Procambarus clarkii strain Jiangsu linkage group LG77, ASM2042438v2, whole genome shotgun sequence.
Procambarus clarkii (red swamp crayfish)
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Pleocyemata; Astacidea; Astacoidea; Cambaridae; Procambarus.
A chromosome-level reference genome of red swamp crayfish Procambarus clarkii provides insights into the gene families regarding growth or development in crustaceans
REFSEQ INFORMATION: The reference sequence is identical to\nCM035549.1.\nAssembly name: ASM2042438v2\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Freshwater Fisheries Research\nInstitute of Jiangsu Province, Nanjing 210017, China on 2021/10/12.\nThe original whole-genome shotgun project has the accession\nJAIWQB000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Freshwater Fisheries Research Institute\n of Jiangsu Province, Nanjing 210017,\n China\nAssembly Method :: LACHESIS v. may-2020\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: PacBio RS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Procambarus clarkii Annotation\n Release 100\nAnnotation Version :: 100\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 9.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##
Derived by automated computational analysis using gene prediction method: Gnomon.
COORDINATES: polyA evidence [ECO:0006239]
poly(U)-binding-splicing factor PUF60-like, transcript variant X6
poly(U)-binding-splicing factor PUF60-like, transcript variant X2
poly(U)-binding-splicing factor PUF60-like, transcript variant X4
poly(U)-binding-splicing factor PUF60-like, transcript variant X1
poly(U)-binding-splicing factor PUF60-like, transcript variant X3
poly(U)-binding-splicing factor PUF60-like, transcript variant X10
poly(U)-binding-splicing factor PUF60-like, transcript variant X7
poly(U)-binding-splicing factor PUF60-like, transcript variant X8
poly(U)-binding-splicing factor PUF60-like, transcript variant X11
poly(U)-binding-splicing factor PUF60-like, transcript variant X12
poly(U)-binding-splicing factor PUF60-like, transcript variant X5
poly(U)-binding-splicing factor PUF60-like, transcript variant X9
poly(U)-binding-splicing factor PUF60-like isoform X3
poly(U)-binding-splicing factor PUF60-like isoform X6
poly(U)-binding-splicing factor PUF60-like isoform X4
poly(U)-binding-splicing factor PUF60-like isoform X2
poly(U)-binding-splicing factor PUF60-like isoform X1
poly(U)-binding-splicing factor PUF60-like isoform X5
poly(U)-binding-splicing factor PUF60-like isoform X7
Krueppel homolog 1-like, transcript variant X1
Krueppel homolog 1-like, transcript variant X2
TCF3 fusion partner homolog, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
TCF3 fusion partner homolog, transcript variant X1
DISP complex protein LRCH3-like, transcript variant X7
DISP complex protein LRCH3-like, transcript variant X5
DISP complex protein LRCH3-like isoform X7
DISP complex protein LRCH3-like isoform X5
DISP complex protein LRCH3-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
DISP complex protein LRCH3-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 50 samples with support for all annotated introns
DISP complex protein LRCH3-like, transcript variant X1
DISP complex protein LRCH3-like, transcript variant X6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 44 samples with support for all annotated introns
DISP complex protein LRCH3-like, transcript variant X4
leucine-rich repeat and calponin homology domain-containing protein 1-like isoform X6
DISP complex protein LRCH3-like isoform X2
leucine-rich repeat and calponin homology domain-containing protein 1-like isoform X4
DISP complex protein LRCH3-like isoform X3
DISP complex protein LRCH3-like isoform X1
serine-rich adhesin for platelets-like, transcript variant X1
serine-rich adhesin for platelets-like isoform X1
serine-rich adhesin for platelets-like, transcript variant X2
serine-rich adhesin for platelets-like isoform X2
stress-induced-phosphoprotein 1-like, transcript variant X1
stress-induced-phosphoprotein 1-like, transcript variant X2
stress-induced-phosphoprotein 1-like isoform X1
stress-induced-phosphoprotein 1-like isoform X2
leukotriene A-4 hydrolase-like, transcript variant X2
leukotriene A-4 hydrolase-like, transcript variant X1
leukotriene A-4 hydrolase-like isoform X1
leukotriene A-4 hydrolase-like isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 91% coverage of the annotated genomic feature by RNAseq alignments
DNA-directed RNA polymerase II subunit RPB1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 58 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 46 Proteins, and 69% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 37 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 26 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
pollen-specific leucine-rich repeat extensin-like protein 3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 67 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 94% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 28 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 30 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
cuticle protein 7-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 22 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
cuticle protein 7-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 15% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 76% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 97% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 92% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
leucine-rich repeat extensin-like protein 3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 73% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 74% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 71% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 75% coverage of the annotated genomic feature by RNAseq alignments
UDP-galactose translocator-like, transcript variant X8
UDP-galactose translocator-like, transcript variant X6
UDP-galactose translocator-like, transcript variant X5
UDP-galactose translocator-like, transcript variant X7
UDP-galactose translocator-like, transcript variant X4
UDP-galactose translocator-like, transcript variant X1
UDP-galactose translocator-like, transcript variant X2
UDP-galactose translocator-like, transcript variant X3
UDP-galactose translocator-like isoform X2
UDP-N-acetylglucosamine transporter-like isoform X1
dynein regulatory complex subunit 5-like
nuclear pore complex protein Nup98-Nup96-like, transcript variant X9
nuclear pore complex protein Nup98-Nup96-like, transcript variant X10
nuclear pore complex protein Nup98-Nup96-like, transcript variant X1
nuclear pore complex protein Nup98-Nup96-like, transcript variant X6
nuclear pore complex protein Nup98-Nup96-like, transcript variant X8
nuclear pore complex protein Nup98-Nup96-like, transcript variant X2
nuclear pore complex protein Nup98-Nup96-like, transcript variant X3
nuclear pore complex protein Nup98-Nup96-like, transcript variant X7
nuclear pore complex protein Nup98-Nup96-like, transcript variant X5
nuclear pore complex protein Nup98-Nup96-like, transcript variant X4
nuclear pore complex protein Nup98-Nup96-like isoform X2
nuclear pore complex protein Nup98-Nup96-like isoform X3
nuclear pore complex protein Nup98-Nup96-like isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
protein tofu-2-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 41 samples with support for all annotated introns
protein tofu-2-like, transcript variant X1
protein tofu-2-like, transcript variant X3
protein tofu-2-like, transcript variant X2
proprotein convertase subtilisin/kexin type 7-like
NTF2-related export protein 2-like, transcript variant X1
NTF2-related export protein 2-like, transcript variant X2
NTF2-related export protein 2-like isoform X1
NTF2-related export protein 2-like isoform X2
PHD finger protein rhinoceros-like, transcript variant X1
PHD finger protein rhinoceros-like, transcript variant X2
PHD finger protein rhinoceros-like isoform X1
PHD finger protein rhinoceros-like, transcript variant X3
PHD finger protein rhinoceros-like isoform X2
pyridoxal-dependent decarboxylase domain-containing protein 1-like, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
pyridoxal-dependent decarboxylase domain-containing protein 1-like, transcript variant X6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 29 samples with support for all annotated introns
pyridoxal-dependent decarboxylase domain-containing protein 1-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 80 samples with support for all annotated introns
pyridoxal-dependent decarboxylase domain-containing protein 1-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 65 samples with support for all annotated introns
pyridoxal-dependent decarboxylase domain-containing protein 1-like, transcript variant X7
pyridoxal-dependent decarboxylase domain-containing protein 1-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 43 samples with support for all annotated introns
pyridoxal-dependent decarboxylase domain-containing protein 1-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
pyridoxal-dependent decarboxylase domain-containing protein 1-like isoform X1
pyridoxal-dependent decarboxylase domain-containing protein 1-like isoform X3
pyridoxal-dependent decarboxylase domain-containing protein 1-like isoform X2
pyridoxal-dependent decarboxylase domain-containing protein 1-like isoform X4
zygotic DNA replication licensing factor mcm6-B-like
protein PTHB1-like, transcript variant X4
protein PTHB1-like, transcript variant X8
protein PTHB1-like, transcript variant X6
protein PTHB1-like, transcript variant X5
protein PTHB1-like, transcript variant X7
protein PTHB1-like, transcript variant X1
protein PTHB1-like, transcript variant X2
protein PTHB1-like, transcript variant X3
protein PTHB1-like, transcript variant X9
glutathione S-transferase 1-like, transcript variant X1
glutathione S-transferase 1-like, transcript variant X2
mitogen-activated protein kinase kinase kinase 11-like, transcript variant X6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
mitogen-activated protein kinase kinase kinase 11-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
mitogen-activated protein kinase kinase kinase 11-like, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 30 samples with support for all annotated introns
mitogen-activated protein kinase kinase kinase 11-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
mitogen-activated protein kinase kinase kinase 11-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
mitogen-activated protein kinase kinase kinase 11-like, transcript variant X1
mitogen-activated protein kinase kinase kinase 9-like isoform X6
mitogen-activated protein kinase kinase kinase 10-like isoform X4
mitogen-activated protein kinase kinase kinase 21-like isoform X5
mitogen-activated protein kinase kinase kinase 10-like isoform X3
mitogen-activated protein kinase kinase kinase 11-like isoform X2
mitogen-activated protein kinase kinase kinase 11-like isoform X1
pecanex-like protein 1, transcript variant X1
pecanex-like protein 1, transcript variant X2
pecanex-like protein 1, transcript variant X3
uncharacterized LOC123774383, transcript variant X1
uncharacterized LOC123774383, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
zinc phosphodiesterase ELAC protein 1-like
CCA tRNA nucleotidyltransferase 1, mitochondrial-like
haloalkane dehalogenase-like, transcript variant X1
haloalkane dehalogenase-like, transcript variant X2
probable tRNA (guanine(26)-N(2))-dimethyltransferase
transcription termination factor, mitochondrial-like, transcript variant X2
transcription termination factor, mitochondrial-like, transcript variant X3
transcription termination factor, mitochondrial-like isoform X1
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA leucine (anticodon UAG); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transcription termination factor, mitochondrial-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 65 samples with support for all annotated introns
transcription termination factor, mitochondrial-like, transcript variant X4
transcription termination factor, mitochondrial-like isoform X2
venom protein 164-like, transcript variant X2
venom protein 164-like, transcript variant X1
uncharacterized protein LOC123774394 isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transfer RNA glutamic acid (anticodon UUC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
protein DDI1 homolog 2-like, transcript variant X4
protein DDI1 homolog 2-like, transcript variant X2
protein DDI1 homolog 2-like, transcript variant X3
protein DDI1 homolog 2-like, transcript variant X1
protein DDI1 homolog 2-like, transcript variant X6
protein DDI1 homolog 2-like, transcript variant X5
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:12.0:RF00012
COORDINATES: nucleotide motif:Rfam:12.0:RF00003
equilibrative nucleoside transporter 4-like
sedoheptulokinase-like, transcript variant X4
sedoheptulokinase-like, transcript variant X1
sedoheptulokinase-like, transcript variant X2
sedoheptulokinase-like, transcript variant X3
centromere protein V-like, transcript variant X1
centromere protein V-like, transcript variant X2
transfer RNA isoleucine (anticodon UAU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
uncharacterized LOC123774404, transcript variant X2
uncharacterized LOC123774404, transcript variant X5
uncharacterized LOC123774404, transcript variant X7
uncharacterized LOC123774404, transcript variant X1
uncharacterized LOC123774404, transcript variant X4
uncharacterized LOC123774404, transcript variant X6
uncharacterized LOC123774404, transcript variant X3
uncharacterized protein LOC123774404 isoform X2
uncharacterized protein LOC123774404 isoform X1
uncharacterized protein C11orf24 homolog
uncharacterized LOC123774405, transcript variant X4
uncharacterized LOC123774405, transcript variant X1
uncharacterized LOC123774405, transcript variant X2
uncharacterized LOC123774405, transcript variant X3
uncharacterized LOC123774405, transcript variant X5
uncharacterized LOC123774405, transcript variant X6
uncharacterized LOC123774405, transcript variant X7
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
glucose transporter type 1-like, transcript variant X13
glucose transporter type 1-like, transcript variant X12
glucose transporter type 1-like, transcript variant X6
glucose transporter type 1-like isoform X6
glucose transporter type 1-like, transcript variant X7
glucose transporter type 1-like, transcript variant X2
glucose transporter type 1-like, transcript variant X3
glucose transporter type 1-like, transcript variant X4
glucose transporter type 1-like, transcript variant X1
glucose transporter type 1-like, transcript variant X5
glucose transporter type 1-like, transcript variant X15
glucose transporter type 1-like isoform X7
glucose transporter type 1-like isoform X2
glucose transporter type 1-like isoform X3
glucose transporter type 1-like isoform X4
glucose transporter type 1-like isoform X1
glucose transporter type 1-like isoform X5
glucose transporter type 1-like isoform X12
glucose transporter type 1-like, transcript variant X11
glucose transporter type 1-like, transcript variant X10
glucose transporter type 1-like isoform X10
glucose transporter type 1-like, transcript variant X9
glucose transporter type 1-like, transcript variant X8
glucose transporter type 1-like isoform X9
glucose transporter type 1-like isoform X8
glucose transporter type 1-like, transcript variant X14
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
glucose transporter type 1-like isoform X11
28S ribosomal protein S10, mitochondrial-like, transcript variant X2
28S ribosomal protein S10, mitochondrial-like, transcript variant X1
28S ribosomal protein S10, mitochondrial-like isoform X2
28S ribosomal protein S10, mitochondrial-like isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
protein regulator of cytokinesis 1-like, transcript variant X1
protein regulator of cytokinesis 1-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
centrosomal protein 43-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 99 samples with support for all annotated introns
centrosomal protein 43-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments
paternally-expressed gene 3 protein-like, transcript variant X2
paternally-expressed gene 3 protein-like, transcript variant X1
paternally-expressed gene 3 protein-like isoform X2
paternally-expressed gene 3 protein-like isoform X1
GATOR complex protein Iml1-like, transcript variant X1
GATOR complex protein Iml1-like, transcript variant X5
GATOR complex protein Iml1-like, transcript variant X2
GATOR complex protein Iml1-like, transcript variant X3
GATOR complex protein Iml1-like, transcript variant X4
GATOR complex protein Iml1-like, transcript variant X6
GATOR complex protein Iml1-like, transcript variant X7
GATOR complex protein Iml1-like isoform X1
GATOR complex protein Iml1-like isoform X5
GATOR complex protein Iml1-like isoform X6
GATOR complex protein Iml1-like isoform X2
GATOR complex protein Iml1-like isoform X7
GATOR complex protein Iml1-like isoform X3
GATOR complex protein Iml1-like isoform X4
uncharacterized LOC123774416, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
uncharacterized LOC123774416, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 68 samples with support for all annotated introns
uncharacterized protein LOC123774416 isoform X1
uncharacterized protein LOC123774416 isoform X2
uncharacterized PE-PGRS family protein PE_PGRS54-like isoform X2
uncharacterized PE-PGRS family protein PE_PGRS54-like isoform X1
uncharacterized PE-PGRS family protein PE_PGRS54-like isoform X3
phosphatidylinositol-glycan biosynthesis class X protein-like, transcript variant X2
phosphatidylinositol-glycan biosynthesis class X protein-like, transcript variant X1
phosphatidylinositol-glycan biosynthesis class X protein-like, transcript variant X3
phosphatidylinositol-glycan biosynthesis class X protein-like
uncharacterized LOC123774420, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
uncharacterized LOC123774420, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
uncharacterized LOC123774420, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
uncharacterized LOC123774420, transcript variant X3
uncharacterized LOC123774420, transcript variant X1
uncharacterized protein LOC123774420 isoform X1
uncharacterized protein LOC123774420 isoform X3
uncharacterized protein LOC123774420 isoform X4
uncharacterized protein LOC123774420 isoform X2
leucine-rich repeat extensin-like protein 3, transcript variant X1
leucine-rich repeat extensin-like protein 3, transcript variant X2
leucine-rich repeat extensin-like protein 3 isoform X1
leucine-rich repeat extensin-like protein 3 isoform X2
leucine-rich repeat extensin-like protein 3, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns
4-hydroxybutyrate coenzyme A transferase-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
uncharacterized LOC123774425, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
uncharacterized LOC123774425, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
uncharacterized LOC123774425, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 49 samples with support for all annotated introns
uncharacterized LOC123774425, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 36 samples with support for all annotated introns
uncharacterized LOC123774425, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 34 samples with support for all annotated introns
uncharacterized protein LOC123774425 isoform X2
uncharacterized protein LOC123774425 isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 62 samples with support for all annotated introns
peptidyl-tRNA hydrolase 2, mitochondrial-like
uncharacterized LOC123774429, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 43 samples with support for all annotated introns
uncharacterized LOC123774429, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 59 samples with support for all annotated introns
uncharacterized LOC123774429, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 63 samples with support for all annotated introns
uncharacterized LOC123774429, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 78% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
microprocessor complex subunit DGCR8-like
phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN-like, transcript variant X2
phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN-like, transcript variant X1
phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN-like, transcript variant X4
phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN-like, transcript variant X6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN-like, transcript variant X3
phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN-like, transcript variant X5
phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN-like, transcript variant X7
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN-like, transcript variant X10
phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN-like, transcript variant X18
phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN-like, transcript variant X13
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN-like, transcript variant X16
phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN-like, transcript variant X14
phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN-like, transcript variant X8
phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN-like, transcript variant X12
phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN-like, transcript variant X19
phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN-like, transcript variant X17
phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN-like, transcript variant X21
phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN-like, transcript variant X20
phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN-like, transcript variant X15
phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN-like, transcript variant X9
phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN-like, transcript variant X11
phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN-like, transcript variant X22
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 44 samples with support for all annotated introns
phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN-like isoform X12
phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN-like isoform X3
phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN-like isoform X16
phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN-like isoform X2
phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN-like isoform X10
phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN-like isoform X13
uncharacterized protein LOC123774433 isoform X1
phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN-like isoform X9
phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN-like isoform X4
phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN-like isoform X5
phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN-like isoform X6
phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN-like isoform X14
phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN-like isoform X7
phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN-like isoform X11
phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN-like isoform X15
phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN-like isoform X8
cleft lip and palate transmembrane protein 1 homolog
nuclear pore complex-interacting protein family member B4-like
uncharacterized LOC123774436, transcript variant X1
uncharacterized LOC123774436, transcript variant X2
uncharacterized protein LOC123774436 isoform X1
uncharacterized protein LOC123774436 isoform X2
extracellular protease inhibitor 10-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments
GATA zinc finger domain-containing protein 14-like
probable G-protein coupled receptor B0563.6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
probable serine/threonine-protein kinase samkC
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
tyrosine-protein phosphatase non-receptor type 23-like
actin cytoskeleton-regulatory complex protein pan-1-like
actin cytoskeleton-regulatory complex protein pan-1-like, transcript variant X2
actin cytoskeleton-regulatory complex protein pan-1-like, transcript variant X1
actin cytoskeleton-regulatory complex protein pan-1-like, transcript variant X3
uncharacterized LOC123774444, transcript variant X2
uncharacterized LOC123774444, transcript variant X1
uncharacterized LOC123774444, transcript variant X6
uncharacterized LOC123774444, transcript variant X3
uncharacterized LOC123774444, transcript variant X4
uncharacterized LOC123774444, transcript variant X5
uncharacterized protein LOC123774444 isoform X2
uncharacterized protein LOC123774444 isoform X1
uncharacterized protein LOC123774444 isoform X3
dual oxidase maturation factor 1-like, transcript variant X1
dual oxidase maturation factor 1-like, transcript variant X2
variant-silencing SET domain-containing protein-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
leucine-rich repeat neuronal protein 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 79% coverage of the annotated genomic feature by RNAseq alignments
SET domain-containing protein SmydA-8-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments
glucoside xylosyltransferase 1-like, transcript variant X1
glucoside xylosyltransferase 1-like, transcript variant X2
glucoside xylosyltransferase 1-like isoform X1
uncharacterized protein LOC123774450 isoform X2
variable charge X-linked protein 3B-like
V-type proton ATPase 21 kDa proteolipid subunit-like
basic salivary proline-rich protein 4-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 87% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 79% coverage of the annotated genomic feature by RNAseq alignments
glutamate receptor ionotropic, kainate glr-3-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 91% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transfer RNA threonine (anticodon UGU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
similar to RNA sequence (same species):INSD:GBEV01194457.1
annotated by transcript or proteomic data
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 549 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 65 samples with support for all annotated introns
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 389 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
soluble scavenger receptor cysteine-rich domain-containing protein SSC5D-like
baculoviral IAP repeat-containing protein 3-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 11% coverage of the annotated genomic feature by RNAseq alignments
transfer RNA threonine (anticodon CGU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: nucleotide motif:Rfam:12.0:RF00001
uncharacterized LOC123774310, transcript variant X1
uncharacterized LOC123774310, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns