Streptomyces xanthophaeus strain KPP03845 plasmid unnamed2.
Bacteria; Actinomycetota; Actinomycetes; Kitasatosporales; Streptomycetaceae; Streptomyces.
Complete genome sequence of Streptomyces xanthophaeus strain KPP03845
Submitted (22-JAN-2023) Smart Farm Research Center, Korea Institute of Science and Technology, 679, Saimdang-ro, Gangneung 25451, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP116357.1.\nBacteria and source DNA available from Jeong Do Kim, Ph.D. @ KIST\nGangneung Institute of Natural Products, Gangneung, South Korea.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: SEP-2019\nAssembly Method :: HGAP v. 3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 63.0x\nSequencing Technology :: PacBio RSII; Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/03/2023 18:31:57\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 7,846\nCDSs (total) :: 7,748\nGenes (coding) :: 7,587\nCDSs (with protein) :: 7,587\nGenes (RNA) :: 98\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 74\nncRNAs :: 3\nPseudo Genes (total) :: 161\nCDSs (without protein) :: 161\nPseudo Genes (ambiguous residues) :: 0 of 161\nPseudo Genes (frameshifted) :: 64 of 161\nPseudo Genes (incomplete) :: 123 of 161\nPseudo Genes (internal stop) :: 9 of 161\nPseudo Genes (multiple problems) :: 33 of 161\n##Genome-Annotation-Data-END##
COORDINATES: similar to AA sequence:RefSeq:WP_015449533.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015449532.1
COORDINATES: similar to AA sequence:RefSeq:WP_008740903.1
COORDINATES: similar to AA sequence:RefSeq:WP_003963323.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018844906.1
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_018106296.1
COORDINATES: similar to AA sequence:RefSeq:WP_020141304.1
ScbR family autoregulator-binding transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_019060784.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005513199.1
COORDINATES: similar to AA sequence:RefSeq:WP_007268968.1
COORDINATES: similar to AA sequence:RefSeq:WP_007268969.1
COORDINATES: similar to AA sequence:RefSeq:WP_007268970.1
COORDINATES: similar to AA sequence:RefSeq:WP_007519846.1
COORDINATES: similar to AA sequence:RefSeq:WP_008740918.1
GO:0016639 - oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor [Evidence IEA]
GO:0006520 - amino acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008740919.1
COORDINATES: similar to AA sequence:RefSeq:WP_008742102.1
COORDINATES: similar to AA sequence:RefSeq:WP_014158409.1
GO:0003896 - DNA primase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018106289.1
COORDINATES: similar to AA sequence:RefSeq:WP_018106291.1
COORDINATES: similar to AA sequence:RefSeq:WP_007268973.1
COORDINATES: protein motif:HMM:NF041195.1
ScbA/BarX family gamma-butyrolactone biosynthesis protein
COORDINATES: similar to AA sequence:RefSeq:WP_004994460.1
COORDINATES: similar to AA sequence:RefSeq:WP_016432460.1
COORDINATES: similar to AA sequence:RefSeq:WP_016643811.1
COORDINATES: similar to AA sequence:RefSeq:WP_020133202.1
AfsR/SARP family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007268976.1
COORDINATES: similar to AA sequence:RefSeq:WP_015577805.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_018854663.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015610243.1
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016336915.1
COORDINATES: similar to AA sequence:RefSeq:WP_020132892.1
COORDINATES: similar to AA sequence:RefSeq:WP_018840985.1
COORDINATES: similar to AA sequence:RefSeq:WP_018840564.1
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018835170.1
GO:0016765 - transferase activity, transferring alkyl or aryl (other than methyl) groups [Evidence IEA]
undecaprenyl diphosphate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015662652.1
class I adenylate-forming enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010357734.1
DegT/DnrJ/EryC1/StrS family aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_009945422.1
COORDINATES: similar to AA sequence:RefSeq:WP_015036549.1
COORDINATES: protein motif:HMM:NF024242.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015033168.1
COORDINATES: protein motif:HMM:NF022742.2
COORDINATES: similar to AA sequence:RefSeq:WP_020133217.1
cytochrome bc complex cytochrome b subunit
COORDINATES: protein motif:HMM:NF013646.2
COORDINATES: similar to AA sequence:RefSeq:WP_020132900.1
GO:0047472 - 3-carboxy-cis,cis-muconate cycloisomerase activity [Evidence IEA]
3-carboxy-cis,cis-muconate cycloisomerase
COORDINATES: similar to AA sequence:RefSeq:WP_006124756.1
COORDINATES: similar to AA sequence:RefSeq:WP_018854643.1
COORDINATES: similar to AA sequence:RefSeq:WP_020132902.1
COORDINATES: protein motif:HMM:TIGR00549.1
GO:0004496 - mevalonate kinase activity [Evidence IEA]
GO:0019287 - isopentenyl diphosphate biosynthetic process, mevalonate pathway [Evidence IEA]; GO:0016126 - sterol biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020132904.1
GO:0004163 - diphosphomevalonate decarboxylase activity [Evidence IEA]
GO:0019287 - isopentenyl diphosphate biosynthetic process, mevalonate pathway [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020132905.1
GO:0004631 - phosphomevalonate kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015662658.1
GO:0004452 - isopentenyl-diphosphate delta-isomerase activity [Evidence IEA]
GO:0008299 - isoprenoid biosynthetic process [Evidence IEA]
type 2 isopentenyl-diphosphate Delta-isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_020132907.1
COORDINATES: similar to AA sequence:RefSeq:WP_015662660.1
GO:0004421 - hydroxymethylglutaryl-CoA synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020133203.1
COORDINATES: protein motif:HMM:NF039972.1
COORDINATES: similar to AA sequence:RefSeq:WP_005321883.1
GO:0004013 - adenosylhomocysteinase activity [Evidence IEA]
GO:0006730 - one-carbon metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005321882.1
GO:0004489 - methylenetetrahydrofolate reductase (NAD(P)H) activity [Evidence IEA]
GO:0009086 - methionine biosynthetic process [Evidence IEA]
methylenetetrahydrofolate reductase [NAD(P)H]
COORDINATES: similar to AA sequence:RefSeq:WP_006373307.1
GO:0008705 - methionine synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018106342.1
COORDINATES: similar to AA sequence:RefSeq:WP_009187586.1
GO:0004478 - methionine adenosyltransferase activity [Evidence IEA]
GO:0006556 - S-adenosylmethionine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012873.2
COORDINATES: similar to AA sequence:RefSeq:WP_005321832.1
COORDINATES: similar to AA sequence:RefSeq:WP_018106314.1
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004994442.1
COORDINATES: similar to AA sequence:RefSeq:WP_018215632.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018385906.1
GO:0008171 - O-methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018854618.1
COORDINATES: similar to AA sequence:RefSeq:WP_018840986.1
COORDINATES: similar to AA sequence:RefSeq:WP_018840980.1
COORDINATES: similar to AA sequence:RefSeq:WP_018840982.1
COORDINATES: similar to AA sequence:RefSeq:WP_020670167.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020075615.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019891806.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]
carboxymuconolactone decarboxylase family protein
COORDINATES: protein motif:HMM:NF024212.2
COORDINATES: similar to AA sequence:RefSeq:WP_011872576.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012887003.1
DUF4097 family beta strand repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010982133.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018834902.1
COORDINATES: protein motif:HMM:NF013700.2
COORDINATES: protein motif:HMM:NF020622.2
COORDINATES: similar to AA sequence:RefSeq:WP_012606213.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.