Streptomyces californicus strain FDAARGOS_1209 plasmid unnamed2.
Bacteria; Actinomycetota; Actinomycetes; Kitasatosporales; Streptomycetaceae; Streptomyces.
FDA dAtabase for Regulatory Grade micrObial Sequences (FDA-ARGOS): Supporting development and validation of Infectious Disease Dx tests
Submitted (09-FEB-2021) Institute for Genome Sciences, University of Maryland School of Medicine, BioPark II, 801 W. Baltimore St., Suite 619, Baltimore, MD 21201, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP070243.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRT v. 8.0.0, HGAP v. 4\nGenome Coverage :: 563.84x\nSequencing Technology :: Pacbio; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/14/2023 13:34:56\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 7,044\nCDSs (total) :: 6,957\nGenes (coding) :: 6,842\nCDSs (with protein) :: 6,842\nGenes (RNA) :: 87\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 66\nncRNAs :: 3\nPseudo Genes (total) :: 115\nCDSs (without protein) :: 115\nPseudo Genes (ambiguous residues) :: 0 of 115\nPseudo Genes (frameshifted) :: 47 of 115\nPseudo Genes (incomplete) :: 84 of 115\nPseudo Genes (internal stop) :: 7 of 115\nPseudo Genes (multiple problems) :: 20 of 115\nCRISPR Arrays :: 6\n##Genome-Annotation-Data-END##
type strain of Streptomyces californicus
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_010071719.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018844908.1
COORDINATES: similar to AA sequence:RefSeq:WP_010988959.1
COORDINATES: similar to AA sequence:RefSeq:WP_015449423.1
COORDINATES: protein motif:HMM:NF025186.2
COORDINATES: similar to AA sequence:RefSeq:WP_018523885.1
COORDINATES: similar to AA sequence:RefSeq:WP_011109729.1
COORDINATES: similar to AA sequence:RefSeq:WP_018523465.1
COORDINATES: similar to AA sequence:RefSeq:WP_003954285.1
COORDINATES: similar to AA sequence:RefSeq:WP_012377461.1
COORDINATES: similar to AA sequence:RefSeq:WP_014158452.1
COORDINATES: similar to AA sequence:RefSeq:WP_014059245.1
COORDINATES: similar to AA sequence:RefSeq:WP_018383745.1
COORDINATES: similar to AA sequence:RefSeq:WP_014669526.1
FMN-binding negative transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_005473467.1
GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
phenylalanine--tRNA ligase beta subunit-related protein
COORDINATES: similar to AA sequence:RefSeq:WP_003971009.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006346094.1
COORDINATES: protein motif:HMM:NF015648.2
COORDINATES: similar to AA sequence:RefSeq:WP_012606213.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020548122.1
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014912324.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004952184.1
COORDINATES: similar to AA sequence:RefSeq:WP_010064205.1
RHS repeat-associated core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018555019.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018555018.1
COORDINATES: similar to AA sequence:RefSeq:WP_013003299.1
COORDINATES: similar to AA sequence:RefSeq:WP_010636425.1
COORDINATES: protein motif:HMM:NF025030.2
COORDINATES: similar to AA sequence:RefSeq:WP_004944756.1
COORDINATES: similar to AA sequence:RefSeq:WP_012382128.1
GO:0045027 - DNA end binding [Evidence IEA]
GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010063844.1
COORDINATES: similar to AA sequence:RefSeq:WP_010045075.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
glyceraldehyde 3-phosphate dehydrogenase NAD-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004992367.1
COORDINATES: similar to AA sequence:RefSeq:WP_003964517.1
GO:0019836 - hemolysis by symbiont of host erythrocytes [Evidence IEA]
COORDINATES: protein motif:HMM:NF024589.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010064698.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_018106296.1
COORDINATES: similar to AA sequence:RefSeq:WP_016828368.1
COORDINATES: protein motif:HMM:NF013180.2
COORDINATES: similar to AA sequence:RefSeq:WP_010064714.1
COORDINATES: similar to AA sequence:RefSeq:WP_007445967.1
COORDINATES: protein motif:HMM:NF025052.2
COORDINATES: protein motif:HMM:NF012514.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019074399.1
COORDINATES: similar to AA sequence:RefSeq:WP_018524322.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677500.1
COORDINATES: similar to AA sequence:RefSeq:WP_018569243.1
COORDINATES: similar to AA sequence:RefSeq:WP_014158443.1
COORDINATES: similar to AA sequence:RefSeq:WP_014158346.1
COORDINATES: similar to AA sequence:RefSeq:WP_014158345.1
COORDINATES: similar to AA sequence:RefSeq:WP_017586218.1
COORDINATES: similar to AA sequence:RefSeq:WP_009712666.1
COORDINATES: similar to AA sequence:RefSeq:WP_007453320.1
COORDINATES: protein motif:HMM:NF024743.2
DUF4097 family beta strand repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018569248.1
COORDINATES: similar to AA sequence:RefSeq:WP_011109703.1
COORDINATES: similar to AA sequence:RefSeq:WP_011109702.1
COORDINATES: similar to AA sequence:RefSeq:WP_010064740.1
COORDINATES: similar to AA sequence:RefSeq:WP_018522975.1
COORDINATES: similar to AA sequence:RefSeq:WP_018522959.1
COORDINATES: similar to AA sequence:RefSeq:WP_018569256.1
COORDINATES: similar to AA sequence:RefSeq:WP_018554949.1
COORDINATES: similar to AA sequence:RefSeq:WP_007445994.1
COORDINATES: similar to AA sequence:RefSeq:WP_007445995.1
COORDINATES: similar to AA sequence:RefSeq:WP_018554947.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677466.1
COORDINATES: protein motif:HMM:NF017103.2
COORDINATES: protein motif:HMM:TIGR01596.1
GO:0004521 - endoribonuclease activity [Evidence IEA]
GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010064753.1
GO:0005575 - cellular_component [Evidence IEA]
GO:0003674 - molecular_function [Evidence IEA]
type I-C CRISPR-associated protein Cas5c
COORDINATES: protein motif:HMM:NF021243.2
type I-C CRISPR-associated protein Cas8c/Csd1
COORDINATES: similar to AA sequence:RefSeq:WP_010357662.1
type I-C CRISPR-associated protein Cas7/Csd2
COORDINATES: similar to AA sequence:RefSeq:WP_010357660.1
GO:0004518 - nuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010357659.1
GO:0004519 - endonuclease activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
GO:0051607 - defense response to virus [Evidence IEA]; GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
type I-C CRISPR-associated endonuclease Cas1c
COORDINATES: similar to AA sequence:RefSeq:WP_010357658.1
COORDINATES: similar to AA sequence:RefSeq:WP_086558180.1
COORDINATES: similar to AA sequence:RefSeq:WP_007449540.1
COORDINATES: similar to AA sequence:RefSeq:WP_005321418.1
COORDINATES: protein motif:HMM:NF012873.2
COORDINATES: similar to AA sequence:RefSeq:WP_013226227.1
GO:0003934 - GTP cyclohydrolase I activity [Evidence IEA]
GO:0042559 - pteridine-containing compound biosynthetic process [Evidence IEA]; GO:0046654 - tetrahydrofolate biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012711.2
COORDINATES: protein motif:HMM:NF012901.2
COORDINATES: protein motif:HMM:NF013411.2
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: protein motif:HMM:NF017760.2
COORDINATES: similar to AA sequence:RefSeq:WP_006335593.1
NAD(P)-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016825552.1
COORDINATES: similar to AA sequence:RefSeq:WP_009715601.1
COORDINATES: similar to AA sequence:RefSeq:WP_010062838.1
COORDINATES: similar to AA sequence:RefSeq:WP_018537035.1
IucA/IucC family siderophore biosynthesis protein
COORDINATES: similar to AA sequence:RefSeq:WP_019435902.1
amino acid ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018512592.1
COORDINATES: similar to AA sequence:RefSeq:WP_007824590.1
GO:0016805 - dipeptidase activity [Evidence IEA]; GO:0008237 - metallopeptidase activity [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006348903.1
COORDINATES: protein motif:HMM:NF024950.2
COORDINATES: similar to AA sequence:RefSeq:WP_018957419.1
COORDINATES: similar to AA sequence:RefSeq:WP_008745670.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018891001.1
COORDINATES: similar to AA sequence:RefSeq:WP_016827713.1
COORDINATES: similar to AA sequence:RefSeq:WP_010982452.1
COORDINATES: similar to AA sequence:RefSeq:WP_015655558.1
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010468244.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_019980733.1
COORDINATES: similar to AA sequence:RefSeq:WP_010468246.1
GO:0016757 - glycosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019330279.1
COORDINATES: similar to AA sequence:RefSeq:WP_019330278.1
COORDINATES: protein motif:HMM:NF024949.2
COORDINATES: similar to AA sequence:RefSeq:WP_018566681.1
COORDINATES: similar to AA sequence:RefSeq:WP_012377534.1
COORDINATES: protein motif:HMM:NF039693.1
COORDINATES: similar to AA sequence:RefSeq:WP_010982322.1
leucine zipper domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003967742.1
COORDINATES: similar to AA sequence:RefSeq:WP_018489427.1
COORDINATES: similar to AA sequence:RefSeq:WP_018489426.1
COORDINATES: similar to AA sequence:RefSeq:WP_003967739.1
COORDINATES: similar to AA sequence:RefSeq:WP_012377421.1
COORDINATES: similar to AA sequence:RefSeq:WP_009332786.1
COORDINATES: similar to AA sequence:RefSeq:WP_010061167.1
COORDINATES: protein motif:HMM:NF012298.2
COORDINATES: similar to AA sequence:RefSeq:WP_007448914.1
GO:0004672 - protein kinase activity [Evidence IEA]
GO:0006468 - protein phosphorylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009760545.1
COORDINATES: similar to AA sequence:RefSeq:WP_004948586.1
COORDINATES: similar to AA sequence:RefSeq:WP_004948583.1
COORDINATES: similar to AA sequence:RefSeq:WP_018571792.1
COORDINATES: similar to AA sequence:RefSeq:WP_018640124.1
COORDINATES: similar to AA sequence:RefSeq:WP_003957981.1
COORDINATES: similar to AA sequence:RefSeq:WP_007446959.1
COORDINATES: similar to AA sequence:RefSeq:WP_015579827.1
COORDINATES: similar to AA sequence:RefSeq:WP_015579826.1
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019055252.1
COORDINATES: protein motif:HMM:NF033580.1
COORDINATES: similar to AA sequence:RefSeq:WP_019354477.1
COORDINATES: similar to AA sequence:RefSeq:WP_003963883.1
COORDINATES: similar to AA sequence:RefSeq:WP_007457467.1
COORDINATES: protein motif:HMM:NF016430.2
sigma-70 family RNA polymerase sigma factor
COORDINATES: protein motif:HMM:NF019886.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma factor-like helix-turn-helix DNA-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_005483685.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008739412.1
COORDINATES: similar to AA sequence:RefSeq:WP_007490436.1
COORDINATES: protein motif:HMM:NF039695.1
COORDINATES: protein motif:HMM:NF021030.2
type I-E CRISPR-associated protein Cse1/CasA