Procambarus clarkii strain Jiangsu linkage group LG75, ASM2042438v2, whole genome shotgun sequence.
Procambarus clarkii (red swamp crayfish)
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Pleocyemata; Astacidea; Astacoidea; Cambaridae; Procambarus.
A chromosome-level reference genome of red swamp crayfish Procambarus clarkii provides insights into the gene families regarding growth or development in crustaceans
REFSEQ INFORMATION: The reference sequence is identical to\nCM035547.1.\nAssembly name: ASM2042438v2\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Freshwater Fisheries Research\nInstitute of Jiangsu Province, Nanjing 210017, China on 2021/10/12.\nThe original whole-genome shotgun project has the accession\nJAIWQB000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Freshwater Fisheries Research Institute\n of Jiangsu Province, Nanjing 210017,\n China\nAssembly Method :: LACHESIS v. may-2020\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: PacBio RS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Procambarus clarkii Annotation\n Release 100\nAnnotation Version :: 100\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 9.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##
Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 37 samples with support for all annotated introns
soluble calcium-activated nucleotidase 1-like, transcript variant X3
COORDINATES: polyA evidence [ECO:0006239]
soluble calcium-activated nucleotidase 1-like, transcript variant X1
soluble calcium-activated nucleotidase 1-like, transcript variant X2
soluble calcium-activated nucleotidase 1-like isoform X2
soluble calcium-activated nucleotidase 1-like isoform X3
soluble calcium-activated nucleotidase 1-like isoform X1
serine/threonine-protein kinase CTR1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
serine/threonine-protein kinase STY46-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA lysine (anticodon UUU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
polyribonucleotide nucleotidyltransferase 1, mitochondrial-like, transcript variant X1
polyribonucleotide nucleotidyltransferase 1, mitochondrial-like, transcript variant X2
polyribonucleotide nucleotidyltransferase 1, mitochondrial-like isoform X1
polyribonucleotide nucleotidyltransferase 1, mitochondrial-like isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:12.0:RF00001
nuclear pore complex protein DDB_G0274915-like
double C2-like domain-containing protein beta
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 30 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
mRNA cap guanine-N7 methyltransferase-like
pyrroline-5-carboxylate reductase 1, mitochondrial-like, transcript variant X2
pyrroline-5-carboxylate reductase 1, mitochondrial-like, transcript variant X1
pyrroline-5-carboxylate reductase 1, mitochondrial-like, transcript variant X4
pyrroline-5-carboxylate reductase 1, mitochondrial-like, transcript variant X3
pyrroline-5-carboxylate reductase 3-like isoform X2
pyrroline-5-carboxylate reductase 3-like isoform X1
pyrroline-5-carboxylate reductase 1, mitochondrial-like isoform X4
pyrroline-5-carboxylate reductase 3-like isoform X3
G protein-activated inward rectifier potassium channel 4-like, transcript variant X1
G protein-activated inward rectifier potassium channel 4-like, transcript variant X2
G protein-activated inward rectifier potassium channel 4-like isoform X1
G protein-activated inward rectifier potassium channel 4-like isoform X2
uncharacterized LOC123773878, transcript variant X1
uncharacterized LOC123773878, transcript variant X3
uncharacterized LOC123773878, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
doublesex- and mab-3-related transcription factor 2-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 32 Proteins
early endosome antigen 1-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
early endosome antigen 1-like, transcript variant X3
early endosome antigen 1-like, transcript variant X4
early endosome antigen 1-like, transcript variant X1
early endosome antigen 1-like isoform X2
early endosome antigen 1-like isoform X1
ubiquitin-like protein 3, transcript variant X1
ubiquitin-like protein 3, transcript variant X3
ubiquitin-like protein 3, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 36 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 104 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 36 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
eukaryotic translation elongation factor 1 epsilon-1-like
similar to RNA sequence (same species):INSD:GARH01036786.1
annotated by transcript or proteomic data
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 35 bases not found in genome assembly
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 35 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized transmembrane protein DDB_G0289901-like
cleavage and polyadenylation specificity factor subunit 4-like
GTP-binding protein 2-like, transcript variant X1
GTP-binding protein 2-like, transcript variant X2
serine/arginine repetitive matrix protein 1-like, transcript variant X4
serine/arginine repetitive matrix protein 1-like, transcript variant X1
serine/arginine repetitive matrix protein 1-like, transcript variant X3
serine/arginine repetitive matrix protein 1-like, transcript variant X5
serine/arginine repetitive matrix protein 1-like, transcript variant X2
serine/arginine repetitive matrix protein 1-like isoform X2
serine/arginine repetitive matrix protein 1-like isoform X4
serine/arginine repetitive matrix protein 1-like isoform X3
serine/arginine repetitive matrix protein 1-like isoform X1
serine/arginine repetitive matrix protein 2-like, transcript variant X1
serine/arginine repetitive matrix protein 2-like isoform X1
serine/arginine repetitive matrix protein 2-like, transcript variant X2
serine/arginine repetitive matrix protein 2-like, transcript variant X3
serine/arginine repetitive matrix protein 2-like, transcript variant X4
serine/arginine repetitive matrix protein 2-like isoform X2
vesicle transport protein SEC20-like, transcript variant X3
vesicle transport protein SEC20-like isoform X3
vesicle transport protein SEC20-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
vesicle transport protein SEC20-like isoform X1
vesicle transport protein SEC20-like, transcript variant X2
vesicle transport protein SEC20-like isoform X2
G-patch domain and KOW motifs-containing protein-like
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-like
tubulin alpha-8 chain-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 283 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
tubulin alpha-8 chain-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 283 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 32 samples with support for all annotated introns
uncharacterized LOC123773903, transcript variant X1
uncharacterized LOC123773903, transcript variant X3
uncharacterized LOC123773903, transcript variant X4
uncharacterized LOC123773903, transcript variant X2
protein bicaudal D-like, transcript variant X1
protein bicaudal D-like, transcript variant X2
protein bicaudal D-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
trifunctional purine biosynthetic protein adenosine-3-like
neural Wiskott-Aldrich syndrome protein-like, transcript variant X2
neural Wiskott-Aldrich syndrome protein-like, transcript variant X6
neural Wiskott-Aldrich syndrome protein-like, transcript variant X5
neural Wiskott-Aldrich syndrome protein-like, transcript variant X1
neural Wiskott-Aldrich syndrome protein-like, transcript variant X9
neural Wiskott-Aldrich syndrome protein-like, transcript variant X3
neural Wiskott-Aldrich syndrome protein-like, transcript variant X8
neural Wiskott-Aldrich syndrome protein-like, transcript variant X7
neural Wiskott-Aldrich syndrome protein-like, transcript variant X4
neural Wiskott-Aldrich syndrome protein-like isoform X1
neural Wiskott-Aldrich syndrome protein-like isoform X2
flocculation protein FLO11-like, transcript variant X1
flocculation protein FLO11-like, transcript variant X2
uncharacterized LOC123773910, transcript variant X2
uncharacterized LOC123773910, transcript variant X1
uncharacterized LOC123773910, transcript variant X3
uncharacterized LOC123773910, transcript variant X6
uncharacterized LOC123773910, transcript variant X5
uncharacterized LOC123773910, transcript variant X4
uncharacterized LOC123773910, transcript variant X9
uncharacterized LOC123773910, transcript variant X8
uncharacterized protein LOC123773910 isoform X1
uncharacterized protein LOC123773910 isoform X2
uncharacterized LOC123773910, transcript variant X7
uncharacterized protein LOC123773910 isoform X3
uncharacterized protein LOC123773910 isoform X4
glutathione S-transferase 1-1-like, transcript variant X2
glutathione S-transferase 1-1-like, transcript variant X1
glutathione S-transferase 1-1-like, transcript variant X5
glutathione S-transferase 1-1-like, transcript variant X3
glutathione S-transferase 1-1-like, transcript variant X4
glutathione S-transferase 1-1-like isoform X1
glutathione S-transferase 1-1-like isoform X2
GPI-anchored wall transfer protein 1-like, transcript variant X1
GPI-anchored wall transfer protein 1-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 46 samples with support for all annotated introns
GPI-anchored wall transfer protein 1-like isoform X1
GPI-anchored wall transfer protein 1-like isoform X2
DNA damage-inducible transcript 4-like protein
similar to RNA sequence (same species):INSD:GARH01027351.1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 405 bases not found in genome assembly
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 257 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
chondroitin sulfate N-acetylgalactosaminyltransferase 2-like
transfer RNA leucine (anticodon CAG); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
serine protease nudel-like, transcript variant X1
serine protease nudel-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 36 samples with support for all annotated introns
tumor susceptibility gene 101 protein-like, transcript variant X5
tumor susceptibility gene 101 protein-like, transcript variant X3
tumor susceptibility gene 101 protein-like, transcript variant X2
tumor susceptibility gene 101 protein-like, transcript variant X1
tumor susceptibility gene 101 protein-like, transcript variant X4
tumor susceptibility gene 101 protein-like, transcript variant X6
tumor susceptibility gene 101 protein-like, transcript variant X7
tumor susceptibility gene 101 protein-like isoform X5
tumor susceptibility gene 101 protein-like isoform X3
tumor susceptibility gene 101 protein-like isoform X2
tumor susceptibility gene 101 protein-like isoform X1
tumor susceptibility gene 101 protein-like isoform X7
tumor susceptibility gene 101 protein-like isoform X6
tumor susceptibility gene 101 protein-like isoform X4
protein IMPACT-B-like, transcript variant X2
protein IMPACT-B-like, transcript variant X3
protein IMPACT-B-like, transcript variant X1
transient receptor potential-gamma protein-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: transient receptor potential-gamma protein-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
beta-1-syntrophin-like, transcript variant X4
beta-1-syntrophin-like, transcript variant X1
beta-1-syntrophin-like, transcript variant X5
beta-1-syntrophin-like, transcript variant X2
beta-1-syntrophin-like, transcript variant X3
insulin-like growth factor-binding protein complex acid labile subunit
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
uncharacterized LOC123773937, transcript variant X1
uncharacterized LOC123773937, transcript variant X2
uncharacterized protein LOC123773937 isoform X1
uncharacterized protein LOC123773937 isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 66% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
60S ribosomal protein L15, transcript variant X1
60S ribosomal protein L15, transcript variant X2
oxysterol-binding protein-related protein 9-like, transcript variant X1
oxysterol-binding protein-related protein 9-like, transcript variant X2
oxysterol-binding protein-related protein 9-like, transcript variant X3
oxysterol-binding protein-related protein 9-like isoform X1
oxysterol-binding protein-related protein 9-like isoform X2
oxysterol-binding protein-related protein 9-like isoform X3
tubulin-specific chaperone cofactor E-like protein, transcript variant X3
tubulin-specific chaperone cofactor E-like protein, transcript variant X2
tubulin-specific chaperone cofactor E-like protein, transcript variant X1
tubulin-specific chaperone cofactor E-like protein, transcript variant X4
tubulin-specific chaperone cofactor E-like protein, transcript variant X5
tubulin-specific chaperone cofactor E-like protein
persulfide dioxygenase ETHE1, mitochondrial-like
solute carrier family 45 member 3-like, transcript variant X1
solute carrier family 45 member 3-like, transcript variant X2
carboxypeptidase B-like, transcript variant X2
carboxypeptidase B-like, transcript variant X1
nuclear factor related to kappa-B-binding protein-like, transcript variant X3
nuclear factor related to kappa-B-binding protein-like, transcript variant X2
nuclear factor related to kappa-B-binding protein-like, transcript variant X5
nuclear factor related to kappa-B-binding protein-like, transcript variant X4
nuclear factor related to kappa-B-binding protein-like, transcript variant X1
nuclear factor related to kappa-B-binding protein-like isoform X4
nuclear factor related to kappa-B-binding protein-like isoform X3
nuclear factor related to kappa-B-binding protein-like isoform X2
nuclear factor related to kappa-B-binding protein-like isoform X1
glucose-6-phosphate 1-dehydrogenase-like, transcript variant X2
glucose-6-phosphate 1-dehydrogenase-like, transcript variant X1
glucose-6-phosphate 1-dehydrogenase-like
zinc finger protein 708-like, transcript variant X2
zinc finger protein 708-like, transcript variant X1
succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial-like
glycoprotein 3-alpha-L-fucosyltransferase A-like, transcript variant X2
glycoprotein 3-alpha-L-fucosyltransferase A-like, transcript variant X1
glycoprotein 3-alpha-L-fucosyltransferase A-like, transcript variant X3
glycoprotein 3-alpha-L-fucosyltransferase A-like isoform X2
glycoprotein 3-alpha-L-fucosyltransferase A-like isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
cell growth regulator with EF hand domain protein 1-like
uncharacterized LOC123773964, transcript variant X3
uncharacterized LOC123773964, transcript variant X2
uncharacterized LOC123773964, transcript variant X1
spermatogenesis-associated protein 20-like, transcript variant X2
spermatogenesis-associated protein 20-like, transcript variant X1
spermatogenesis-associated protein 20-like, transcript variant X7
spermatogenesis-associated protein 20-like, transcript variant X6
spermatogenesis-associated protein 20-like, transcript variant X3
spermatogenesis-associated protein 20-like, transcript variant X4
spermatogenesis-associated protein 20-like isoform X2
spermatogenesis-associated protein 20-like isoform X1
spermatogenesis-associated protein 20-like isoform X4
spermatogenesis-associated protein 20-like, transcript variant X5
spermatogenesis-associated protein 20-like isoform X3
E3 ubiquitin-protein ligase RAD18-like, transcript variant X3
E3 ubiquitin-protein ligase RAD18-like, transcript variant X2
E3 ubiquitin-protein ligase RAD18-like, transcript variant X1
E3 ubiquitin-protein ligase RAD18-like, transcript variant X4
E3 ubiquitin-protein ligase RAD18-like isoform X1
uncharacterized protein LOC123773967 isoform X2
E3 ubiquitin-protein ligase RAD18-like, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
E3 ubiquitin-protein ligase RAD18-like isoform X3
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, mitochondrial-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 67 samples with support for all annotated introns
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, mitochondrial-like isoform X1
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, mitochondrial-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, mitochondrial-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, mitochondrial-like isoform X2
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, mitochondrial-like isoform X3
similar to RNA sequence (same species):INSD:GARH01020162.1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 872 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 98% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 783 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
serine/threonine-protein phosphatase 4 regulatory subunit 2-like, transcript variant X1
serine/threonine-protein phosphatase 4 regulatory subunit 2-like isoform X1
serine/threonine-protein phosphatase 4 regulatory subunit 2-like, transcript variant X2
serine/threonine-protein phosphatase 4 regulatory subunit 2-like isoform X2
deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 92% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
glutamate receptor ionotropic, kainate 2-like, transcript variant X5
glutamate receptor ionotropic, kainate 2-like isoform X5
glutamate receptor ionotropic, kainate 2-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
glutamate receptor ionotropic, kainate 2-like, transcript variant X6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
glutamate receptor ionotropic, kainate 2-like, transcript variant X3
glutamate receptor ionotropic, kainate 2-like, transcript variant X2
glutamate receptor ionotropic, kainate 2-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
glutamate receptor ionotropic, kainate 2-like isoform X6
glutamate receptor ionotropic, kainate 2-like isoform X1
glutamate receptor ionotropic, kainate 2-like isoform X3
glutamate receptor ionotropic, kainate 2-like isoform X4
glutamate receptor ionotropic, kainate 2-like isoform X2
uncharacterized LOC123773975, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
uncharacterized LOC123773975, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 37 samples with support for all annotated introns
uncharacterized LOC123773975, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
uncharacterized protein LOC123773975 isoform X2
uncharacterized protein LOC123773975 isoform X1
uncharacterized protein LOC123773975 isoform X3
TBC1 domain family member 31-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
TBC1 domain family member 31-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 72 samples with support for all annotated introns
SH3 domain-binding glutamic acid-rich protein homolog
probable U3 small nucleolar RNA-associated protein 11
sec1 family domain-containing protein 2-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
sec1 family domain-containing protein 2-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 92 samples with support for all annotated introns
sec1 family domain-containing protein 2-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns
sec1 family domain-containing protein 2-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
sec1 family domain-containing protein 2-like
palmitoyltransferase ZDHHC16B-like, transcript variant X2
palmitoyltransferase ZDHHC16B-like, transcript variant X1
actin-related protein 3-like, transcript variant X1
actin-related protein 3-like, transcript variant X2
actin-related protein 3-A-like isoform X2
vacuolar protein sorting-associated protein 4-like
fork head domain-containing protein FD4-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 79% coverage of the annotated genomic feature by RNAseq alignments
transient receptor potential cation channel subfamily A member 1 homolog
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments
ATP-binding cassette sub-family C member 12-like, transcript variant X8
ATP-binding cassette sub-family C member 12-like, transcript variant X3
ATP-binding cassette sub-family C member 12-like, transcript variant X4
ATP-binding cassette sub-family C member 12-like, transcript variant X5
ATP-binding cassette sub-family C member 12-like, transcript variant X6
ATP-binding cassette sub-family C member 12-like, transcript variant X2
ATP-binding cassette sub-family C member 12-like, transcript variant X1
ATP-binding cassette sub-family C member 12-like, transcript variant X7
ATP-binding cassette sub-family C member 12-like isoform X1
ATP-binding cassette sub-family C member 12-like isoform X2
ATP-binding cassette sub-family C member 12-like isoform X3
nuclear pore complex protein NUP98A-like
meiotic recombination protein SPO11-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 30 Proteins, and 63% coverage of the annotated genomic feature by RNAseq alignments
similar to RNA sequence (same species):INSD:GARH01012189.1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 111 bases not found in genome assembly
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 110 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
RNA polymerase II degradation factor 1-like
uncharacterized LOC123773992, transcript variant X1
uncharacterized LOC123773992, transcript variant X5
uncharacterized LOC123773992, transcript variant X2
uncharacterized LOC123773992, transcript variant X4
uncharacterized LOC123773992, transcript variant X3
uncharacterized LOC123773993, transcript variant X4
uncharacterized LOC123773993, transcript variant X3
uncharacterized LOC123773993, transcript variant X2
uncharacterized LOC123773993, transcript variant X1
pneumococcal serine-rich repeat protein-like
similar to RNA sequence (same species):INSD:GARH01027199.1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 155 bases not found in genome assembly
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 155 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 22 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
protein zyg-11 homolog B-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 28 samples with support for all annotated introns
protein zyg-11 homolog B-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 67 samples with support for all annotated introns
protein zyg-11 homolog B-like, transcript variant X4
protein zyg-11 homolog B-like, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
protein zyg-11 homolog B-like, transcript variant X6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
protein zyg-11 homolog B-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
protein zyg-11 homolog B-like isoform X1
protein zyg-11 homolog B-like isoform X2
protein zyg-11 homolog B-like isoform X3
protein zyg-11 homolog B-like isoform X4
protein zyg-11 homolog B-like isoform X5
transient receptor potential cation channel subfamily A member 1 homolog, transcript variant X7
transient receptor potential cation channel subfamily A member 1 homolog, transcript variant X1
transient receptor potential cation channel subfamily A member 1 homolog, transcript variant X2
transient receptor potential cation channel subfamily A member 1 homolog, transcript variant X3
transient receptor potential cation channel subfamily A member 1 homolog, transcript variant X4
transient receptor potential cation channel subfamily A member 1 homolog, transcript variant X5
transient receptor potential cation channel subfamily A member 1 homolog, transcript variant X8
transient receptor potential cation channel subfamily A member 1 homolog, transcript variant X6
transient receptor potential cation channel subfamily A member 1 homolog isoform X4
transient receptor potential cation channel subfamily A member 1 homolog isoform X2
transient receptor potential cation channel subfamily A member 1 homolog isoform X3
transient receptor potential cation channel subfamily A member 1 homolog isoform X1
transient receptor potential cation channel subfamily A member 1 homolog isoform X5
transient receptor potential cation channel subfamily A member 1 homolog isoform X6
transient receptor potential cation channel subfamily A member 1 homolog isoform X7
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
transmembrane and coiled-coil domain-containing protein 4-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transmembrane and coiled-coil domain-containing protein 4-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 69 samples with support for all annotated introns
transmembrane and coiled-coil domain-containing protein 4-like isoform X1
transmembrane and coiled-coil domain-containing protein 4-like isoform X2
calcium-activated chloride channel regulator 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns
probable serine/threonine-protein kinase samkC
soluble scavenger receptor cysteine-rich domain-containing protein SSC5D-like
neuroparsin-A-like, transcript variant X1
neuroparsin-A-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
protein artichoke-like, transcript variant X2
protein artichoke-like, transcript variant X1
uncharacterized LOC123774008, transcript variant X1
uncharacterized LOC123774008, transcript variant X2
uncharacterized LOC123774008, transcript variant X3
uncharacterized LOC123774009, transcript variant X2
uncharacterized LOC123774009, transcript variant X1
uncharacterized protein LOC123774009 isoform X1
uncharacterized protein LOC123774009 isoform X2
uncharacterized LOC123774009, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 51 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 71% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 90% coverage of the annotated genomic feature by RNAseq alignments
5-formyltetrahydrofolate cyclo-ligase-like
RNA-binding protein lark-like, transcript variant X1
RNA-binding protein lark-like, transcript variant X2
RNA-binding protein lark-like, transcript variant X4
RNA-binding protein lark-like, transcript variant X3
RNA-binding protein lark-like isoform X1
RNA-binding protein lark-like isoform X2
RNA-binding protein lark-like isoform X3
RNA-binding protein lark-like, transcript variant X9
RNA-binding protein lark-like, transcript variant X8
RNA-binding protein lark-like, transcript variant X10
RNA-binding protein lark-like, transcript variant X5
RNA-binding protein lark-like, transcript variant X6
RNA-binding protein lark-like, transcript variant X7
polyadenylate-binding protein 3-like isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 34 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
barrier-to-autointegration factor-like, transcript variant X1
barrier-to-autointegration factor-like, transcript variant X2
bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial-like, transcript variant X2
bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial-like, transcript variant X1
bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial-like isoform X1
bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial-like isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 50 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
uncharacterized protein LOC123774023 isoform X1
uncharacterized protein LOC123774023 isoform X2
uncharacterized protein LOC123774023 isoform X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
serine-threonine kinase receptor-associated protein-like
BMP and activin membrane-bound inhibitor homolog, transcript variant X2
BMP and activin membrane-bound inhibitor homolog, transcript variant X1
BMP and activin membrane-bound inhibitor homolog isoform X2
BMP and activin membrane-bound inhibitor homolog isoform X1
dentin sialophosphoprotein-like, transcript variant X1
dentin sialophosphoprotein-like, transcript variant X2
dentin sialophosphoprotein-like isoform X1
dentin sialophosphoprotein-like isoform X2
UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit-like, transcript variant X1
UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit-like, transcript variant X2
UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit-like, transcript variant X3
UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit-like isoform X1
UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit-like isoform X2
UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit-like isoform X3
uncharacterized LOC123774031, transcript variant X5
uncharacterized LOC123774031, transcript variant X3
uncharacterized LOC123774031, transcript variant X1
uncharacterized protein LOC123774031 isoform X1
uncharacterized protein LOC123774031 isoform X3
uncharacterized LOC123774031, transcript variant X2
uncharacterized protein LOC123774031 isoform X2
uncharacterized LOC123774031, transcript variant X4
uncharacterized protein LOC123774031 isoform X4
uncharacterized protein LOC123774031 isoform X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 51 samples with support for all annotated introns
methylthioribulose-1-phosphate dehydratase-like, transcript variant X1
methylthioribulose-1-phosphate dehydratase-like, transcript variant X2
methylthioribulose-1-phosphate dehydratase-like, transcript variant X3
methylthioribulose-1-phosphate dehydratase-like isoform X1
methylthioribulose-1-phosphate dehydratase-like isoform X3
methylthioribulose-1-phosphate dehydratase-like isoform X2
uncharacterized LOC123774039, transcript variant X2
uncharacterized LOC123774039, transcript variant X1
uncharacterized protein LOC123774039 isoform X1
uncharacterized protein LOC123774039 isoform X2
translation initiation factor IF-2-like, transcript variant X1
translation initiation factor IF-2-like, transcript variant X2
putative golgin subfamily A member 6-like protein 19
uncharacterized LOC123774043, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns
uncharacterized LOC123774043, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
uncharacterized protein LOC123774043 isoform X1
uncharacterized protein LOC123774043 isoform X2
uncharacterized LOC123774042, transcript variant X1
uncharacterized LOC123774042, transcript variant X2
uncharacterized LOC123774042, transcript variant X3
uncharacterized protein LOC123774042 isoform X1
uncharacterized protein LOC123774042 isoform X2
uncharacterized protein LOC123774042 isoform X3
vacuolar protein sorting-associated protein 13B-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
dnaJ homolog subfamily B member 9-like, transcript variant X3
dnaJ homolog subfamily B member 9-like, transcript variant X2
dnaJ homolog subfamily B member 9-like isoform X3
dnaJ homolog subfamily B member 9-like isoform X2
dnaJ homolog subfamily B member 9-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 98 samples with support for all annotated introns
protein N-terminal asparagine amidohydrolase-like isoform X1
uncharacterized LOC123774051, transcript variant X2
uncharacterized LOC123774051, transcript variant X1
uncharacterized protein LOC123774051 isoform X1
uncharacterized LOC123774051, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
uncharacterized protein LOC123774051 isoform X2
uncharacterized LOC123774052, transcript variant X1
uncharacterized LOC123774052, transcript variant X2
uncharacterized protein LOC123774052 isoform X1
uncharacterized protein LOC123774052 isoform X2
cytoplasmic dynein 2 intermediate chain 2-like
glycoprotein 3-alpha-L-fucosyltransferase A-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 80 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase FUT6-like
sperm-associated antigen 1-like, transcript variant X2
sperm-associated antigen 1-like, transcript variant X1
ubiquitin carboxyl-terminal hydrolase 1-like
galactokinase-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 91 samples with support for all annotated introns
galactokinase-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 59 samples with support for all annotated introns
uncharacterized LOC123774066, transcript variant X3
uncharacterized LOC123774066, transcript variant X1
uncharacterized LOC123774066, transcript variant X2
uncharacterized protein LOC123774066 isoform X2
uncharacterized protein LOC123774066 isoform X1
uncharacterized protein LOC123774066 isoform X3
uncharacterized LOC123774067, transcript variant X1
uncharacterized LOC123774067, transcript variant X2
facilitated trehalose transporter Tret1-like, transcript variant X3
facilitated trehalose transporter Tret1-like, transcript variant X2
facilitated trehalose transporter Tret1-like, transcript variant X1
facilitated trehalose transporter Tret1-like
platelet-activating factor acetylhydrolase IB subunit alpha2-like, transcript variant X2
platelet-activating factor acetylhydrolase IB subunit alpha2-like, transcript variant X1
platelet-activating factor acetylhydrolase IB subunit alpha2-like
ubiquinone biosynthesis protein COQ4 homolog 1, mitochondrial-like
PHD finger protein 19-like, transcript variant X1
PHD finger protein 19-like, transcript variant X4
PHD finger protein 19-like, transcript variant X3
PHD finger protein 19-like, transcript variant X2
uncharacterized LOC123774074, transcript variant X2
uncharacterized LOC123774074, transcript variant X1
uncharacterized protein LOC123774074 isoform X2
uncharacterized protein LOC123774074 isoform X1
serine/arginine repetitive matrix protein 1-like