Bacteroides faecis strain BFG-108 plasmid unnamed2, complete sequence.
Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.
WGS Sequencing of Bacteroides fragilis Group Isolates
NISC Comparative Sequencing Program, N.I.H.
Submitted (20-AUG-2021) LCIM, National Institute of Allergy and Infectious Diseases, 9000 Rockville Pike, Bethesda, MD 20892, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP081915.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP/FALCON v. v. 6.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 288x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/26/2023 07:09:09\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,043\nCDSs (total) :: 4,955\nGenes (coding) :: 4,859\nCDSs (with protein) :: 4,859\nGenes (RNA) :: 88\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 71\nncRNAs :: 2\nPseudo Genes (total) :: 96\nCDSs (without protein) :: 96\nPseudo Genes (ambiguous residues) :: 0 of 96\nPseudo Genes (frameshifted) :: 27 of 96\nPseudo Genes (incomplete) :: 55 of 96\nPseudo Genes (internal stop) :: 30 of 96\nPseudo Genes (multiple problems) :: 15 of 96\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Department of Laboratory Medicine - NIH Clinical Center
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_008778069.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005648610.1
COORDINATES: similar to AA sequence:RefSeq:WP_007756669.1
COORDINATES: similar to AA sequence:RefSeq:WP_007851311.1
COORDINATES: similar to AA sequence:RefSeq:WP_007756673.1
COORDINATES: similar to AA sequence:RefSeq:WP_005648574.1
COORDINATES: similar to AA sequence:RefSeq:WP_005648576.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008778074.1
COORDINATES: similar to AA sequence:RefSeq:WP_005648588.1
COORDINATES: similar to AA sequence:RefSeq:WP_009276889.1
COORDINATES: similar to AA sequence:RefSeq:WP_007659510.1
COORDINATES: similar to AA sequence:RefSeq:WP_008142193.1
COORDINATES: similar to AA sequence:RefSeq:WP_005648596.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008777460.1
COORDINATES: similar to AA sequence:RefSeq:WP_005648607.1
COORDINATES: similar to AA sequence:RefSeq:WP_007659518.1
COORDINATES: similar to AA sequence:RefSeq:WP_007851284.1
COORDINATES: similar to AA sequence:RefSeq:WP_011966132.1
COORDINATES: similar to AA sequence:RefSeq:WP_007659484.1
COORDINATES: similar to AA sequence:RefSeq:WP_005783162.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007659486.1
COORDINATES: similar to AA sequence:RefSeq:WP_013611931.1
COORDINATES: similar to AA sequence:RefSeq:WP_005783170.1
COORDINATES: similar to AA sequence:RefSeq:WP_014776477.1
COORDINATES: similar to AA sequence:RefSeq:WP_007756692.1
COORDINATES: similar to AA sequence:RefSeq:WP_007659494.1
COORDINATES: similar to AA sequence:RefSeq:WP_005842174.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007756700.1
COORDINATES: similar to AA sequence:RefSeq:WP_005842179.1
COORDINATES: similar to AA sequence:RefSeq:WP_007659499.1
COORDINATES: similar to AA sequence:RefSeq:WP_005842183.1
COORDINATES: similar to AA sequence:RefSeq:WP_005842185.1
COORDINATES: similar to AA sequence:RefSeq:WP_007659504.1
COORDINATES: similar to AA sequence:RefSeq:WP_005842190.1
COORDINATES: similar to AA sequence:RefSeq:WP_005842192.1
COORDINATES: similar to AA sequence:RefSeq:WP_005842194.1
COORDINATES: similar to AA sequence:RefSeq:WP_005842196.1
type IV secretory system conjugative DNA transfer family protein