Streptomyces xanthophaeus strain KPP03845 plasmid unnamed1.
Bacteria; Actinomycetota; Actinomycetes; Kitasatosporales; Streptomycetaceae; Streptomyces.
Complete genome sequence of Streptomyces xanthophaeus strain KPP03845
Submitted (22-JAN-2023) Smart Farm Research Center, Korea Institute of Science and Technology, 679, Saimdang-ro, Gangneung 25451, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP116356.1.\nBacteria and source DNA available from Jeong Do Kim, Ph.D. @ KIST\nGangneung Institute of Natural Products, Gangneung, South Korea.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: SEP-2019\nAssembly Method :: HGAP v. 3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 63.0x\nSequencing Technology :: PacBio RSII; Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/03/2023 18:31:57\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 7,846\nCDSs (total) :: 7,748\nGenes (coding) :: 7,587\nCDSs (with protein) :: 7,587\nGenes (RNA) :: 98\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 74\nncRNAs :: 3\nPseudo Genes (total) :: 161\nCDSs (without protein) :: 161\nPseudo Genes (ambiguous residues) :: 0 of 161\nPseudo Genes (frameshifted) :: 64 of 161\nPseudo Genes (incomplete) :: 123 of 161\nPseudo Genes (internal stop) :: 9 of 161\nPseudo Genes (multiple problems) :: 33 of 161\n##Genome-Annotation-Data-END##
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_019891755.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019891754.1
COORDINATES: similar to AA sequence:RefSeq:WP_018960872.1
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_006138479.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003995214.1
COORDINATES: similar to AA sequence:RefSeq:WP_018555009.1
COORDINATES: similar to AA sequence:RefSeq:WP_018522951.1
GO:0004519 - endonuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015034649.1
COORDINATES: similar to AA sequence:RefSeq:WP_018844031.1
COORDINATES: similar to AA sequence:RefSeq:WP_018349789.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018093669.1
COORDINATES: similar to AA sequence:RefSeq:WP_016884799.1
COORDINATES: protein motif:HMM:NF017026.2
COORDINATES: similar to AA sequence:RefSeq:WP_004986601.1
COORDINATES: similar to AA sequence:RefSeq:WP_012891692.1
COORDINATES: similar to AA sequence:RefSeq:WP_012379949.1
COORDINATES: similar to AA sequence:RefSeq:WP_008735319.1
COORDINATES: similar to AA sequence:RefSeq:WP_019324550.1
GO:0016791 - phosphatase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020130118.1
COORDINATES: protein motif:HMM:NF020332.2
COORDINATES: similar to AA sequence:RefSeq:WP_014058181.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611170.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007268373.1
COORDINATES: protein motif:HMM:NF013124.2
COORDINATES: similar to AA sequence:RefSeq:WP_018844736.1
COORDINATES: protein motif:HMM:NF041492.1
COORDINATES: similar to AA sequence:RefSeq:WP_009998596.1
COORDINATES: protein motif:HMM:NF024758.2
COORDINATES: similar to AA sequence:RefSeq:WP_017949985.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF039687.1
COORDINATES: protein motif:HMM:NF012318.2
COORDINATES: protein motif:HMM:NF024907.2
COORDINATES: similar to AA sequence:RefSeq:WP_007268494.1
COORDINATES: similar to AA sequence:RefSeq:WP_007268495.1
COORDINATES: similar to AA sequence:RefSeq:WP_016640798.1
COORDINATES: similar to AA sequence:RefSeq:WP_015655099.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014158477.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_014158476.1
COORDINATES: similar to AA sequence:RefSeq:WP_018102222.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020114933.1
COORDINATES: similar to AA sequence:RefSeq:WP_017574738.1
COORDINATES: similar to AA sequence:RefSeq:WP_018554992.1
COORDINATES: similar to AA sequence:RefSeq:WP_008742151.1
COORDINATES: similar to AA sequence:RefSeq:WP_018845035.1
COORDINATES: similar to AA sequence:RefSeq:WP_007450736.1
COORDINATES: similar to AA sequence:RefSeq:WP_007495434.1
COORDINATES: similar to AA sequence:RefSeq:WP_007830765.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677502.1
COORDINATES: similar to AA sequence:RefSeq:WP_018541849.1
RRQRL motif-containing zinc-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_015449470.1
COORDINATES: similar to AA sequence:RefSeq:WP_007505690.1
COORDINATES: similar to AA sequence:RefSeq:WP_003948050.1
COORDINATES: similar to AA sequence:RefSeq:WP_011109703.1
COORDINATES: similar to AA sequence:RefSeq:WP_011109702.1
COORDINATES: similar to AA sequence:RefSeq:WP_011109701.1
COORDINATES: similar to AA sequence:RefSeq:WP_007504810.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677476.1
COORDINATES: similar to AA sequence:RefSeq:WP_018522959.1
COORDINATES: similar to AA sequence:RefSeq:WP_018569256.1
COORDINATES: similar to AA sequence:RefSeq:WP_019074378.1
COORDINATES: similar to AA sequence:RefSeq:WP_010353616.1
COORDINATES: similar to AA sequence:RefSeq:WP_007505220.1
COORDINATES: similar to AA sequence:RefSeq:WP_003954247.1
COORDINATES: similar to AA sequence:RefSeq:WP_014158427.1
COORDINATES: similar to AA sequence:RefSeq:WP_018825457.1
COORDINATES: similar to AA sequence:RefSeq:WP_009741112.1
COORDINATES: similar to AA sequence:RefSeq:WP_018492643.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009998312.1
COORDINATES: protein motif:HMM:NF017103.2
COORDINATES: protein motif:HMM:NF039647.1
COORDINATES: similar to AA sequence:RefSeq:WP_008741676.1
GO:0003678 - DNA helicase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005322175.1
COORDINATES: protein motif:HMM:NF024793.2
COORDINATES: similar to AA sequence:RefSeq:WP_007447131.1
COORDINATES: similar to AA sequence:RefSeq:WP_018881931.1
GO:0003824 - catalytic activity [Evidence IEA]
NAD-dependent epimerase/dehydratase family protein
COORDINATES: protein motif:HMM:NF037054.2
COORDINATES: similar to AA sequence:RefSeq:WP_007264007.1
COORDINATES: similar to AA sequence:RefSeq:WP_007264008.1
COORDINATES: similar to AA sequence:RefSeq:WP_016824833.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018522722.1
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018522721.1
COORDINATES: similar to AA sequence:RefSeq:WP_018522720.1
GO:0008701 - 4-hydroxy-2-oxovalerate aldolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011039353.1
COORDINATES: similar to AA sequence:RefSeq:WP_018522718.1
COORDINATES: similar to AA sequence:RefSeq:WP_011039351.1
COORDINATES: similar to AA sequence:RefSeq:WP_008749662.1
COORDINATES: protein motif:HMM:NF013500.2
COORDINATES: similar to AA sequence:RefSeq:WP_008736377.1
COORDINATES: similar to AA sequence:RefSeq:WP_008735913.1
COORDINATES: similar to AA sequence:RefSeq:WP_007265086.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008410914.1
COORDINATES: similar to AA sequence:RefSeq:WP_003995073.1
COORDINATES: similar to AA sequence:RefSeq:WP_008735322.1
COORDINATES: protein motif:HMM:NF025022.2
COORDINATES: similar to AA sequence:RefSeq:WP_019355422.1
COORDINATES: similar to AA sequence:RefSeq:WP_019327906.1
GO:0045027 - DNA end binding [Evidence IEA]
GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008735917.1
COORDINATES: similar to AA sequence:RefSeq:WP_020665611.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611972.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013003.2
COORDINATES: protein motif:HMM:NF013757.2
IclR family transcriptional regulator C-terminal domain-containing protein
COORDINATES: protein motif:HMM:TIGR02937.1
sigma-70 family RNA polymerase sigma factor
COORDINATES: protein motif:HMM:NF024949.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_019979986.1
COORDINATES: similar to AA sequence:RefSeq:WP_018106294.1
GO:0003896 - DNA primase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018521694.1
COORDINATES: similar to AA sequence:RefSeq:WP_014692729.1
COORDINATES: similar to AA sequence:RefSeq:WP_003947727.1
COORDINATES: protein motif:HMM:NF025033.2
COORDINATES: protein motif:HMM:NF017760.2
COORDINATES: protein motif:HMM:NF015722.2
SUMF1/EgtB/PvdO family nonheme iron enzyme
COORDINATES: protein motif:HMM:NF024752.2
COORDINATES: similar to AA sequence:RefSeq:WP_003988498.1
COORDINATES: similar to AA sequence:RefSeq:WP_017236480.1
COORDINATES: similar to AA sequence:RefSeq:WP_008476857.1
COORDINATES: similar to AA sequence:RefSeq:WP_015654869.1
BTAD domain-containing putative transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015654870.1
COORDINATES: similar to AA sequence:RefSeq:WP_015654871.1
COORDINATES: similar to AA sequence:RefSeq:WP_007261936.1
COORDINATES: similar to AA sequence:RefSeq:WP_015799262.1
class II aldolase/adducin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017555972.1
GO:0046983 - protein dimerization activity [Evidence IEA]
alkyl sulfatase dimerization domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003982598.1
GO:0031522 - cell envelope Sec protein transport complex [Evidence IEA]
GO:0015450 - protein-transporting ATPase activity [Evidence IEA]
GO:0043952 - protein transport by the Sec complex [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010052542.1
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_018468494.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677494.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677493.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011774110.1
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016644028.1
COORDINATES: similar to AA sequence:RefSeq:WP_008735698.1
COORDINATES: similar to AA sequence:RefSeq:WP_008736621.1
COORDINATES: similar to AA sequence:RefSeq:WP_018957843.1
PP2C family protein-serine/threonine phosphatase
COORDINATES: similar to AA sequence:RefSeq:WP_007268256.1
GO:0046872 - metal ion binding [Evidence IEA]
Presence of a B(12) (cobalamin)-binding domain implies dependence on cobalamin itself, in one of its several forms, or in some unusual lineages, dependence on a cobalamin-like analog.; Presence of a B(12) (cobalamin)-binding domain implies dependence on cobalamin itself, in one of its several forms, or in some unusual lineages, dependence on a cobalamin-like analog.; Presence of a B(12) (cobalamin)-binding domain implies dependence on cobalamin itself, in one of its several forms, or in some unusual lineages, dependence on a cobalamin-like analog; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013868.2
COORDINATES: similar to AA sequence:RefSeq:WP_010063851.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006124296.1
COORDINATES: similar to AA sequence:RefSeq:WP_018846478.1
COORDINATES: similar to AA sequence:RefSeq:WP_015031367.1
COORDINATES: similar to AA sequence:RefSeq:WP_013002050.1
COORDINATES: similar to AA sequence:RefSeq:WP_007266534.1
COORDINATES: similar to AA sequence:RefSeq:WP_011689570.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018657916.1
COORDINATES: similar to AA sequence:RefSeq:WP_017626773.1
COORDINATES: similar to AA sequence:RefSeq:WP_020133247.1
COORDINATES: similar to AA sequence:RefSeq:WP_007446667.1
COORDINATES: similar to AA sequence:RefSeq:WP_020119326.1
COORDINATES: similar to AA sequence:RefSeq:WP_014145517.1
COORDINATES: similar to AA sequence:RefSeq:WP_018560467.1
COORDINATES: similar to AA sequence:RefSeq:WP_005473554.1
COORDINATES: similar to AA sequence:RefSeq:WP_006128436.1
COORDINATES: similar to AA sequence:RefSeq:WP_009719290.1
COORDINATES: similar to AA sequence:RefSeq:WP_008739453.1
COORDINATES: similar to AA sequence:RefSeq:WP_012122756.1
COORDINATES: protein motif:HMM:NF018154.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005483684.1
COORDINATES: similar to AA sequence:RefSeq:WP_003954143.1
COORDINATES: similar to AA sequence:RefSeq:WP_007268489.1
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_020128306.1
COORDINATES: protein motif:HMM:NF024767.2
COORDINATES: similar to AA sequence:RefSeq:WP_016643600.1
COORDINATES: protein motif:HMM:NF033679.1
COORDINATES: similar to AA sequence:RefSeq:WP_008737993.1
polymorphic toxin-type HINT domain-containing protein
COORDINATES: protein motif:HMM:NF025786.2
COORDINATES: similar to AA sequence:RefSeq:WP_011875704.1
COORDINATES: protein motif:HMM:NF013739.2
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013750.2
chitin binding domain-containing protein
COORDINATES: protein motif:HMM:NF017885.2
COORDINATES: protein motif:HMM:NF013252.2
COORDINATES: similar to AA sequence:RefSeq:WP_008735183.1
COORDINATES: similar to AA sequence:RefSeq:WP_010080128.1
COORDINATES: protein motif:HMM:NF024967.2
COORDINATES: similar to AA sequence:RefSeq:WP_008735706.1
isoamylase early set domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015507582.1
COORDINATES: protein motif:HMM:NF024857.2
COORDINATES: similar to AA sequence:RefSeq:WP_016663675.1
COORDINATES: similar to AA sequence:RefSeq:WP_010040363.1
COORDINATES: similar to AA sequence:RefSeq:WP_003954195.1
COORDINATES: similar to AA sequence:RefSeq:WP_007447152.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677423.1
COORDINATES: similar to AA sequence:RefSeq:WP_008734407.1
COORDINATES: similar to AA sequence:RefSeq:WP_008734401.1
COORDINATES: similar to AA sequence:RefSeq:WP_019544218.1
CDGSH iron-sulfur domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017237631.1
COORDINATES: similar to AA sequence:RefSeq:WP_009717712.1
COORDINATES: similar to AA sequence:RefSeq:WP_009717711.1
COORDINATES: similar to AA sequence:RefSeq:WP_019069063.1
TetR/AcrR family transcriptional regulator
COORDINATES: protein motif:HMM:NF017843.2
COORDINATES: protein motif:HMM:NF025391.2
COORDINATES: similar to AA sequence:RefSeq:WP_013477313.1
COORDINATES: similar to AA sequence:RefSeq:WP_003969499.1
COORDINATES: similar to AA sequence:RefSeq:WP_007459558.1
COORDINATES: similar to AA sequence:RefSeq:WP_018546090.1
COORDINATES: similar to AA sequence:RefSeq:WP_014044356.1
COORDINATES: protein motif:HMM:NF024940.2
COORDINATES: protein motif:HMM:NF040195.1
COORDINATES: protein motif:HMM:NF012296.2
GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020139654.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF017539.2