Procambarus clarkii strain Jiangsu linkage group LG80, ASM2042438v2, whole genome shotgun sequence.
Procambarus clarkii (red swamp crayfish)
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Pleocyemata; Astacidea; Astacoidea; Cambaridae; Procambarus.
A chromosome-level reference genome of red swamp crayfish Procambarus clarkii provides insights into the gene families regarding growth or development in crustaceans
REFSEQ INFORMATION: The reference sequence is identical to\nCM035552.1.\nAssembly name: ASM2042438v2\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Freshwater Fisheries Research\nInstitute of Jiangsu Province, Nanjing 210017, China on 2021/10/12.\nThe original whole-genome shotgun project has the accession\nJAIWQB000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Freshwater Fisheries Research Institute\n of Jiangsu Province, Nanjing 210017,\n China\nAssembly Method :: LACHESIS v. may-2020\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: PacBio RS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Procambarus clarkii Annotation\n Release 100\nAnnotation Version :: 100\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 9.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##
Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
putative uncharacterized protein FLJ45035
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 40% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized outer membrane protein YpjA-like
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA isoleucine (anticodon AAU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA cysteine (anticodon GCA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
uncharacterized LOC123774831, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
uncharacterized LOC123774831, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
uncharacterized protein LOC123774831 isoform X1
uncharacterized protein LOC123774831 isoform X2
uncharacterized LOC123774858, transcript variant X5
COORDINATES: polyA evidence [ECO:0006239]
uncharacterized LOC123774858, transcript variant X2
uncharacterized LOC123774858, transcript variant X1
uncharacterized LOC123774858, transcript variant X3
uncharacterized LOC123774858, transcript variant X6
uncharacterized protein LOC123774858 isoform X3
uncharacterized protein LOC123774858 isoform X5
uncharacterized protein LOC123774858 isoform X2
uncharacterized protein LOC123774858 isoform X1
uncharacterized protein LOC123774858 isoform X6
uncharacterized LOC123774858, transcript variant X4
uncharacterized protein LOC123774858 isoform X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 368 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 75% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
probable G-protein coupled receptor Mth-like 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 96% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 89% coverage of the annotated genomic feature by RNAseq alignments
protein RNA-directed DNA methylation 3-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized LOC123774863, transcript variant X2
uncharacterized protein LOC123774863 isoform X2
uncharacterized LOC123774863, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
uncharacterized protein LOC123774863 isoform X1
neurogenic locus notch homolog protein 2-like, transcript variant X1
neurogenic locus notch homolog protein 2-like, transcript variant X2
neurogenic locus notch homolog protein 2-like
galactose-specific lectin nattectin-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 50 samples with support for all annotated introns
C-type mannose receptor 2-like, transcript variant X3
C-type mannose receptor 2-like, transcript variant X1
C-type mannose receptor 2-like, transcript variant X2
C-type mannose receptor 2-like isoform X1
uncharacterized protein LOC123774867 isoform X2
similar to RNA sequence (same species):INSD:GBEV01037576.1
annotated by transcript or proteomic data
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 323 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
uncharacterized LOC123774873, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns
uncharacterized LOC123774873, transcript variant X2
similar to RNA sequence (same species):INSD:GARH01034788.1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 630 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 485 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC123774877, transcript variant X2
uncharacterized LOC123774877, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
neuronal acetylcholine receptor subunit alpha-10-like, transcript variant X1
neuronal acetylcholine receptor subunit alpha-10-like, transcript variant X3
neuronal acetylcholine receptor subunit alpha-10-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
neuronal acetylcholine receptor subunit alpha-10-like
histone-lysine N-methyltransferase 2D-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 98% coverage of the annotated genomic feature by RNAseq alignments
cysteine-rich, acidic integral membrane protein-like
uncharacterized LOC123774879, transcript variant X1
uncharacterized LOC123774879, transcript variant X2
uncharacterized protein LOC123774879 isoform X2
uncharacterized protein LOC123774879 isoform X1
uncharacterized LOC123774881, transcript variant X1
uncharacterized LOC123774881, transcript variant X2
uncharacterized protein LOC123774881 isoform X1
uncharacterized protein LOC123774881 isoform X2
uncharacterized LOC123774882, transcript variant X2
uncharacterized LOC123774882, transcript variant X1
uncharacterized protein LOC123774882 isoform X1
uncharacterized protein LOC123774882 isoform X2
voltage-dependent calcium channel subunit alpha-2/delta-3-like, transcript variant X2
similar to RNA sequence (same species):INSD:GARH01016262.1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 970 bases not found in genome assembly
voltage-dependent calcium channel subunit alpha-2/delta-3-like, transcript variant X15
voltage-dependent calcium channel subunit alpha-2/delta-3-like, transcript variant X9
voltage-dependent calcium channel subunit alpha-2/delta-3-like, transcript variant X6
voltage-dependent calcium channel subunit alpha-2/delta-3-like, transcript variant X8
voltage-dependent calcium channel subunit alpha-2/delta-3-like, transcript variant X5
voltage-dependent calcium channel subunit alpha-2/delta-3-like, transcript variant X3
voltage-dependent calcium channel subunit alpha-2/delta-3-like, transcript variant X11
voltage-dependent calcium channel subunit alpha-2/delta-3-like, transcript variant X7
voltage-dependent calcium channel subunit alpha-2/delta-3-like, transcript variant X4
voltage-dependent calcium channel subunit alpha-2/delta-3-like, transcript variant X14
voltage-dependent calcium channel subunit alpha-2/delta-3-like, transcript variant X12
voltage-dependent calcium channel subunit alpha-2/delta-3-like, transcript variant X10
voltage-dependent calcium channel subunit alpha-2/delta-3-like, transcript variant X1
voltage-dependent calcium channel subunit alpha-2/delta-3-like, transcript variant X13
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 862 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
voltage-dependent calcium channel subunit alpha-2/delta-3-like isoform X2
voltage-dependent calcium channel subunit alpha-2/delta-3-like isoform X15
voltage-dependent calcium channel subunit alpha-2/delta-3-like isoform X9
voltage-dependent calcium channel subunit alpha-2/delta-3-like isoform X6
voltage-dependent calcium channel subunit alpha-2/delta-3-like isoform X8
voltage-dependent calcium channel subunit alpha-2/delta-3-like isoform X5
voltage-dependent calcium channel subunit alpha-2/delta-3-like isoform X3
voltage-dependent calcium channel subunit alpha-2/delta-3-like isoform X11
voltage-dependent calcium channel subunit alpha-2/delta-3-like isoform X7
voltage-dependent calcium channel subunit alpha-2/delta-3-like isoform X4
voltage-dependent calcium channel subunit alpha-2/delta-3-like isoform X14
voltage-dependent calcium channel subunit alpha-2/delta-3-like isoform X12
voltage-dependent calcium channel subunit alpha-2/delta-3-like isoform X10
voltage-dependent calcium channel subunit alpha-2/delta-3-like isoform X1
voltage-dependent calcium channel subunit alpha-2/delta-3-like isoform X13
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
glucosamine-6-phosphate isomerase-like, transcript variant X3
glucosamine-6-phosphate isomerase-like, transcript variant X1
glucosamine-6-phosphate isomerase-like, transcript variant X2
glucosamine-6-phosphate isomerase-like isoform X1
glucosamine-6-phosphate isomerase-like isoform X2
similar to RNA sequence (same species):INSD:GARH01038233.1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 274 bases not found in genome assembly
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 204 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC123774891, transcript variant X1
uncharacterized LOC123774891, transcript variant X2
uncharacterized protein LOC123774891 isoform X1
uncharacterized protein LOC123774891 isoform X2
attractin-like protein 1, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
attractin-like protein 1, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
attractin-like protein 1, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 56 samples with support for all annotated introns
afadin- and alpha-actinin-binding protein B-like, transcript variant X1
afadin- and alpha-actinin-binding protein B-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
afadin- and alpha-actinin-binding protein B-like
beta-1,3-galactosyltransferase 1-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 65 samples with support for all annotated introns
beta-1,3-galactosyltransferase 1-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 32 samples with support for all annotated introns
beta-1,3-galactosyltransferase 1-like isoform X1
beta-1,3-galactosyltransferase 1-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 43 samples with support for all annotated introns
beta-1,3-galactosyltransferase 1-like isoform X2
protein amalgam-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
protein amalgam-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
cytoplasmic tRNA 2-thiolation protein 2-A-like, transcript variant X3
cytoplasmic tRNA 2-thiolation protein 2-A-like, transcript variant X2
cytoplasmic tRNA 2-thiolation protein 2-A-like, transcript variant X1
cytoplasmic tRNA 2-thiolation protein 2-A-like, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 28 samples with support for all annotated introns
cytoplasmic tRNA 2-thiolation protein 2-A-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 62 samples with support for all annotated introns
cytoplasmic tRNA 2-thiolation protein 2-A-like, transcript variant X7
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
cytoplasmic tRNA 2-thiolation protein 2-A-like, transcript variant X6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns
cytoplasmic tRNA 2-thiolation protein 2-A-like
facilitated trehalose transporter Tret1-like, transcript variant X2
facilitated trehalose transporter Tret1-like, transcript variant X3
facilitated trehalose transporter Tret1-like, transcript variant X1
facilitated trehalose transporter Tret1-like
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:12.0:RF00004
argininosuccinate lyase-like, transcript variant X1
argininosuccinate lyase-like, transcript variant X2
argininosuccinate lyase-like, transcript variant X3
UPF0696 protein C11orf68 homolog, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 101 samples with support for all annotated introns
UPF0696 protein C11orf68 homolog, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 51 samples with support for all annotated introns
uncharacterized LOC123774901, transcript variant X2
uncharacterized protein LOC123774901 isoform X2
uncharacterized LOC123774901, transcript variant X1
uncharacterized protein LOC123774901 isoform X1
disks large 1 tumor suppressor protein-like, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 84 samples with support for all annotated introns
disks large 1 tumor suppressor protein-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
disks large 1 tumor suppressor protein-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 61 samples with support for all annotated introns
disks large 1 tumor suppressor protein-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 37 samples with support for all annotated introns
disks large 1 tumor suppressor protein-like isoform X4
disks large 1 tumor suppressor protein-like isoform X3
disks large 1 tumor suppressor protein-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 85% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 79% coverage of the annotated genomic feature by RNAseq alignments
uridine-cytidine kinase-like 1, transcript variant X5
uridine-cytidine kinase-like 1 isoform X4
uridine-cytidine kinase-like 1, transcript variant X4
uridine-cytidine kinase-like 1, transcript variant X3
uridine-cytidine kinase-like 1, transcript variant X2
uridine-cytidine kinase-like 1, transcript variant X1
uridine-cytidine kinase-like 1 isoform X2
uridine-cytidine kinase-like 1 isoform X1
uridine-cytidine kinase-like 1 isoform X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 70% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
transfer RNA threonine (anticodon CGU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
oxysterol-binding protein homolog C2F12.05c-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins