Procambarus clarkii strain Jiangsu linkage group LG62, ASM2042438v2, whole genome shotgun sequence.
Procambarus clarkii (red swamp crayfish)
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Pleocyemata; Astacidea; Astacoidea; Cambaridae; Procambarus.
A chromosome-level reference genome of red swamp crayfish Procambarus clarkii provides insights into the gene families regarding growth or development in crustaceans
REFSEQ INFORMATION: The reference sequence is identical to\nCM035534.1.\nAssembly name: ASM2042438v2\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Freshwater Fisheries Research\nInstitute of Jiangsu Province, Nanjing 210017, China on 2021/10/12.\nThe original whole-genome shotgun project has the accession\nJAIWQB000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Freshwater Fisheries Research Institute\n of Jiangsu Province, Nanjing 210017,\n China\nAssembly Method :: LACHESIS v. may-2020\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: PacBio RS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Procambarus clarkii Annotation\n Release 100\nAnnotation Version :: 100\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 9.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##
Derived by automated computational analysis using gene prediction method: Gnomon.
gelsolin, cytoplasmic-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 106 samples with support for all annotated introns
gelsolin, cytoplasmic-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 103 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
COORDINATES: polyA evidence [ECO:0006239]
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA glutamic acid (anticodon UUC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
ets DNA-binding protein pokkuri-like, transcript variant X2
ets DNA-binding protein pokkuri-like, transcript variant X1
ets DNA-binding protein pokkuri-like isoform X2
ets DNA-binding protein pokkuri-like isoform X1
DNA repair protein REV1-like, transcript variant X7
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
DNA repair protein REV1-like, transcript variant X5
DNA repair protein REV1-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
DNA repair protein REV1-like, transcript variant X6
DNA repair protein REV1-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
DNA repair protein REV1-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
DNA repair protein REV1-like, transcript variant X2
DNA repair protein REV1-like, transcript variant X8
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
coactosin-like protein, transcript variant X2
coactosin-like protein, transcript variant X4
coactosin-like protein, transcript variant X5
coactosin-like protein, transcript variant X6
coactosin-like protein, transcript variant X3
coactosin-like protein, transcript variant X1
protein disulfide-isomerase-like, transcript variant X1
protein disulfide-isomerase-like, transcript variant X3
protein disulfide-isomerase-like, transcript variant X2
protein disulfide-isomerase-like isoform X3
protein disulfide-isomerase-like isoform X2
protein disulfide-isomerase-like isoform X1
WD repeat domain phosphoinositide-interacting protein 3-like
UPF0193 protein EVG1 homolog, transcript variant X1
UPF0193 protein EVG1 homolog, transcript variant X2
kelch-like protein diablo, transcript variant X2
kelch-like protein diablo, transcript variant X1
beta-sarcoglycan-like, transcript variant X2
beta-sarcoglycan-like, transcript variant X1
mannose-6-phosphate isomerase-like, transcript variant X3
mannose-6-phosphate isomerase-like, transcript variant X1
mannose-6-phosphate isomerase-like, transcript variant X2
mannose-6-phosphate isomerase-like isoform X1
mannose-6-phosphate isomerase-like isoform X2
glutaminase kidney isoform, mitochondrial-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
glutaminase kidney isoform, mitochondrial-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
glutaminase kidney isoform, mitochondrial-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
glutaminase liver isoform, mitochondrial-like isoform X1
glutaminase liver isoform, mitochondrial-like isoform X2
glutaminase kidney isoform, mitochondrial-like isoform X3
glutaminase kidney isoform, mitochondrial-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
glutaminase kidney isoform, mitochondrial-like isoform X4
troponin C, isotype gamma-like, transcript variant X1
troponin C, isotype gamma-like, transcript variant X2
troponin C, isotype gamma-like isoform X1
troponin C, isotype gamma-like isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
uncharacterized LOC123770660, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 78 samples with support for all annotated introns
uncharacterized LOC123770660, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 96 samples with support for all annotated introns
protein strawberry notch homolog 1-like, transcript variant X6
protein strawberry notch homolog 1-like, transcript variant X4
protein strawberry notch homolog 1-like, transcript variant X7
protein strawberry notch homolog 1-like, transcript variant X3
protein strawberry notch homolog 1-like, transcript variant X2
protein strawberry notch homolog 1-like, transcript variant X8
protein strawberry notch homolog 1-like, transcript variant X9
protein strawberry notch homolog 1-like, transcript variant X5
protein strawberry notch homolog 1-like, transcript variant X1
protein strawberry notch homolog 1-like isoform X6
protein strawberry notch homolog 1-like isoform X4
protein strawberry notch homolog 1-like isoform X8
protein strawberry notch homolog 1-like isoform X7
protein strawberry notch homolog 1-like isoform X3
protein strawberry notch homolog 1-like isoform X9
protein strawberry notch homolog 1-like isoform X2
protein strawberry notch homolog 1-like isoform X5
protein strawberry notch homolog 1-like isoform X1
serine/arginine-rich splicing factor 1B-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 109 samples with support for all annotated introns
serine/arginine-rich splicing factor 1B-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 109 samples with support for all annotated introns
serine/arginine-rich splicing factor 1B-like isoform X1
serine/arginine-rich splicing factor 1B-like isoform X2
E3 ubiquitin-protein ligase HECW2-like, transcript variant X1
E3 ubiquitin-protein ligase HECW2-like, transcript variant X2
E3 ubiquitin-protein ligase HECW2-like isoform X1
E3 ubiquitin-protein ligase HECW2-like isoform X2
hippocampus abundant transcript 1 protein-like, transcript variant X2
hippocampus abundant transcript 1 protein-like, transcript variant X1
hippocampus abundant transcript 1 protein-like isoform X2
hippocampus abundant transcript 1 protein-like isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
CCR4-NOT transcription complex subunit 1-like, transcript variant X8
CCR4-NOT transcription complex subunit 1-like, transcript variant X2
CCR4-NOT transcription complex subunit 1-like, transcript variant X7
CCR4-NOT transcription complex subunit 1-like, transcript variant X5
CCR4-NOT transcription complex subunit 1-like, transcript variant X4
CCR4-NOT transcription complex subunit 1-like, transcript variant X3
CCR4-NOT transcription complex subunit 1-like, transcript variant X1
CCR4-NOT transcription complex subunit 1-like, transcript variant X6
CCR4-NOT transcription complex subunit 1-like isoform X7
CCR4-NOT transcription complex subunit 1-like isoform X2
CCR4-NOT transcription complex subunit 1-like isoform X6
CCR4-NOT transcription complex subunit 1-like isoform X5
CCR4-NOT transcription complex subunit 1-like isoform X4
CCR4-NOT transcription complex subunit 1-like isoform X3
CCR4-NOT transcription complex subunit 1-like isoform X1
POU domain, class 4, transcription factor 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
uncharacterized transmembrane protein DDB_G0289901-like isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
glycine, alanine and asparagine-rich protein-like isoform X2
glycine, alanine and asparagine-rich protein-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 78% coverage of the annotated genomic feature by RNAseq alignments
putative uncharacterized protein AFDN-DT
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 43 samples with support for all annotated introns
E3 ubiquitin-protein ligase RNF12-B-like
uncharacterized transmembrane protein DDB_G0289901-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
phosphatidylserine synthase 2-like, transcript variant X3
phosphatidylserine synthase 2-like, transcript variant X1
phosphatidylserine synthase 2-like, transcript variant X2
phosphatidylserine synthase 2-like isoform X1
phosphatidylserine synthase 2-like isoform X3
phosphatidylserine synthase 2-like isoform X2
peptidyl-prolyl cis-trans isomerase sig-7-like
protein shuttle craft-like, transcript variant X2
protein shuttle craft-like, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 37 samples with support for all annotated introns
protein shuttle craft-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
protein shuttle craft-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
protein shuttle craft-like, transcript variant X1
vesicular integral-membrane protein VIP36-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
protein kibra-like, transcript variant X1
protein kibra-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
coagulation factor X-like, transcript variant X2
coagulation factor X-like, transcript variant X5
coagulation factor X-like, transcript variant X1
coagulation factor X-like, transcript variant X3
coagulation factor X-like, transcript variant X4
ubiquitin-conjugating enzyme E2 E1-like, transcript variant X2
ubiquitin-conjugating enzyme E2 E1-like, transcript variant X1
ubiquitin-conjugating enzyme E2 E1-like, transcript variant X4
ubiquitin-conjugating enzyme E2 E1-like, transcript variant X3
ubiquitin-conjugating enzyme E2 E1-like isoform X1
ubiquitin-conjugating enzyme E2 E1-like isoform X2
putative sodium-coupled neutral amino acid transporter 11
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
sphingomyelin synthase-related protein 1-like, transcript variant X1
sphingomyelin synthase-related protein 1-like, transcript variant X6
sphingomyelin synthase-related protein 1-like, transcript variant X2
sphingomyelin synthase-related protein 1-like, transcript variant X9
sphingomyelin synthase-related protein 1-like, transcript variant X3
sphingomyelin synthase-related protein 1-like, transcript variant X7
sphingomyelin synthase-related protein 1-like, transcript variant X4
sphingomyelin synthase-related protein 1-like, transcript variant X5
sphingomyelin synthase-related protein 1-like, transcript variant X8
sphingomyelin synthase-related protein 1-like isoform X1
sphingomyelin synthase-related protein 1-like isoform X2
sphingomyelin synthase-related protein 1-like isoform X3
sphingomyelin synthase-related protein 1-like isoform X4
sphingomyelin synthase-related protein 1-like isoform X5
X-linked retinitis pigmentosa GTPase regulator-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
X-linked retinitis pigmentosa GTPase regulator-like, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
X-linked retinitis pigmentosa GTPase regulator-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
X-linked retinitis pigmentosa GTPase regulator-like, transcript variant X4
X-linked retinitis pigmentosa GTPase regulator-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
X-linked retinitis pigmentosa GTPase regulator-like isoform X3
X-linked retinitis pigmentosa GTPase regulator-like isoform X2
X-linked retinitis pigmentosa GTPase regulator-like isoform X1
X-linked retinitis pigmentosa GTPase regulator-like isoform X4
X-linked retinitis pigmentosa GTPase regulator-like isoform X5
pulmonary surfactant-associated protein D-like
transfer RNA tryptophan (anticodon CCA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
macrophage mannose receptor 1-like, transcript variant X1
macrophage mannose receptor 1-like, transcript variant X2
macrophage mannose receptor 1-like isoform X1
macrophage mannose receptor 1-like isoform X2
dnaJ homolog subfamily C member 10-like, transcript variant X1
dnaJ homolog subfamily C member 10-like, transcript variant X2
dnaJ homolog subfamily C member 10-like isoform X1
dnaJ homolog subfamily C member 10-like isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 88% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcription factor A, mitochondrial-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 80 samples with support for all annotated introns
collagen alpha-1(VII) chain-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
collagen alpha-1(VII) chain-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
collagen alpha-1(VII) chain-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 51 samples with support for all annotated introns
collagen alpha-1(VII) chain-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 29 samples with support for all annotated introns
receptor-type tyrosine-protein phosphatase delta-like, transcript variant X3
receptor-type tyrosine-protein phosphatase delta-like, transcript variant X1
receptor-type tyrosine-protein phosphatase delta-like, transcript variant X2
receptor-type tyrosine-protein phosphatase delta-like isoform X2
receptor-type tyrosine-protein phosphatase delta-like isoform X1
receptor-type tyrosine-protein phosphatase delta-like isoform X3
phosphatidylinositol phosphatase PTPRQ-like
receptor-type tyrosine-protein phosphatase F-like, transcript variant X1
receptor-type tyrosine-protein phosphatase F-like, transcript variant X2
receptor-type tyrosine-protein phosphatase F-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
receptor-type tyrosine-protein phosphatase F-like isoform X1
receptor-type tyrosine-protein phosphatase F-like isoform X2
receptor-type tyrosine-protein phosphatase H-like isoform X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
uncharacterized LOC123770709, transcript variant X2
uncharacterized LOC123770709, transcript variant X1
transient receptor potential channel pyrexia-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transient receptor potential channel pyrexia-like, transcript variant X2
transient receptor potential channel pyrexia-like, transcript variant X1
transient receptor potential channel pyrexia-like, transcript variant X3
transient receptor potential channel pyrexia-like isoform X1
transient receptor potential channel pyrexia-like isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 59 samples with support for all annotated introns
uncharacterized LOC123770713, transcript variant X2
uncharacterized LOC123770713, transcript variant X3
uncharacterized LOC123770713, transcript variant X4
uncharacterized LOC123770713, transcript variant X1
uncharacterized protein LOC123770713 isoform X1
uncharacterized protein LOC123770713 isoform X2
mitochondrial import inner membrane translocase subunit Tim17-B-like
sodium/potassium-transporting ATPase subunit beta-1-interacting protein-like
ribosome-binding protein 1-like, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments
ribosome-binding protein 1-like isoform X3
ribosome-binding protein 1-like, transcript variant X2
ribosome-binding protein 1-like, transcript variant X3
ribosome-binding protein 1-like, transcript variant X4
ribosome-binding protein 1-like, transcript variant X1
ribosome-binding protein 1-like isoform X2
ribosome-binding protein 1-like isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like, transcript variant X2
serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like, transcript variant X1
serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like isoform X1
serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like isoform X2
high mobility group nucleosome-binding domain-containing protein 5-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 90% coverage of the annotated genomic feature by RNAseq alignments
origin recognition complex subunit 5-like, transcript variant X4
origin recognition complex subunit 5-like, transcript variant X2
origin recognition complex subunit 5-like, transcript variant X3
origin recognition complex subunit 5-like, transcript variant X1
origin recognition complex subunit 5-like isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
uncharacterized LOC123770725, transcript variant X2
uncharacterized LOC123770725, transcript variant X3
uncharacterized LOC123770725, transcript variant X1
surfeit locus protein 4 homolog, transcript variant X1
surfeit locus protein 4 homolog isoform X1
surfeit locus protein 4 homolog, transcript variant X2
surfeit locus protein 4 homolog isoform X2
tRNA (guanine(37)-N1)-methyltransferase-like, transcript variant X2
tRNA (guanine(37)-N1)-methyltransferase-like, transcript variant X3
tRNA (guanine(37)-N1)-methyltransferase-like, transcript variant X1
tRNA (guanine(37)-N1)-methyltransferase-like, transcript variant X4
tRNA (guanine(37)-N1)-methyltransferase-like isoform X1
tRNA (guanine(37)-N1)-methyltransferase-like isoform X2
coiled-coil domain-containing protein 32-like, transcript variant X2
coiled-coil domain-containing protein 32-like, transcript variant X1
coiled-coil domain-containing protein 32-like
repressor of RNA polymerase III transcription MAF1 homolog, transcript variant X1
repressor of RNA polymerase III transcription MAF1 homolog, transcript variant X2
repressor of RNA polymerase III transcription MAF1 homolog isoform X1
repressor of RNA polymerase III transcription MAF1 homolog isoform X2
uncharacterized LOC123770730, transcript variant X1
uncharacterized LOC123770730, transcript variant X2
protein TRACHEARY ELEMENT DIFFERENTIATION-RELATED 7A-like
protein MON2 homolog, transcript variant X1
protein MON2 homolog, transcript variant X3
protein MON2 homolog, transcript variant X4
protein MON2 homolog, transcript variant X5
protein MON2 homolog, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
uncharacterized LOC123770737, transcript variant X1
uncharacterized LOC123770737, transcript variant X2
uncharacterized protein LOC123770737 isoform X1
uncharacterized protein LOC123770737 isoform X2
facilitated trehalose transporter Tret1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 6% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 48% coverage of the annotated genomic feature by RNAseq alignments
deformed epidermal autoregulatory factor 1 homolog
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 43 samples with support for all annotated introns
protein tweety-like, transcript variant X2
protein tweety-like, transcript variant X9
protein tweety-like, transcript variant X11
protein tweety-like, transcript variant X10
protein tweety-like, transcript variant X12
protein tweety-like, transcript variant X13
protein tweety-like, transcript variant X1
protein tweety-like, transcript variant X6
protein tweety-like, transcript variant X5
protein tweety-like, transcript variant X8
protein tweety-like, transcript variant X7
protein tweety-like, transcript variant X3
protein tweety-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
guanine nucleotide-binding protein subunit alpha homolog, transcript variant X2
guanine nucleotide-binding protein subunit alpha homolog, transcript variant X1
guanine nucleotide-binding protein subunit alpha homolog isoform X1
guanine nucleotide-binding protein subunit alpha homolog isoform X2
adenosine 3'-phospho 5'-phosphosulfate transporter 2-like, transcript variant X2
adenosine 3'-phospho 5'-phosphosulfate transporter 2-like, transcript variant X3
adenosine 3'-phospho 5'-phosphosulfate transporter 2-like, transcript variant X4
adenosine 3'-phospho 5'-phosphosulfate transporter 2-like, transcript variant X1
adenosine 3'-phospho 5'-phosphosulfate transporter 2-like
facilitated trehalose transporter Tret1-2 homolog
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins, and 87% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
transfer RNA leucine (anticodon UAG); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
uncharacterized LOC123770744, transcript variant X2
uncharacterized LOC123770744, transcript variant X1
uncharacterized LOC123770744, transcript variant X3
WAS/WASL-interacting protein family member 1-like
keratin, type I cytoskeletal 15-like, transcript variant X3
keratin, type I cytoskeletal 15-like, transcript variant X2
keratin, type I cytoskeletal 15-like isoform X2
uncharacterized protein LOC123770751 isoform X3
keratin, type I cytoskeletal 15-like, transcript variant X1
keratin, type I cytoskeletal 15-like isoform X1
cold and drought-regulated protein CORA-like
keratin, type II cytoskeletal 1-like, transcript variant X2
keratin, type II cytoskeletal 1-like, transcript variant X1
keratin, type II cytoskeletal 1-like isoform X1
keratin, type II cytoskeletal 1-like isoform X2
H/ACA ribonucleoprotein complex subunit GAR1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
uncharacterized LOC123770778, transcript variant X3
uncharacterized LOC123770778, transcript variant X1
uncharacterized LOC123770778, transcript variant X2
uncharacterized protein LOC123770778 isoform X1
uncharacterized protein LOC123770778 isoform X2
uncharacterized protein LOC123770778 isoform X3
serine/threonine-protein phosphatase 2B catalytic subunit 2-like, transcript variant X5
serine/threonine-protein phosphatase 2B catalytic subunit 2-like, transcript variant X4
serine/threonine-protein phosphatase 2B catalytic subunit 2-like, transcript variant X2
serine/threonine-protein phosphatase 2B catalytic subunit 2-like, transcript variant X1
serine/threonine-protein phosphatase 2B catalytic subunit 2-like, transcript variant X3
serine/threonine-protein phosphatase 2B catalytic subunit 2-like isoform X5
serine/threonine-protein phosphatase 2B catalytic subunit 2-like isoform X4
serine/threonine-protein phosphatase 2B catalytic subunit 2-like isoform X3
serine/threonine-protein phosphatase 2B catalytic subunit 2-like isoform X2
serine/threonine-protein phosphatase 2B catalytic subunit 2-like isoform X1
metallophosphoesterase 1 homolog, transcript variant X1
metallophosphoesterase 1 homolog, transcript variant X4
metallophosphoesterase 1 homolog, transcript variant X2
metallophosphoesterase 1 homolog, transcript variant X3
metallophosphoesterase 1 homolog isoform X4
metallophosphoesterase 1 homolog isoform X1
metallophosphoesterase 1 homolog isoform X3
metallophosphoesterase 1 homolog isoform X2
tudor and KH domain-containing protein homolog, transcript variant X2
tudor and KH domain-containing protein homolog, transcript variant X1
tudor and KH domain-containing protein homolog isoform X2
tudor and KH domain-containing protein homolog isoform X1
uncharacterized LOC123770937, transcript variant X2
uncharacterized LOC123770937, transcript variant X1
uncharacterized LOC123770938, transcript variant X1
uncharacterized LOC123770938, transcript variant X2
uncharacterized protein LOC123770938 isoform X1
uncharacterized protein LOC123770938 isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns
postacrosomal sheath WW domain-binding protein-like
pheromone receptor transcription factor-like
rab3 GTPase-activating protein non-catalytic subunit-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: rab3 GTPase-activating protein non-catalytic subunit-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
centrosomal protein of 19 kDa-like, transcript variant X2
centrosomal protein of 19 kDa-like, transcript variant X1
glycine-rich cell wall structural protein 1.8-like
uncharacterized LOC123770943, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
uncharacterized LOC123770943, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 72% coverage of the annotated genomic feature by RNAseq alignments
low-density lipoprotein receptor-related protein 1-like, transcript variant X4
low-density lipoprotein receptor-related protein 1-like, transcript variant X3
low-density lipoprotein receptor-related protein 1-like, transcript variant X2
low-density lipoprotein receptor-related protein 1-like, transcript variant X1
low-density lipoprotein receptor-related protein 1-like isoform X4
low-density lipoprotein receptor-related protein 1-like isoform X3
low-density lipoprotein receptor-related protein 1-like isoform X2
low-density lipoprotein receptor-related protein 1-like isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 90% coverage of the annotated genomic feature by RNAseq alignments
putative mediator of RNA polymerase II transcription subunit 26
similar to RNA sequence (same species):INSD:GARH01034892.1
annotated by transcript or proteomic data
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 185 bases not found in genome assembly
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 185 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC123770813, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
uncharacterized LOC123770813, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
uncharacterized protein LOC123770813 isoform X1
uncharacterized protein LOC123770813 isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments
crustacyanin-A2 subunit, transcript variant X1
crustacyanin-A2 subunit, transcript variant X3
crustacyanin-A2 subunit, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 38 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 45 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 43 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
serine/threonine-protein kinase rio2-like
organellar oligopeptidase A, chloroplastic/mitochondrial-like, transcript variant X1
probable cytosolic oligopeptidase A isoform X1
organellar oligopeptidase A, chloroplastic/mitochondrial-like, transcript variant X2
organellar oligopeptidase A, chloroplastic/mitochondrial-like isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 92% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
dynein-1-alpha heavy chain, flagellar inner arm I1 complex-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 96% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized LOC123770828, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
uncharacterized LOC123770828, transcript variant X1
uncharacterized protein LOC123770828 isoform X2
uncharacterized protein LOC123770828 isoform X1
protocadherin-like wing polarity protein stan
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 89% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 65% coverage of the annotated genomic feature by RNAseq alignments
G protein-coupled receptor kinase 2-like, transcript variant X2
G protein-coupled receptor kinase 2-like, transcript variant X1
G protein-coupled receptor kinase 2-like isoform X2
G protein-coupled receptor kinase 2-like isoform X1
G protein-coupled receptor kinase 2-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 35 samples with support for all annotated introns
G protein-coupled receptor kinase 2-like isoform X3
DNA-directed RNA polymerase II subunit RPB1-like
uncharacterized LOC123770833, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
uncharacterized LOC123770833, transcript variant X1
protocadherin-like wing polarity protein stan, transcript variant X2
protocadherin-like wing polarity protein stan, transcript variant X3
protocadherin-like wing polarity protein stan, transcript variant X1
protocadherin-like wing polarity protein stan isoform X3
protocadherin-like wing polarity protein stan isoform X2
protocadherin-like wing polarity protein stan isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 95% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 74% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized LOC123770834, transcript variant X1
uncharacterized LOC123770834, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 46 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 68% coverage of the annotated genomic feature by RNAseq alignments
arginine and glutamate-rich protein 1-like
transfer RNA valine (anticodon UAC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
proline-rich receptor-like protein kinase PERK10
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:12.0:RF00001
transient receptor potential cation channel subfamily M member 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transient receptor potential cation channel subfamily M member-like 2
EARP-interacting protein homolog, transcript variant X2
EARP-interacting protein homolog, transcript variant X1
EARP and GARP complex-interacting protein 1-like isoform X1
EARP-interacting protein homolog isoform X2
similar to RNA sequence (same species):INSD:GBEV01069779.1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 172 bases not found in genome assembly
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 172 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 65% coverage of the annotated genomic feature by RNAseq alignments
baculoviral IAP repeat-containing protein 8-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 81% coverage of the annotated genomic feature by RNAseq alignments
nuclear pore complex-interacting protein family member B13-like