Procambarus clarkii strain Jiangsu linkage group LG88, ASM2042438v2, whole genome shotgun sequence.
Procambarus clarkii (red swamp crayfish)
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Pleocyemata; Astacidea; Astacoidea; Cambaridae; Procambarus.
A chromosome-level reference genome of red swamp crayfish Procambarus clarkii provides insights into the gene families regarding growth or development in crustaceans
REFSEQ INFORMATION: The reference sequence is identical to\nCM035560.1.\nAssembly name: ASM2042438v2\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Freshwater Fisheries Research\nInstitute of Jiangsu Province, Nanjing 210017, China on 2021/10/12.\nThe original whole-genome shotgun project has the accession\nJAIWQB000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Freshwater Fisheries Research Institute\n of Jiangsu Province, Nanjing 210017,\n China\nAssembly Method :: LACHESIS v. may-2020\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: PacBio RS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Procambarus clarkii Annotation\n Release 100\nAnnotation Version :: 100\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 9.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##
Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
fibril-forming collagen alpha chain-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 26 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 86% coverage of the annotated genomic feature by RNAseq alignments
transcription initiation factor TFIID subunit 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 64 samples with support for all annotated introns
COORDINATES: polyA evidence [ECO:0006239]
dehydrogenase/reductase SDR family member 4-like
ATP synthase lipid-binding protein, mitochondrial-like
signal recognition particle receptor subunit alpha-like
vacuolar protein sorting-associated protein 45-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 29 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 92 samples with support for all annotated introns
similar to RNA sequence (same species):INSD:GARH01036708.1
annotated by transcript or proteomic data
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 356 bases not found in genome assembly
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 356 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
probable chitinase 10, transcript variant X2
probable chitinase 10, transcript variant X3
probable chitinase 10, transcript variant X1
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA threonine (anticodon CGU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
heparan sulfate glucosamine 3-O-sulfotransferase 5-like, transcript variant X8
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
heparan sulfate glucosamine 3-O-sulfotransferase 5-like, transcript variant X9
heparan sulfate glucosamine 3-O-sulfotransferase 5-like, transcript variant X6
heparan sulfate glucosamine 3-O-sulfotransferase 5-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
heparan sulfate glucosamine 3-O-sulfotransferase 5-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
heparan sulfate glucosamine 3-O-sulfotransferase 5-like, transcript variant X3
heparan sulfate glucosamine 3-O-sulfotransferase 5-like isoform X6
heparan sulfate glucosamine 3-O-sulfotransferase 5-like isoform X3
heparan sulfate glucosamine 3-O-sulfotransferase 5-like isoform X2
heparan sulfate glucosamine 3-O-sulfotransferase 5-like isoform X1
heparan sulfate glucosamine 3-O-sulfotransferase 5-like isoform X8
heparan sulfate glucosamine 3-O-sulfotransferase 5-like, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
heparan sulfate glucosamine 3-O-sulfotransferase 1-like isoform X5
heparan sulfate glucosamine 3-O-sulfotransferase 5-like, transcript variant X7
heparan sulfate glucosamine 3-O-sulfotransferase 1-like isoform X7
heparan sulfate glucosamine 3-O-sulfotransferase 5-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns
heparan sulfate glucosamine 3-O-sulfotransferase 5-like isoform X4
heparan sulfate glucosamine 3-O-sulfotransferase 5-like, transcript variant X10
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
uncharacterized LOC123746265, transcript variant X2
uncharacterized LOC123746265, transcript variant X1
uncharacterized protein LOC123746265 isoform X1
uncharacterized protein LOC123746265 isoform X2
uncharacterized LOC123746267, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
uncharacterized LOC123746267, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 38 samples with support for all annotated introns
uncharacterized protein LOC123746267 isoform X2
uncharacterized protein LOC123746267 isoform X1
dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase-like, transcript variant X3
dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase-like, transcript variant X2
dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase-like, transcript variant X1
dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase-like isoform X3
dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase-like isoform X2
dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase-like isoform X1
MATH and LRR domain-containing protein PFE0570w-like
sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1-like, transcript variant X2
sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1-like, transcript variant X3
sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1-like, transcript variant X1
sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1-like isoform X3
sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1-like isoform X2
sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1-like isoform X1
DNA polymerase delta subunit 2-like, transcript variant X1
similar to RNA sequence (same species):INSD:GARH01030404.1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 298 bases not found in genome assembly
DNA polymerase delta subunit 2-like, transcript variant X2
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 226 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
vesicle-associated membrane protein 7-like
neuropeptide F-like, transcript variant X1
neuropeptide F-like, transcript variant X3
neuropeptide F-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
uncharacterized protein LOC123746169 isoform X1
uncharacterized protein LOC123746169 isoform X2
60S ribosomal protein L44-like, transcript variant X2
60S ribosomal protein L44-like, transcript variant X1
60S ribosomal protein L44-like isoform X2
60S ribosomal protein L44-like isoform X1
acidic leucine-rich nuclear phosphoprotein 32 family member B-like, transcript variant X2
acidic leucine-rich nuclear phosphoprotein 32 family member B-like, transcript variant X1
stimulated by retinoic acid gene 8 protein-like isoform X1
acidic leucine-rich nuclear phosphoprotein 32 family member B-like isoform X2
transfer RNA threonine (anticodon AGU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments
transfer RNA arginine (anticodon ACG); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
protein madd-4-like, transcript variant X10
similar to RNA sequence (same species):INSD:GBEV01014627.1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 817 bases not found in genome assembly
protein madd-4-like, transcript variant X9
protein madd-4-like, transcript variant X4
protein madd-4-like, transcript variant X3
protein madd-4-like, transcript variant X8
protein madd-4-like, transcript variant X7
protein madd-4-like, transcript variant X2
protein madd-4-like, transcript variant X1
protein madd-4-like, transcript variant X5
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 817 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
protein madd-4-like, transcript variant X6
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 528 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
uncharacterized LOC123746280, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
uncharacterized LOC123746280, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
SANT and BTB domain regulator of class switch recombination-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
SANT and BTB domain regulator of class switch recombination-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
SANT and BTB domain regulator of class switch recombination-like, transcript variant X2
SANT and BTB domain regulator of class switch recombination-like isoform X3
keratin-associated protein 16-1-like isoform X1
keratin-associated protein 16-1-like isoform X2
R3H domain-containing protein 4-like, transcript variant X2
R3H domain-containing protein 4-like, transcript variant X3
R3H domain-containing protein 4-like, transcript variant X1
R3H domain-containing protein 4-like isoform X1
R3H domain-containing protein 4-like isoform X2
protein-L-isoaspartate(D-aspartate) O-methyltransferase-like, transcript variant X1
protein-L-isoaspartate(D-aspartate) O-methyltransferase-like, transcript variant X5
protein-L-isoaspartate(D-aspartate) O-methyltransferase-like, transcript variant X4
protein-L-isoaspartate(D-aspartate) O-methyltransferase-like, transcript variant X2
protein-L-isoaspartate(D-aspartate) O-methyltransferase-like, transcript variant X3
protein-L-isoaspartate(D-aspartate) O-methyltransferase-like isoform X1
protein-L-isoaspartate(D-aspartate) O-methyltransferase-like isoform X2
protein-L-isoaspartate(D-aspartate) O-methyltransferase-like isoform X3
DNA mismatch repair protein Msh3-like, transcript variant X4
DNA mismatch repair protein Msh3-like, transcript variant X1
DNA mismatch repair protein Msh3-like, transcript variant X2
DNA mismatch repair protein Msh3-like, transcript variant X3
DNA mismatch repair protein Msh3-like, transcript variant X5
serine/arginine repetitive matrix protein 2-like, transcript variant X3
serine/arginine repetitive matrix protein 2-like, transcript variant X1
serine/arginine repetitive matrix protein 2-like, transcript variant X4
serine/arginine repetitive matrix protein 2-like isoform X1
serine/arginine repetitive matrix protein 2-like, transcript variant X2
serine/arginine repetitive matrix protein 2-like isoform X2
elongation factor 1-delta-like, transcript variant X3
elongation factor 1-delta-like, transcript variant X1
elongation factor 1-delta-like, transcript variant X2
elongation factor 1-delta-like, transcript variant X4
elongation factor 1-delta-like isoform X2
elongation factor 1-delta-like isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 95% coverage of the annotated genomic feature by RNAseq alignments
translocation protein SEC63 homolog, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 32 samples with support for all annotated introns
translocation protein SEC63 homolog, transcript variant X1
translocation protein SEC63 homolog, transcript variant X2
translocation protein SEC63 homolog isoform X1
translocation protein SEC63 homolog isoform X2
translocation protein SEC63 homolog isoform X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
cuticle protein AM1199-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 26 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
cuticle protein AM1199-like, transcript variant X4
cuticle protein AM1199-like, transcript variant X6
cuticle protein AM1199-like, transcript variant X3
cuticle protein AM1199-like, transcript variant X5
cuticle protein AM1199-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 27 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 26 Proteins, and 70% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
glycine-rich cell wall structural protein-like
uncharacterized LOC123746305, transcript variant X2
uncharacterized LOC123746305, transcript variant X1
uncharacterized LOC123746305, transcript variant X3
glycine-rich cell wall structural protein-like, transcript variant X1
glycine-rich cell wall structural protein-like, transcript variant X2
glycine-rich cell wall structural protein-like isoform X1
keratin, type I cytoskeletal 9-like isoform X2
uncharacterized PE-PGRS family protein PE_PGRS46-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 27 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
uncharacterized PE-PGRS family protein PE_PGRS46-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 27 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
uncharacterized PE-PGRS family protein PE_PGRS46-like isoform X2
uncharacterized PE-PGRS family protein PE_PGRS54-like isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 26 Proteins, and 19% coverage of the annotated genomic feature by RNAseq alignments
endocuticle structural glycoprotein SgAbd-1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
uncharacterized LOC123746307, transcript variant X1
uncharacterized LOC123746307, transcript variant X2
uncharacterized protein LOC123746307 isoform X1
uncharacterized protein LOC123746307 isoform X2
uncharacterized LOC123746312, transcript variant X2
uncharacterized LOC123746312, transcript variant X4
uncharacterized protein LOC123746312 isoform X3
uncharacterized LOC123746312, transcript variant X5
uncharacterized LOC123746312, transcript variant X6
uncharacterized LOC123746312, transcript variant X3
uncharacterized LOC123746312, transcript variant X1
uncharacterized protein LOC123746312 isoform X4
uncharacterized protein LOC123746312 isoform X5
uncharacterized protein LOC123746312 isoform X1
uncharacterized protein LOC123746312 isoform X2
organic solute transporter subunit alpha-like
SET domain-containing protein SmydA-8-like, transcript variant X2
SET domain-containing protein SmydA-8-like, transcript variant X1
SET domain-containing protein SmydA-8-like
guanine nucleotide-binding protein G(olf) subunit alpha-like, transcript variant X2
ras-related protein Rab-27A-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 22 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
ras-related protein Rab-27A-like, transcript variant X1
ras-related protein Rab-27A-like, transcript variant X2
guanine nucleotide-binding protein G(olf) subunit alpha-like isoform X2
ras-related protein Rab-27A-like, transcript variant X4
guanine nucleotide-binding protein G(olf) subunit alpha-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 41 samples with support for all annotated introns
guanine nucleotide-binding protein G(olf) subunit alpha-like isoform X1
ras-related protein Rab-27A-like, transcript variant X5
ubiquitin carboxyl-terminal hydrolase 30-like, transcript variant X2
ubiquitin carboxyl-terminal hydrolase 30-like, transcript variant X3
ubiquitin carboxyl-terminal hydrolase 30-like, transcript variant X1
ubiquitin carboxyl-terminal hydrolase 30-like isoform X3
ubiquitin carboxyl-terminal hydrolase 30-like isoform X1
ubiquitin carboxyl-terminal hydrolase 30-like isoform X2
UDP-glucose:glycoprotein glucosyltransferase 1-like, transcript variant X1
UDP-glucose:glycoprotein glucosyltransferase 1-like, transcript variant X4
UDP-glucose:glycoprotein glucosyltransferase 1-like, transcript variant X3
UDP-glucose:glycoprotein glucosyltransferase 1-like, transcript variant X2
UDP-glucose:glycoprotein glucosyltransferase 1-like isoform X1
UDP-glucose:glycoprotein glucosyltransferase 1-like isoform X2
uncharacterized LOC123746175, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
uncharacterized LOC123746175, transcript variant X1
IQ motif and SEC7 domain-containing protein 1-like, transcript variant X13
IQ motif and SEC7 domain-containing protein 1-like, transcript variant X12
IQ motif and SEC7 domain-containing protein 1-like, transcript variant X7
IQ motif and SEC7 domain-containing protein 1-like, transcript variant X8
IQ motif and SEC7 domain-containing protein 1-like, transcript variant X10
IQ motif and SEC7 domain-containing protein 1-like, transcript variant X9
IQ motif and SEC7 domain-containing protein 1-like, transcript variant X11
IQ motif and SEC7 domain-containing protein 1-like, transcript variant X6
IQ motif and SEC7 domain-containing protein 1-like, transcript variant X14
IQ motif and SEC7 domain-containing protein 1-like, transcript variant X4
IQ motif and SEC7 domain-containing protein 1-like, transcript variant X15
IQ motif and SEC7 domain-containing protein 1-like, transcript variant X2
IQ motif and SEC7 domain-containing protein 1-like, transcript variant X3
IQ motif and SEC7 domain-containing protein 1-like, transcript variant X1
IQ motif and SEC7 domain-containing protein 1-like, transcript variant X17
IQ motif and SEC7 domain-containing protein 1-like, transcript variant X16
IQ motif and SEC7 domain-containing protein 1-like isoform X10
IQ motif and SEC7 domain-containing protein 1-like isoform X9
IQ motif and SEC7 domain-containing protein 1-like isoform X7
IQ motif and SEC7 domain-containing protein 1-like isoform X6
IQ motif and SEC7 domain-containing protein 1-like isoform X8
IQ motif and SEC7 domain-containing protein 1-like isoform X11
IQ motif and SEC7 domain-containing protein 1-like isoform X4
IQ motif and SEC7 domain-containing protein 1-like isoform X12
IQ motif and SEC7 domain-containing protein 1-like isoform X3
IQ motif and SEC7 domain-containing protein 1-like isoform X2
IQ motif and SEC7 domain-containing protein 1-like isoform X1
IQ motif and SEC7 domain-containing protein 1-like isoform X14
IQ motif and SEC7 domain-containing protein 1-like isoform X13
IQ motif and SEC7 domain-containing protein 1-like, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
IQ motif and SEC7 domain-containing protein 1-like isoform X5
centromere/kinetochore protein zw10 homolog, transcript variant X2
centromere/kinetochore protein zw10 homolog, transcript variant X1
centromere/kinetochore protein zw10 homolog isoform X1
centromere/kinetochore protein zw10 homolog isoform X2
centromere/kinetochore protein zw10 homolog, transcript variant X3
centromere/kinetochore protein zw10 homolog isoform X3
centromere/kinetochore protein zw10 homolog, transcript variant X8
centromere/kinetochore protein zw10 homolog, transcript variant X7
centromere/kinetochore protein zw10 homolog, transcript variant X5
centromere/kinetochore protein zw10 homolog, transcript variant X6
centromere/kinetochore protein zw10 homolog, transcript variant X4
centromere/kinetochore protein zw10 homolog isoform X4
60S ribosomal protein L12-like, transcript variant X3
60S ribosomal protein L12-like, transcript variant X4
60S ribosomal protein L12-like, transcript variant X2
60S ribosomal protein L12-like, transcript variant X1
putative uncharacterized protein DDB_G0271982, transcript variant X6
putative uncharacterized protein DDB_G0271982, transcript variant X3
putative uncharacterized protein DDB_G0271982, transcript variant X5
putative uncharacterized protein DDB_G0271982, transcript variant X10
putative uncharacterized protein DDB_G0271982, transcript variant X11
putative uncharacterized protein DDB_G0271982, transcript variant X1
putative uncharacterized protein DDB_G0271982, transcript variant X4
putative uncharacterized protein DDB_G0271982, transcript variant X2
putative uncharacterized protein DDB_G0271982, transcript variant X7
putative uncharacterized protein DDB_G0271982, transcript variant X8
putative uncharacterized protein DDB_G0271982, transcript variant X9
high mobility group protein 20A-like isoform X2
high mobility group protein 20A-like isoform X1
putative uncharacterized protein DDB_G0271982 isoform X3
serine/threonine-protein kinase PRP4 homolog
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments
transfer RNA alanine (anticodon UGC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA alanine (anticodon AGC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transcription factor SPT20 homolog, transcript variant X1
transcription factor SPT20 homolog, transcript variant X2
transcription factor SPT20 homolog isoform X1
transcription factor SPT20 homolog isoform X2
transforming growth factor-beta receptor-associated protein 1-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
transforming growth factor-beta receptor-associated protein 1-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 87 samples with support for all annotated introns
transforming growth factor-beta receptor-associated protein 1-like
nucleoside diphosphate-linked moiety X motif 17-like, transcript variant X1
nucleoside diphosphate-linked moiety X motif 17-like isoform X1
nucleoside diphosphate-linked moiety X motif 17-like, transcript variant X2
nucleoside diphosphate-linked moiety X motif 17-like isoform X2
phosphoenolpyruvate carboxykinase, cytosolic [GTP]-like
phosphoenolpyruvate carboxykinase, cytosolic [GTP]-like, transcript variant X1
phosphoenolpyruvate carboxykinase, cytosolic [GTP]-like isoform X1
phosphoenolpyruvate carboxykinase, cytosolic [GTP]-like, transcript variant X2
phosphoenolpyruvate carboxykinase, cytosolic [GTP]-like isoform X2
methylosome subunit pICln-like, transcript variant X2
methylosome subunit pICln-like, transcript variant X1
methylosome subunit pICln-like isoform X2
methylosome subunit pICln-like isoform X1
nucleoside diphosphate-linked moiety X motif 17-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 90% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
cytochrome P450 CYP12A2-like, transcript variant X1
cytochrome P450 CYP12A2-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 37 samples with support for all annotated introns
classical arabinogalactan protein 9-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
leucine-rich repeat extensin-like protein 5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 65% coverage of the annotated genomic feature by RNAseq alignments
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like
uncharacterized protein DKFZp434B061-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 40% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 7% coverage of the annotated genomic feature by RNAseq alignments
ras-related protein Rab-35-like, transcript variant X3
ras-related protein Rab-35-like, transcript variant X4
ras-related protein Rab-35-like isoform X3
ras-related protein Rab-35-like isoform X4
ras-related protein Rab-35-like, transcript variant X1
ras-related protein Rab-35-like, transcript variant X2
ras-related protein Rab-35-like, transcript variant X5
ras-related protein Rab-35-like isoform X1
ras-related protein Rab-35-like isoform X2
tigger transposable element-derived protein 1-like
zinc metalloproteinase nas-4-like, transcript variant X2
zinc metalloproteinase nas-4-like, transcript variant X1
uncharacterized LOC123746346, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 40 samples with support for all annotated introns
uncharacterized protein LOC123746346 isoform X2
uncharacterized LOC123746346, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
uncharacterized LOC123746346, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 29 samples with support for all annotated introns
uncharacterized LOC123746346, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
uncharacterized protein LOC123746346 isoform X1
uncharacterized protein LOC123746346 isoform X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
repetitive proline-rich cell wall protein 2-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 50 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 69 samples with support for all annotated introns
uncharacterized LOC123746348, transcript variant X1
uncharacterized LOC123746348, transcript variant X2
integrin alpha-5-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
integrin alpha-5-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
integrin alpha-5-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
integrin alpha-5-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns
uncharacterized LOC123746351, transcript variant X1
uncharacterized LOC123746351, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
uncharacterized LOC123746351, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-like isoform X2
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-like isoform X1
probable phospholipid-transporting ATPase IIB, transcript variant X3
probable phospholipid-transporting ATPase IIB, transcript variant X1
probable phospholipid-transporting ATPase IIB, transcript variant X4
probable phospholipid-transporting ATPase IIB, transcript variant X5
probable phospholipid-transporting ATPase IIB, transcript variant X2
probable phospholipid-transporting ATPase IIB
uncharacterized LOC123746355, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
uncharacterized LOC123746355, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 31 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
uncharacterized LOC123746356, transcript variant X1
uncharacterized LOC123746356, transcript variant X3
uncharacterized LOC123746356, transcript variant X2
uncharacterized protein LOC123746356 isoform X1
uncharacterized protein LOC123746356 isoform X2
similar to RNA sequence (same species):INSD:GBEV01066524.1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 130 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 84% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 130 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
cysteine-rich with EGF-like domain protein 2, transcript variant X3
cysteine-rich with EGF-like domain protein 2, transcript variant X1
cysteine-rich with EGF-like domain protein 2, transcript variant X4
cysteine-rich with EGF-like domain protein 2, transcript variant X2
cysteine-rich with EGF-like domain protein 2 isoform X3
cysteine-rich with EGF-like domain protein 2 isoform X1
cysteine-rich with EGF-like domain protein 2 isoform X4
cysteine-rich with EGF-like domain protein 2 isoform X2
RNA-binding protein NOB1-like, transcript variant X2
RNA-binding protein NOB1-like, transcript variant X1
RNA-binding protein NOB1-like, transcript variant X4
RNA-binding protein NOB1-like, transcript variant X3
RNA-binding protein NOB1-like isoform X4
RNA-binding protein NOB1-like isoform X2
RNA-binding protein NOB1-like isoform X1
RNA-binding protein NOB1-like isoform X3
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, transcript variant X1
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, transcript variant X2
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, transcript variant X3
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, transcript variant X4
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1
serine/arginine repetitive matrix protein 2-like
transmembrane protein 198-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
transmembrane protein 198-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
transmembrane protein 198-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
cysteine-rich, acidic integral membrane protein-like
glutenin, high molecular weight subunit PW212-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
protein CREBRF homolog, transcript variant X3
protein CREBRF homolog, transcript variant X1
protein CREBRF homolog, transcript variant X2
protein CREBRF homolog, transcript variant X5
protein CREBRF homolog, transcript variant X4
GPI ethanolamine phosphate transferase 3-like, transcript variant X1
GPI ethanolamine phosphate transferase 3-like, transcript variant X2
GPI ethanolamine phosphate transferase 3-like isoform X1
GPI ethanolamine phosphate transferase 3-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
GPI ethanolamine phosphate transferase 3-like isoform X2
elongation factor Tu-like, transcript variant X1
elongation factor Tu-like, transcript variant X2
leucine-rich repeat protein soc-2 homolog, transcript variant X1
leucine-rich repeat protein soc-2 homolog, transcript variant X5
leucine-rich repeat protein soc-2 homolog, transcript variant X3
leucine-rich repeat protein soc-2 homolog, transcript variant X4
leucine-rich repeat protein soc-2 homolog, transcript variant X2
leucine-rich repeat protein soc-2 homolog, transcript variant X7
leucine-rich repeat protein soc-2 homolog, transcript variant X8
leucine-rich repeat protein soc-2 homolog, transcript variant X6
leucine-rich repeat protein soc-2 homolog isoform X5
leucine-rich repeat protein SHOC-2-like isoform X1
leucine-rich repeat protein soc-2 homolog isoform X6
leucine-rich repeat protein SHOC-2-like isoform X2
leucine-rich repeat protein SHOC-2-like isoform X3
leucine-rich repeat protein soc-2 homolog isoform X4
luc7-like protein 3, transcript variant X3
luc7-like protein 3, transcript variant X2
luc7-like protein 3, transcript variant X1
X-ray repair cross-complementing protein 5-like, transcript variant X1
X-ray repair cross-complementing protein 5-like, transcript variant X2
X-ray repair cross-complementing protein 5-like, transcript variant X3
X-ray repair cross-complementing protein 5-like isoform X1
X-ray repair cross-complementing protein 5-like isoform X2
X-ray repair cross-complementing protein 5-like isoform X3
5-phosphohydroxy-L-lysine phospho-lyase-like, transcript variant X7
5-phosphohydroxy-L-lysine phospho-lyase-like, transcript variant X3
5-phosphohydroxy-L-lysine phospho-lyase-like, transcript variant X6
5-phosphohydroxy-L-lysine phospho-lyase-like, transcript variant X2
5-phosphohydroxy-L-lysine phospho-lyase-like, transcript variant X4
5-phosphohydroxy-L-lysine phospho-lyase-like, transcript variant X5
5-phosphohydroxy-L-lysine phospho-lyase-like, transcript variant X1
5-phosphohydroxy-L-lysine phospho-lyase-like isoform X2
5-phosphohydroxy-L-lysine phospho-lyase-like isoform X1
TATA-binding protein-associated factor 2N-like, transcript variant X1
TATA-binding protein-associated factor 2N-like, transcript variant X2
TATA-binding protein-associated factor 2N-like isoform X1
glycine-rich cell wall structural protein-like isoform X2
TATA-binding protein-associated factor 2N-like
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: TATA-binding protein-associated factor 2N-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
neuropeptide-like protein 31, transcript variant X2
neuropeptide-like protein 31, transcript variant X1
keratin-associated protein 19-2-like isoform X1
keratin-associated protein 19-2-like, transcript variant X2
keratin-associated protein 19-2-like, transcript variant X1
keratin-associated protein 19-2-like isoform X2
TATA-binding protein-associated factor 2N-like, transcript variant X4
TATA-binding protein-associated factor 2N-like, transcript variant X3
TATA-binding protein-associated factor 2N-like isoform X2
ATP-dependent RNA helicase A-like isoform X4
TATA-binding protein-associated factor 2N-like isoform X3
heterogeneous nuclear ribonucleoprotein A3 homolog 1-like
glycine, alanine and asparagine-rich protein-like
holotricin-3-like, transcript variant X2
rRNA 2'-O-methyltransferase fibrillarin-like isoform X2
holotricin-3-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 81 samples with support for all annotated introns
decapping and exoribonuclease protein-like
eukaryotic translation initiation factor 4E-binding protein 1-like
DNA-directed DNA/RNA polymerase mu-like, transcript variant X3
DNA-directed DNA/RNA polymerase mu-like, transcript variant X1
DNA-directed DNA/RNA polymerase mu-like, transcript variant X2
DNA-directed DNA/RNA polymerase mu-like, transcript variant X4
DNA-directed DNA/RNA polymerase mu-like, transcript variant X5
DNA-directed DNA/RNA polymerase mu-like isoform X1
DNA-directed DNA/RNA polymerase mu-like isoform X2
DNA-directed DNA/RNA polymerase mu-like isoform X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 76 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:12.0:RF00001
coiled-coil domain-containing protein 8-like
fibrous sheath CABYR-binding protein-like
GATA zinc finger domain-containing protein 14-like
serine protease snake-like, transcript variant X5
serine protease snake-like, transcript variant X3
serine protease snake-like, transcript variant X2
uncharacterized protein LOC123746413 isoform X2
serine protease snake-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
uncharacterized protein LOC123746413 isoform X4
serine protease snake-like, transcript variant X1
uncharacterized protein LOC123746413 isoform X1
integrin-linked protein kinase-like, transcript variant X1
integrin-linked protein kinase-like, transcript variant X2
integrin-linked protein kinase-like, transcript variant X3
zinc finger protein 37 homolog, transcript variant X3
zinc finger protein 37 homolog, transcript variant X4
zinc finger protein 37 homolog, transcript variant X1
zinc finger protein 37 homolog, transcript variant X5
zinc finger protein 37 homolog, transcript variant X2
sodium/potassium/calcium exchanger 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns