Procambarus clarkii strain Jiangsu linkage group LG90, ASM2042438v2, whole genome shotgun sequence.
Procambarus clarkii (red swamp crayfish)
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Pleocyemata; Astacidea; Astacoidea; Cambaridae; Procambarus.
A chromosome-level reference genome of red swamp crayfish Procambarus clarkii provides insights into the gene families regarding growth or development in crustaceans
REFSEQ INFORMATION: The reference sequence is identical to\nCM035562.1.\nAssembly name: ASM2042438v2\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Freshwater Fisheries Research\nInstitute of Jiangsu Province, Nanjing 210017, China on 2021/10/12.\nThe original whole-genome shotgun project has the accession\nJAIWQB000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Freshwater Fisheries Research Institute\n of Jiangsu Province, Nanjing 210017,\n China\nAssembly Method :: LACHESIS v. may-2020\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: PacBio RS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Procambarus clarkii Annotation\n Release 100\nAnnotation Version :: 100\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 9.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##
Derived by automated computational analysis using gene prediction method: Gnomon.
long-chain-fatty-acid--CoA ligase 1-like, transcript variant X3
COORDINATES: polyA evidence [ECO:0006239]
long-chain-fatty-acid--CoA ligase 1-like, transcript variant X1
long-chain-fatty-acid--CoA ligase 1-like, transcript variant X2
long-chain-fatty-acid--CoA ligase 1-like, transcript variant X4
long-chain-fatty-acid--CoA ligase 1-like isoform X2
long-chain-fatty-acid--CoA ligase 1-like isoform X1
long-chain-fatty-acid--CoA ligase 1-like isoform X3
mitochondrial 2-oxodicarboxylate carrier-like
SET and MYND domain-containing protein 4-like, transcript variant X2
SET and MYND domain-containing protein 4-like, transcript variant X3
SET and MYND domain-containing protein 4-like, transcript variant X1
SET and MYND domain-containing protein 4-like, transcript variant X4
SET and MYND domain-containing protein 4-like, transcript variant X5
SET and MYND domain-containing protein 4-like, transcript variant X6
SET and MYND domain-containing protein 4-like
echinoderm microtubule-associated protein-like 5, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
echinoderm microtubule-associated protein-like 5, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
echinoderm microtubule-associated protein-like 5 isoform X1
echinoderm microtubule-associated protein-like 5, transcript variant X3
echinoderm microtubule-associated protein-like 5 isoform X2
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA lysine (anticodon UUU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
neuronal acetylcholine receptor subunit alpha-7-like
neuronal acetylcholine receptor subunit alpha-10-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 18% coverage of the annotated genomic feature by RNAseq alignments
probable enoyl-CoA hydratase, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 36 samples with support for all annotated introns
probable enoyl-CoA hydratase, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 90 samples with support for all annotated introns
uncharacterized LOC123746688, transcript variant X1
uncharacterized LOC123746688, transcript variant X4
uncharacterized LOC123746688, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
uncharacterized LOC123746688, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
uncharacterized LOC123746688, transcript variant X2
uncharacterized protein LOC123746688 isoform X1
uncharacterized protein LOC123746688 isoform X3
uncharacterized protein LOC123746688 isoform X4
uncharacterized protein LOC123746688 isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
PR domain zinc finger protein 10-like isoform X2
zinc finger protein 771-like, transcript variant X2
zinc finger protein 771-like, transcript variant X1
zinc finger protein 771-like, transcript variant X3
zinc finger protein 771-like, transcript variant X4
zinc finger protein 771-like, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
uncharacterized protein LOC123746692 isoform X1
zinc finger protein 2-like, transcript variant X2
zinc finger protein 2-like, transcript variant X1
zinc finger protein 2-like, transcript variant X4
zinc finger protein 2-like, transcript variant X5
zinc finger protein 2-like, transcript variant X6
zinc finger protein 2-like, transcript variant X3
zinc finger protein 2-like, transcript variant X7
oocyte zinc finger protein XlCOF8.4-like isoform X2
uncharacterized protein LOC123746695 isoform X2
nematocyst expressed protein 4-like, transcript variant X2
nematocyst expressed protein 4-like, transcript variant X1
nematocyst expressed protein 4-like, transcript variant X3
nematocyst expressed protein 4-like isoform X2
nematocyst expressed protein 4-like isoform X1
beta-arrestin-1-like, transcript variant X2
beta-arrestin-1-like, transcript variant X1
beta-arrestin-1-like, transcript variant X4
beta-arrestin-1-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
uncharacterized LOC123746698, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
uncharacterized LOC123746698, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
uncharacterized LOC123746698, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
uncharacterized LOC123746698, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
E3 ubiquitin-protein ligase Mdm2-like, transcript variant X3
E3 ubiquitin-protein ligase Mdm2-like, transcript variant X1
E3 ubiquitin-protein ligase Mdm2-like, transcript variant X2
E3 ubiquitin-protein ligase Mdm2-like, transcript variant X4
E3 ubiquitin-protein ligase Mdm2-like isoform X3
E3 ubiquitin-protein ligase Mdm2-like isoform X1
E3 ubiquitin-protein ligase Mdm2-like isoform X4
E3 ubiquitin-protein ligase Mdm2-like isoform X2
uncharacterized LOC123746702, transcript variant X1
uncharacterized LOC123746702, transcript variant X2
protein yippee-like 2, transcript variant X2
protein yippee-like 2, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
serine/threonine-protein kinase CTR1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
ribosomal protein 63, mitochondrial-like
small nuclear ribonucleoprotein Sm D1-like
RING-type E3 ubiquitin-protein ligase PPIL2-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 33 samples with support for all annotated introns
NADH-ubiquinone oxidoreductase 49 kDa subunit-like
probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial, transcript variant X1
probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial, transcript variant X2
probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial, transcript variant X3
probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1
probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X2
probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X3
activin receptor type-2A-like, transcript variant X2
activin receptor type-2A-like, transcript variant X1
activin receptor type-2A-like, transcript variant X3
activin receptor type-2A-like isoform X2
activin receptor type-2A-like isoform X1
acetyl-CoA acetyltransferase, cytosolic-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 51 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: dynein heavy chain, cytoplasmic-like
kinesin-like protein KIF12, transcript variant X2
kinesin-like protein KIF12, transcript variant X1
kinesin-like protein KIF12, transcript variant X3
kinesin-like protein KIF12, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
probable maleylacetoacetate isomerase 2, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 30 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 98 samples with support for all annotated introns
probable maleylacetoacetate isomerase 2, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 30 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 40 samples with support for all annotated introns
probable maleylacetoacetate isomerase 2 isoform X2
probable maleylacetoacetate isomerase 2 isoform X1
uncharacterized LOC123746720, transcript variant X8
uncharacterized LOC123746720, transcript variant X6
uncharacterized LOC123746720, transcript variant X5
uncharacterized LOC123746720, transcript variant X4
uncharacterized LOC123746720, transcript variant X1
uncharacterized LOC123746720, transcript variant X2
uncharacterized LOC123746720, transcript variant X9
uncharacterized LOC123746720, transcript variant X7
uncharacterized LOC123746720, transcript variant X3
uncharacterized LOC123746720, transcript variant X10
uncharacterized protein LOC123746720 isoform X2
uncharacterized protein LOC123746720 isoform X1
uncharacterized protein LOC123746720 isoform X3
uncharacterized protein LOC123746720 isoform X4
histone-lysine N-methyltransferase ASHR1-like, transcript variant X2
histone-lysine N-methyltransferase ASHR1-like, transcript variant X1
histone-lysine N-methyltransferase ASHR1-like isoform X1
histone-lysine N-methyltransferase ASHR1-like isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
transfer RNA tryptophan (anticodon CCA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 89% coverage of the annotated genomic feature by RNAseq alignments
ribosomal large subunit pseudouridine synthase B-like
2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase-like
probable aminopeptidase NPEPL1, transcript variant X2
probable aminopeptidase NPEPL1, transcript variant X1
probable aminopeptidase NPEPL1 isoform X1
probable aminopeptidase NPEPL1 isoform X2
probable aminopeptidase NPEPL1, transcript variant X3
probable aminopeptidase NPEPL1 isoform X3
thioredoxin-related transmembrane protein 2 homolog
protein amalgam-like, transcript variant X2
protein amalgam-like, transcript variant X1
protein amalgam-like, transcript variant X3
protein amalgam-like, transcript variant X4
uncharacterized protein LOC123746727 isoform X4
limbic system-associated membrane protein-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 98% coverage of the annotated genomic feature by RNAseq alignments, including 34 samples with support for all annotated introns
uncharacterized LOC123746637, transcript variant X2
uncharacterized LOC123746637, transcript variant X1
putative neural-cadherin 2, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
putative neural-cadherin 2, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
putative neural-cadherin 2, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
putative neural-cadherin 2, transcript variant X5
putative neural-cadherin 2, transcript variant X2
uncharacterized LOC123746731, transcript variant X2
uncharacterized LOC123746731, transcript variant X1
uncharacterized LOC123746731, transcript variant X3
SUMO-interacting motif-containing protein 1-like
protein phosphatase 1K, mitochondrial-like, transcript variant X5
protein phosphatase 1K, mitochondrial-like, transcript variant X2
protein phosphatase 1K, mitochondrial-like, transcript variant X6
protein phosphatase 1K, mitochondrial-like, transcript variant X3
protein phosphatase 1K, mitochondrial-like, transcript variant X4
protein phosphatase 1K, mitochondrial-like, transcript variant X7
protein phosphatase 1K, mitochondrial-like, transcript variant X1
protein phosphatase 1K, mitochondrial-like
26S proteasome non-ATPase regulatory subunit 12-like, transcript variant X2
26S proteasome non-ATPase regulatory subunit 12-like, transcript variant X1
26S proteasome non-ATPase regulatory subunit 12-like, transcript variant X3
26S proteasome non-ATPase regulatory subunit 12-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 2 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
tRNA pseudouridine synthase Pus10-like, transcript variant X1
tRNA pseudouridine synthase Pus10-like, transcript variant X2
tRNA pseudouridine synthase Pus10-like isoform X1
tRNA pseudouridine synthase Pus10-like isoform X2
serine/threonine-protein kinase DCLK1-like, transcript variant X2
serine/threonine-protein kinase DCLK1-like, transcript variant X1
serine/threonine-protein kinase DCLK1-like, transcript variant X3
serine/threonine-protein kinase DCLK1-like, transcript variant X4
serine/threonine-protein kinase DCLK1-like, transcript variant X6
serine/threonine-protein kinase DCLK1-like, transcript variant X5
serine/threonine-protein kinase DCLK1-like isoform X1
serine/threonine-protein kinase DCLK1-like isoform X2
serine/threonine-protein kinase DCLK1-like isoform X3
serine/threonine-protein kinase DCLK1-like isoform X5
serine/threonine-protein kinase DCLK1-like isoform X4
NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like
SCY1-like protein 2, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 11% coverage of the annotated genomic feature by RNAseq alignments
SCY1-like protein 2, transcript variant X2
SCY1-like protein 2, transcript variant X1
SCY1-like protein 2, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 178 Proteins
cytochrome P450 2D14-like, transcript variant X4
cytochrome P450 2D14-like, transcript variant X2
cytochrome P450 2D14-like, transcript variant X3
cytochrome P450 2D14-like, transcript variant X1
ankyrin repeat domain-containing protein 17-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 14% coverage of the annotated genomic feature by RNAseq alignments