Pseudonocardia dioxanivorans CB1190 plasmid pPSED03, complete sequence.
type: Entry
definition: Pseudonocardia dioxanivorans CB1190 plasmid pPSED03, complete sequence.
sequence version: NC_015313.1
sequence date: 2022-12-08
sequence: sequence
division: CON
label: NC_015313.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN00713596
keyword: GSC:MIGS:2.1
keyword: RefSeq
source: Pseudonocardia dioxanivorans CB1190
organism: Pseudonocardia dioxanivorans CB1190
taxonomy: Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.
reference: 1
references: 21725009
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP002598.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4083663\nSource DNA and organism available from Shaily Mahendra\n(mahendra@seas.ucla.edu)\nContacts: Shaily Mahendra (mahendra@seas.ucla.edu)\n Tanja Woyke (microbe@cuba.jgi-psf.org)\nAnnotation done by JGI-ORNL and JGI-PGF\nFinishing done by JGI-LANL\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. it is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##MIGS-Data-START##\ninvestigation_type :: bacteria_archaea\nproject_name :: Pseudonocardia dioxanivorans CB1190\ncollection_date :: Missing\nlat_lon :: 34.299366 -79.876714\ndepth :: Missing\nalt_elev :: Missing\ncountry :: USA\nenvironment :: Sludge, Fresh water\nnum_replicons :: 4\nref_biomaterial :: ATCC 55486, DSM 44775\nbiotic_relationship :: Free living\ntrophic_level :: Missing\nrel_to_oxygen :: Aerobe\nisol_growth_condt :: Missing\nsequencing_meth :: WGS\nassembly :: Newbler v. 2.3 (pre-release)\nfinishing_strategy :: Finished\nGOLD Stamp ID :: Gi02043\nType Strain :: Yes\nGreengenes ID :: 91804\nIsolation Site :: Industrial sludge contaminated with\n 1,4-dioxane\nIsolation Comments :: isolated by RE Parales, JA Romesser, for\n Celgene Corporation\nTemperature Range :: Mesophile\nTemperature Optimum :: 30CC\nGram Staining :: Gram+\nDiseases :: None\n##MIGS-Data-END##\n\n##Genome-Assembly-Data-START##\nFinishing Goal :: Finished\nAssembly Method :: Newbler v. 2.3\nGenome Coverage :: 30x\nSequencing Technology :: 4…

sequence
subclass of: SO_0000155
sequence length: 15063
topology: circular
so has quality: SO_0000988
location: 1..15063
location: region:1-15063:1
RO_0002162: 675635

NC_015313
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN00713596
type: BioSample
SIO_000068: biosample

1
title: Genome sequence of the 1,4-dioxane-degrading Pseudonocardia dioxanivorans strain CB1190
author: Sales, C.M.
author: Mahendra, S.
author: Grostern, A.
author: Parales, R.E.
author: Goodwin, L.A.
author: Woyke, T.
author: Nolan, M.
author: Lapidus, A.
author: Chertkov, O.
author: Ovchinnikova, G.
author: Sczyrba, A.
author: Alvarez-Cohen, L.
journal: J Bacteriol
volume: 193
issue: 17
pages: 4549-4550
year: 2011
pubmed: 21725009

21725009
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Lucas, S.
author: Copeland, A.
author: Lapidus, A.
author: Cheng, J.-F.
author: Goodwin, L.
author: Pitluck, S.
author: Chertkov, O.
author: Detter, J.C.
author: Han, C.
author: Tapia, R.
author: Land, M.
author: Hauser, L.
author: Kyrpides, N.
author: Ivanova, N.
author: Ovchinnikova, G.
author: Pagani, I.
author: Sales, C.M.
author: Parales, R.E.
author: Alvarez-Cohen, L.
author: Mahendra, S.
author: Woyke, T.
journal: Submitted (16-MAR-2011) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15063:1
position: 15063
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15063:1:source
so part of: sequence
organism: Pseudonocardia dioxanivorans CB1190
mol type: genomic DNA
strain: CB1190
isolation source: industrial sludge contaminated with 1,4-dioxane
type material: type strain of Pseudonocardia dioxanivorans
plasmid: pPSED03
country: USA
lat lon: 34.299366 N 79.876714 W
collected by: RE Parales, JA Romesser

675635
type: Taxonomy
SIO_000068: taxonomy

PSED_RS35175
type: Gene
subclass of: SO_0000704
RO_0002162: 675635
locus tag: PSED_RS35175
so part of: sequence
location: complement(1092..1610)
location: region:1092-1610:-1
so has part: feature:1092-1610:-1:exon
subclass of: SO_0000010

position:1092:-1
position: 1092
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1610:-1
position: 1610
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1092-1610:-1:exon

PSED_RS35175
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 675635
locus tag: PSED_RS35175
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPKSGNSGLPSEYDPESASALEAEIERAWADYEYQAWADEQRDLTVHAKIEWEGVYNARPERTVTFPNVDTSIVARALGRDAKSWRTQLDALYTGGRHAEDAVMRSGLNPSRETVLRWYQGTQAPSAANQRAIESAYREMRSARVAEALSETIRRSEGAEVRFFDVRSMWLD
SIO_010081: PSED_RS35175
subclass of: SO_0000673
so part of: PSED_RS35175
location: complement(1092..1610)
location: region:1092-1610:-1
so has part: feature:1092-1610:-1:exon

WP_143771229.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1092-1610:-1:exon

PSED_RS35180
type: Gene
subclass of: SO_0000704
RO_0002162: 675635
locus tag: PSED_RS35180
old locus tag: Psed_7012
so part of: sequence
location: complement(1620..4211)
location: region:1620-4211:-1
so has part: feature:1620-4211:-1:exon
subclass of: SO_0000010

position:1620:-1
position: 1620
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4211:-1
position: 4211
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1620-4211:-1:exon

PSED_RS35180
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 675635
locus tag: PSED_RS35180
old locus tag: Psed_7012
inference: COORDINATES: protein motif:HMM:TIGR01613.1
GO function: GO:0003896 - DNA primase activity [Evidence IEA]
GO process: GO:0006260 - DNA replication [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phage/plasmid primase, P4 family
translation: MRKPPRAAPHTFNDMGNARRLVELCGDDVRHFRGTWYVWDGKRFARDQDYRVQEQAKRVPLEMRKQAYRAISASKELSHDERKAAETSARELLKFADASGNRLRLASMIELARTEPEITVTDADAFDSDPWAFNVQNGTIDLRTGELREHSRGDMITRISPATYDPDARSELFDKFLARIQPDPVERRALQLCVGYTLTGFTGEAKLFTANGGGRNGKNVLLDTVAHLLGDYYRKAPAGFLTARKEDGTSASPDMADMRGARMVMASETERGDRLAESRVKELTGDRTITARFLYGDFFSFRPTFKIWLLTNYRPSVRGTDEGIWSRLALIPFREYITPEERDPHLTDKLIGLFNGDPSDLSGVLTWAVEGARAWASNKTLALPDTWRAAAEDYRVEQDLMGAFLSDHCIFRPGEITTSGDLYAHYVWWCRQAGEHARSQRAFSIELKQRPEYMKNKVLARKSDGRVVFDGMRGLKPNERTHLVAVAAPDESVTGSARGDNEGDDSRPALRAVGELDTRTAVGQNTPVPTQAPSTRNTPAPTQAPSVRRALTPDERPAARTRVMTSSKAALSENRIPSVLHALEGPCAPLRSGREPRWSPERMPGIAFAAIVKNHNWRRPFRGQTITLDRSGAFLAAIASVDVSHGGLEHTGAMDQYPGLPGYYEVPLFPWTESESLPHPIPGIDKAAKTAWITAPHASLLQELVNAGRWPEFDILDSYTGETSVRLNAGGWSDFIKELRQDVINEYGRDSEQYTLQKRGFSRALTLMLGDGEPGKPRKWECRARRPDWTHAVYAHASAMLWRRADECLRLAPKSGPVAVQRVDEIVIPKRARAAVFAEGSKIVHDPLGLKLGSFKVKSDGEE
SIO_010081: PSED_RS35180
subclass of: SO_0000673
so part of: PSED_RS35180
location: complement(1620..4211)
location: region:1620-4211:-1
so has part: feature:1620-4211:-1:exon

WP_158511372.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1620-4211:-1:exon

PSED_RS35185
type: Gene
subclass of: SO_0000704
RO_0002162: 675635
locus tag: PSED_RS35185
old locus tag: Psed_7015
so part of: sequence
location: complement(5745..5930)
location: region:5745-5930:-1
so has part: feature:5745-5930:-1:exon
subclass of: SO_0000010

position:5745:-1
position: 5745
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5930:-1
position: 5930
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5745-5930:-1:exon

PSED_RS35185
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 675635
locus tag: PSED_RS35185
old locus tag: Psed_7015
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSDEIKAGRYEIRYRAGKQTYASFTDDRVSAIRQLIAARRLSGRAACLDHETQKLITEDDE
SIO_010081: PSED_RS35185
subclass of: SO_0000673
so part of: PSED_RS35185
location: complement(5745..5930)
location: region:5745-5930:-1
so has part: feature:5745-5930:-1:exon

WP_013678666.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5745-5930:-1:exon

PSED_RS35190
type: Gene
subclass of: SO_0000704
RO_0002162: 675635
locus tag: PSED_RS35190
old locus tag: Psed_7016
so part of: sequence
location: complement(5927..6313)
location: region:5927-6313:-1
so has part: feature:5927-6313:-1:exon
subclass of: SO_0000010

position:5927:-1
position: 5927
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6313:-1
position: 6313
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5927-6313:-1:exon

PSED_RS35190
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 675635
locus tag: PSED_RS35190
old locus tag: Psed_7016
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MALVSASALICPVCHEGAQDAPPSEWRVPGTVPAWSHSRDASALCDVIGPDGYVPADPVEVCPRTLTSDETRTLRGIDRNYGPFRDDGWTVGDVIELISALDRETGGELAWCDGAAILAYMRSIGCAR
SIO_010081: PSED_RS35190
subclass of: SO_0000673
so part of: PSED_RS35190
location: complement(5927..6313)
location: region:5927-6313:-1
so has part: feature:5927-6313:-1:exon

WP_013678667.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5927-6313:-1:exon

PSED_RS35195
type: Gene
subclass of: SO_0000704
RO_0002162: 675635
locus tag: PSED_RS35195
so part of: sequence
location: 6686..6898
location: region:6686-6898:1
so has part: feature:6686-6898:1:exon
subclass of: SO_0000010

position:6686:1
position: 6686
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6898:1
position: 6898
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6686-6898:1:exon

PSED_RS35195
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 675635
locus tag: PSED_RS35195
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSNRESATKPVRMFPATHSAFQHMTLSVSVGVGRRVTIAEVVAAAAHVASQHMTEVEEYIKRVDSEVDAG
SIO_010081: PSED_RS35195
subclass of: SO_0000673
so part of: PSED_RS35195
location: 6686..6898
location: region:6686-6898:1
so has part: feature:6686-6898:1:exon

WP_143771233.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6686-6898:1:exon

PSED_RS35200
type: Gene
subclass of: SO_0000704
RO_0002162: 675635
locus tag: PSED_RS35200
old locus tag: Psed_7018
so part of: sequence
location: 6895..7506
location: region:6895-7506:1
so has part: feature:6895-7506:1:exon
subclass of: SO_0000010

position:6895:1
position: 6895
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7506:1
position: 7506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6895-7506:1:exon

PSED_RS35200
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 675635
locus tag: PSED_RS35200
old locus tag: Psed_7018
inference: COORDINATES: protein motif:HMM:NF018691.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MRITVANLKGGVGKTTTSVMLALGFAKHGRTLLIDADPKQSSALEWAGLADDWPLNCSVVAISGKGLAQRAASLVDDYEHVIIDCGAKSSLETRQALMVTDQLIVPASPRALDIVEIPTTFTLAAEIDAVSPVDAVVLLTQVRAATRSSVDVRAVLLERDIPTLRSQVRLREAFAGAYGTVPDSLMDYDDVLTELIGGEKDGR
SIO_010081: PSED_RS35200
subclass of: SO_0000673
so part of: PSED_RS35200
location: 6895..7506
location: region:6895-7506:1
so has part: feature:6895-7506:1:exon

WP_013678669.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6895-7506:1:exon

PSED_RS35205
type: Gene
subclass of: SO_0000704
RO_0002162: 675635
locus tag: PSED_RS35205
old locus tag: Psed_7019
so part of: sequence
location: 7520..7951
location: region:7520-7951:1
so has part: feature:7520-7951:1:exon
subclass of: SO_0000010

position:7520:1
position: 7520
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7951:1
position: 7951
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7520-7951:1:exon

PSED_RS35205
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 675635
locus tag: PSED_RS35205
old locus tag: Psed_7019
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNFGDALDNKAAGLADDTPGDVPADTTEHVSGDVRGDMSDNVRDDMRPDSAWSMRSQSSGDKLDDVFSAYASARESASLRVRKVSVLMTDAQRDALEQWIGRASKAVPGRVTASDVGMHLFDELVNDPVLTRRVLERLIAGIK
SIO_010081: PSED_RS35205
subclass of: SO_0000673
so part of: PSED_RS35205
location: 7520..7951
location: region:7520-7951:1
so has part: feature:7520-7951:1:exon

WP_041763462.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7520-7951:1:exon

PSED_RS35210
type: Gene
subclass of: SO_0000704
RO_0002162: 675635
locus tag: PSED_RS35210
old locus tag: Psed_7020
so part of: sequence
location: 8035..8874
location: region:8035-8874:1
so has part: feature:8035-8874:1:exon
subclass of: SO_0000010

position:8035:1
position: 8035
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8874:1
position: 8874
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8035-8874:1:exon

PSED_RS35210
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 675635
locus tag: PSED_RS35210
old locus tag: Psed_7020
inference: COORDINATES: protein motif:HMM:NF022388.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF2637 domain-containing protein
translation: MFNLTGRPESSGRRPRWIIAVIGAALGVVILAPVALSFSSLVAWAEAALGLNGPWPYIVPVALDAAALLSMALTFHAVTHAESATFPRALVWVFALGSAFANHRHGETVGPDAAIFFPAMPIAAAVLLEVTLRRVRRTVLAELGVTERPLARFRLVRWARFPRETFAAWSTAVEHGLSSPIDALAVAARIEPLDADEIAHAVESRNLAALPSDAARVRRAATVTGQDDPGPVVAWLGAHGHPVTLDAARSALRRRPAARPPVPVSTNGHPVIVRSPETL
SIO_010081: PSED_RS35210
subclass of: SO_0000673
so part of: PSED_RS35210
location: 8035..8874
location: region:8035-8874:1
so has part: feature:8035-8874:1:exon

WP_013678671.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8035-8874:1:exon

PSED_RS35215
type: Gene
subclass of: SO_0000704
RO_0002162: 675635
locus tag: PSED_RS35215
old locus tag: Psed_7021
so part of: sequence
location: 9036..9425
location: region:9036-9425:1
so has part: feature:9036-9425:1:exon
subclass of: SO_0000010

position:9036:1
position: 9036
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9425:1
position: 9425
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9036-9425:1:exon

PSED_RS35215
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 675635
locus tag: PSED_RS35215
old locus tag: Psed_7021
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTAWSGAATFVVLAGIARGIAGWPVLAAVPLAAVAAVLVTVALYWHGDRGGREYERRTDRVGAVARTFYLIVGRIPTDDELASLVSDRPVTTLGGHATTPRPVRPGPLPGGVRLLSIVGPSDGGNGGAA
SIO_010081: PSED_RS35215
subclass of: SO_0000673
so part of: PSED_RS35215
location: 9036..9425
location: region:9036-9425:1
so has part: feature:9036-9425:1:exon

WP_041763463.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9036-9425:1:exon

PSED_RS35220
type: Gene
subclass of: SO_0000704
RO_0002162: 675635
locus tag: PSED_RS35220
old locus tag: Psed_7022
so part of: sequence
location: 9671..11407
location: region:9671-11407:1
so has part: feature:9671-11407:1:exon
subclass of: SO_0000010

position:9671:1
position: 9671
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11407:1
position: 11407
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9671-11407:1:exon

PSED_RS35220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 675635
locus tag: PSED_RS35220
old locus tag: Psed_7022
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MFVWLYAAHRTAFTWTAWLSIVVALVAIVVLASRTAHGWQHRRTYVEPLSRALAPTLGIETPRNPASWITVPRSAVAPVPLITVPDKVREAAPMQLAARVWARRPEHIIPARLRREPDTAIRVQLPDGFTGSSDAQSTVTRIVSSKLGIPELNASFGMIGKPIATFTKKARPPEIAKWNDHQALVRAASESAPLIGVAANRKAVAVDLDAESPHILISSSTGGGKSVMARAIICQGLHNGGIALVLDVKRVSHAWARGLPNVRYCANVADIHNALLWVRGEVERRYTLIDDGADIDGNVGHIDLGPRVFILAEEQNATITRLNEYWRETRESSDPKQSPAVAALNEVLFMGRACQTHVITIGQLMTARASGGPEARENYATRILARYSVNAWRMLVPECWPPPRSSRHSGRVQVVLAGKATETQVIFTTPGEAREYATSGIVTEFPALGGAPVAPPPLAPPVVSDEAAADDRSPGETTTSRGSQGQNGAAPGVTLSEAAEAAVPLSLKALRSARDRDSEFPKPIGKRGRAWVYSPESLARWERNRSTPGKQWAKDVSTPPKDVIDLSVERVKRKVDHA
SIO_010081: PSED_RS35220
subclass of: SO_0000673
so part of: PSED_RS35220
location: 9671..11407
location: region:9671-11407:1
so has part: feature:9671-11407:1:exon

WP_049803828.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9671-11407:1:exon

PSED_RS35225
type: Gene
subclass of: SO_0000704
RO_0002162: 675635
locus tag: PSED_RS35225
so part of: sequence
location: 12651..12938
location: region:12651-12938:1
so has part: feature:12651-12938:1:exon
subclass of: SO_0000010

position:12651:1
position: 12651
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12938:1
position: 12938
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12651-12938:1:exon

PSED_RS35225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 675635
locus tag: PSED_RS35225
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRAEARETARRDAEQFSAQMNAIRQAAAMVARMRGVSVPNVPVADATFDDDGQDDYTPAPVVAPRSTGRVEYLPDTSGGQGVPITYIDISGKSES
SIO_010081: PSED_RS35225
subclass of: SO_0000673
so part of: PSED_RS35225
location: 12651..12938
location: region:12651-12938:1
so has part: feature:12651-12938:1:exon

WP_041763465.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12651-12938:1:exon

PSED_RS35230
type: Gene
subclass of: SO_0000704
RO_0002162: 675635
locus tag: PSED_RS35230
old locus tag: Psed_7024
so part of: sequence
location: 12935..13573
location: region:12935-13573:1
so has part: feature:12935-13573:1:exon
subclass of: SO_0000010

position:12935:1
position: 12935
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13573:1
position: 13573
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12935-13573:1:exon

PSED_RS35230
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 675635
locus tag: PSED_RS35230
old locus tag: Psed_7024
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTASEKFVGSPEHVKQAIDFIQAEFLLRDSDVHVVNITTADFYGGFETLVRLNNQLVSGARTLPTGKESNNWEKYNVQFVIFNKKISTRPWGDGYTGEPYAGLGGDFTDRVQVKFKEVGTTPDSRADTQQEIADPLPGATNALDTAWGMFTGLADFLKMLQDPGTWVRLAAAITGGAMLLVVAWKLVGARQLVGSADGGGLKSALKIAQAVR
SIO_010081: PSED_RS35230
subclass of: SO_0000673
so part of: PSED_RS35230
location: 12935..13573
location: region:12935-13573:1
so has part: feature:12935-13573:1:exon

WP_013678675.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12935-13573:1:exon