSRLAAEPSHLVKSTLQSEEKQAIGALAASHIAKNSCIYLDAGTTTLALARAILDRNDLQVVTNDFEITQLLIDASQCGVIHTGGTLCRENRSCVGESAARTLRHLAIDTAFISASGWDSRGIFTPDENKVTVKETVSQVSARSILLCDSSKYNQVATFMALPLTRFTTIITDRHLSDAAASHIARHACEVLRAG
SIO_010081: JY391_RS23700
subclass of: SO_0000673
so part of: JY391_RS23700
location: 42923..43684
location: region:42923-43684:1
so has part: feature:42923-43684:1:exon

WP_002210513.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:42923-43684:1:exon