Edwardsiella ictaluri strain S07-698 plasmid pEI-A07-698-1, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Hafniaceae; Edwardsiella.
Comparative genomics of Edwardsiella genus reveals species-based diversity
Submitted (25-SEP-2021) College of Veterinary Medicine, Department of Comparative Biomedical Sciences, Mississippi State University, 127 Experiment Station Road, Stoneville, MS 38776, USA
Submitted (17-APR-2018) College of Veterinary Medicine, Mississippi State University, 127 Experiment Station Road, Stoneville, MS 38776, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP084522.1.\nBacteria and source DNA available from Matt Griffin.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Canu v. 2.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 177.0x\nSequencing Technology :: Illumina; Oxford Nanopore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/26/2023 06:53:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,632\nCDSs (total) :: 3,505\nGenes (coding) :: 3,272\nCDSs (with protein) :: 3,272\nGenes (RNA) :: 127\nrRNAs :: 9, 8, 8 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 8, 8 (5S, 16S, 23S)\ntRNAs :: 97\nncRNAs :: 5\nPseudo Genes (total) :: 233\nCDSs (without protein) :: 233\nPseudo Genes (ambiguous residues) :: 0 of 233\nPseudo Genes (frameshifted) :: 126 of 233\nPseudo Genes (incomplete) :: 155 of 233\nPseudo Genes (internal stop) :: 70 of 233\nPseudo Genes (multiple problems) :: 96 of 233\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF015482.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010848986.1
COORDINATES: similar to AA sequence:RefSeq:WP_012477181.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.