Procambarus clarkii strain Jiangsu linkage group LG60, ASM2042438v2, whole genome shotgun sequence.
Procambarus clarkii (red swamp crayfish)
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Pleocyemata; Astacidea; Astacoidea; Cambaridae; Procambarus.
A chromosome-level reference genome of red swamp crayfish Procambarus clarkii provides insights into the gene families regarding growth or development in crustaceans
REFSEQ INFORMATION: The reference sequence is identical to\nCM035532.1.\nAssembly name: ASM2042438v2\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Freshwater Fisheries Research\nInstitute of Jiangsu Province, Nanjing 210017, China on 2021/10/12.\nThe original whole-genome shotgun project has the accession\nJAIWQB000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Freshwater Fisheries Research Institute\n of Jiangsu Province, Nanjing 210017,\n China\nAssembly Method :: LACHESIS v. may-2020\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: PacBio RS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Procambarus clarkii Annotation\n Release 100\nAnnotation Version :: 100\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 9.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##
Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 88% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 72 samples with support for all annotated introns
cytochrome P450 2L1-like, transcript variant X1
COORDINATES: polyA evidence [ECO:0006239]
cytochrome P450 2L1-like, transcript variant X2
similar to RNA sequence (same species):INSD:GBEV01071432.1
annotated by transcript or proteomic data
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 191 bases not found in genome assembly
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 191 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
similar to RNA sequence (same species):INSD:GBEV01174996.1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 284 bases not found in genome assembly
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 284 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
probable UDP-sugar transporter protein SLC35A4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 41 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
uncharacterized PPE family protein PPE54-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
uncharacterized PE-PGRS family protein PE_PGRS54-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:12.0:RF00001
uncharacterized LOC123770247, transcript variant X1
uncharacterized LOC123770247, transcript variant X2
uncharacterized protein LOC123770247 isoform X1
uncharacterized protein LOC123770247 isoform X2
uncharacterized LOC123770248, transcript variant X1
uncharacterized LOC123770248, transcript variant X2
uncharacterized protein LOC123770248 isoform X1
uncharacterized protein LOC123770248 isoform X2
uncharacterized LOC123770249, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 56 samples with support for all annotated introns
uncharacterized protein LOC123770249 isoform X1
uncharacterized LOC123770249, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 35 samples with support for all annotated introns
uncharacterized protein LOC123770249 isoform X2
kelch-like protein 18, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 71 samples with support for all annotated introns
kelch-like protein 18, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 75 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 76% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized LOC123770411, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
uncharacterized LOC123770411, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
uncharacterized protein LOC123770411 isoform X1
uncharacterized protein LOC123770411 isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 89% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 85 samples with support for all annotated introns
pollen-specific leucine-rich repeat extensin-like protein 2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 33 samples with support for all annotated introns
COORDINATES: nucleotide motif:Rfam:12.0:RF00004
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
similar to RNA sequence (same species):INSD:GBEV01057487.1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 379 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 280 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
cell wall integrity and stress response component 4-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
uncharacterized LOC123770256, transcript variant X3
uncharacterized LOC123770256, transcript variant X4
uncharacterized LOC123770256, transcript variant X1
uncharacterized LOC123770256, transcript variant X2
uncharacterized protein LOC123770256 isoform X1
uncharacterized protein LOC123770256 isoform X2
store-operated calcium entry regulator STIMATE-like
iron-sulfur protein NUBPL-like, transcript variant X4
iron-sulfur protein NUBPL-like, transcript variant X1
iron-sulfur protein NUBPL-like, transcript variant X5
iron-sulfur protein NUBPL-like, transcript variant X3
iron-sulfur protein NUBPL-like isoform X1
iron-sulfur protein NUBPL-like isoform X3
iron-sulfur protein NUBPL-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 35 samples with support for all annotated introns
iron-sulfur protein NUBPL-like isoform X2
39S ribosomal protein L55, mitochondrial-like
RING finger protein 44-like, transcript variant X5
RING finger protein 44-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
RING finger protein 44-like, transcript variant X3
RING finger protein 44-like, transcript variant X2
RING finger protein 44-like, transcript variant X8
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
RING finger protein 44-like, transcript variant X7
RING finger protein 44-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 53 samples with support for all annotated introns
RING finger protein 44-like, transcript variant X6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 90% coverage of the annotated genomic feature by RNAseq alignments, including 60 samples with support for all annotated introns
ethanolamine kinase 1-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
ethanolamine kinase 1-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns
ethanolamine kinase 1-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 55 samples with support for all annotated introns
uncharacterized LOC123770265, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 74 samples with support for all annotated introns
uncharacterized LOC123770265, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 32 samples with support for all annotated introns
uncharacterized LOC123770265, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
follistatin-related protein 5-like, transcript variant X4
follistatin-related protein 5-like, transcript variant X2
follistatin-related protein 5-like, transcript variant X3
follistatin-related protein 5-like, transcript variant X1
follistatin-related protein 5-like isoform X4
follistatin-related protein 5-like isoform X2
follistatin-related protein 5-like isoform X3
follistatin-related protein 5-like isoform X1
ankyrin repeat family A protein 2-like, transcript variant X2
ankyrin repeat family A protein 2-like, transcript variant X3
ankyrin repeat family A protein 2-like, transcript variant X1
ankyrin repeat family A protein 2-like isoform X1
ankyrin repeat family A protein 2-like isoform X2
uncharacterized threonine-rich GPI-anchored glycoprotein PJ4664.02-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 30 samples with support for all annotated introns
uncharacterized threonine-rich GPI-anchored glycoprotein PJ4664.02-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 52 samples with support for all annotated introns
uncharacterized threonine-rich GPI-anchored glycoprotein PJ4664.02-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 59 samples with support for all annotated introns
uncharacterized threonine-rich GPI-anchored glycoprotein PJ4664.02-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 55 samples with support for all annotated introns
uncharacterized threonine-rich GPI-anchored glycoprotein PJ4664.02-like isoform X3
uncharacterized protein LOC123770270 isoform X2
uncharacterized protein LOC123770270 isoform X1
uncharacterized protein LOC123770270 isoform X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 88% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized LOC123770273, transcript variant X2
uncharacterized LOC123770273, transcript variant X1
tetraspanin-9-like, transcript variant X2
tetraspanin-9-like, transcript variant X1
lactosylceramide 4-alpha-galactosyltransferase-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 79% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 97% coverage of the annotated genomic feature by RNAseq alignments
mitogen-activated protein kinase kinase kinase 13-like, transcript variant X1
mitogen-activated protein kinase kinase kinase 13-like, transcript variant X2
mitogen-activated protein kinase kinase kinase 13-like, transcript variant X3
mitogen-activated protein kinase kinase kinase 13-like, transcript variant X4
mitogen-activated protein kinase kinase kinase 13-like, transcript variant X5
mitogen-activated protein kinase kinase kinase 13-like isoform X2
mitogen-activated protein kinase kinase kinase 13-like isoform X1
mitogen-activated protein kinase kinase kinase 13-like isoform X4
mitogen-activated protein kinase kinase kinase 13-like isoform X3
mitogen-activated protein kinase kinase kinase 13-like isoform X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
uncharacterized LOC123770280, transcript variant X2
uncharacterized LOC123770280, transcript variant X1
uncharacterized protein LOC123770280 isoform X1
uncharacterized protein LOC123770280 isoform X2
ribosomal oxygenase 1-like, transcript variant X1
ribosomal oxygenase 1-like, transcript variant X2
DNA topoisomerase 2-binding protein 1-like, transcript variant X3
DNA topoisomerase 2-binding protein 1-like, transcript variant X4
DNA topoisomerase 2-binding protein 1-like, transcript variant X5
DNA topoisomerase 2-binding protein 1-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
DNA topoisomerase 2-binding protein 1-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
DNA topoisomerase 2-binding protein 1-like isoform X5
DNA topoisomerase 2-binding protein 1-like isoform X3
DNA topoisomerase 2-binding protein 1-like isoform X4
DNA topoisomerase 2-binding protein 1-like isoform X1
DNA topoisomerase 2-binding protein 1-like isoform X2
rho-related GTP-binding protein RhoU-like
adipocyte plasma membrane-associated protein-like
splicing factor U2AF 26 kDa subunit-like, transcript variant X1
splicing factor U2AF 26 kDa subunit-like
splicing factor U2AF 26 kDa subunit-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 84 samples with support for all annotated introns
protein prune homolog 2-like, transcript variant X6
protein prune homolog 2-like, transcript variant X4
protein prune homolog 2-like, transcript variant X5
protein prune homolog 2-like, transcript variant X1
protein prune homolog 2-like, transcript variant X2
protein prune homolog 2-like, transcript variant X3
uncharacterized LOC123770293, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 80 samples with support for all annotated introns
uncharacterized LOC123770293, transcript variant X1
voltage-gated hydrogen channel 1-like, transcript variant X2
voltage-gated hydrogen channel 1-like, transcript variant X1
voltage-gated hydrogen channel 1-like isoform X1
voltage-gated hydrogen channel 1-like isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
sarcoplasmic reticulum histidine-rich calcium-binding protein-like
calcium-activated chloride channel regulator 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
BRO1 domain-containing protein BROX-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 104 samples with support for all annotated introns
BRO1 domain-containing protein BROX-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 32 samples with support for all annotated introns
BRO1 domain-containing protein BROX-like
fidgetin-like protein 1, transcript variant X2
fidgetin-like protein 1, transcript variant X3
fidgetin-like protein 1, transcript variant X1
fidgetin-like protein 1, transcript variant X4
fidgetin-like protein 1, transcript variant X5
uncharacterized LOC123770415, transcript variant X1
uncharacterized LOC123770415, transcript variant X2
uncharacterized protein LOC123770415 isoform X1
uncharacterized protein LOC123770415 isoform X2
kinesin-like protein unc-104, transcript variant X3
kinesin-like protein unc-104, transcript variant X1
kinesin-like protein unc-104, transcript variant X2
Golgi SNAP receptor complex member 2-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 32 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 30 samples with support for all annotated introns
Golgi SNAP receptor complex member 2-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 32 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 64 samples with support for all annotated introns
Golgi SNAP receptor complex member 2-like
uncharacterized LOC123770301, transcript variant X5
uncharacterized LOC123770301, transcript variant X3
uncharacterized LOC123770301, transcript variant X2
uncharacterized LOC123770301, transcript variant X4
uncharacterized LOC123770301, transcript variant X6
uncharacterized LOC123770301, transcript variant X1
uncharacterized protein LOC123770301 isoform X2
uncharacterized protein LOC123770301 isoform X1
enhancer of polycomb homolog 1-like, transcript variant X2
enhancer of polycomb homolog 1-like, transcript variant X1
enhancer of polycomb homolog 1-like isoform X2
enhancer of polycomb homolog 1-like isoform X1
uncharacterized LOC123770304, transcript variant X2
uncharacterized LOC123770304, transcript variant X1
uncharacterized LOC123770304, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
mucosa-associated lymphoid tissue lymphoma translocation protein 1-like, transcript variant X3
mucosa-associated lymphoid tissue lymphoma translocation protein 1-like, transcript variant X1
mucosa-associated lymphoid tissue lymphoma translocation protein 1-like, transcript variant X2
mucosa-associated lymphoid tissue lymphoma translocation protein 1-like, transcript variant X4
mucosa-associated lymphoid tissue lymphoma translocation protein 1-like isoform X2
mucosa-associated lymphoid tissue lymphoma translocation protein 1-like isoform X1
mucosa-associated lymphoid tissue lymphoma translocation protein 1-like isoform X3
endonuclease/exonuclease/phosphatase family domain-containing protein 1-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 59 samples with support for all annotated introns
endonuclease/exonuclease/phosphatase family domain-containing protein 1-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 88 samples with support for all annotated introns
endonuclease/exonuclease/phosphatase family domain-containing protein 1-like
pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1-like, transcript variant X3
pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1-like, transcript variant X4
pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1-like, transcript variant X1
pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1-like, transcript variant X2
pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1-like, transcript variant X5
pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1-like
dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like, transcript variant X3
dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like, transcript variant X1
dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like, transcript variant X2
dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like isoform X3
dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like isoform X1
dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like isoform X2
vang-like protein 2, transcript variant X2
vang-like protein 2, transcript variant X1
pollen-specific leucine-rich repeat extensin-like protein 3
golgin subfamily A member 6-like protein 2
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like
bifunctional coenzyme A synthase-like, transcript variant X2
bifunctional coenzyme A synthase-like, transcript variant X1
bifunctional coenzyme A synthase-like, transcript variant X3
bifunctional coenzyme A synthase-like isoform X1
bifunctional coenzyme A synthase-like isoform X2
furin-like protease 1, transcript variant X1
furin-like protease 1, transcript variant X2
furin-like protease 1, transcript variant X3
furin-like protease 1, isoforms 1/1-X/2 isoform X1
furin-like protease 1, isoforms 1/1-X/2 isoform X2
WD repeat domain phosphoinositide-interacting protein 4-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 46 samples with support for all annotated introns
WD repeat domain phosphoinositide-interacting protein 4-like, transcript variant X1
WD repeat domain phosphoinositide-interacting protein 4-like, transcript variant X3
WD repeat domain phosphoinositide-interacting protein 4-like isoform X1
WD repeat domain phosphoinositide-interacting protein 4-like isoform X2
alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
D-2-hydroxyglutarate dehydrogenase, mitochondrial-like, transcript variant X2
D-2-hydroxyglutarate dehydrogenase, mitochondrial-like, transcript variant X4
D-2-hydroxyglutarate dehydrogenase, mitochondrial-like, transcript variant X1
D-2-hydroxyglutarate dehydrogenase, mitochondrial-like, transcript variant X3
D-2-hydroxyglutarate dehydrogenase, mitochondrial-like, transcript variant X7
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 54 samples with support for all annotated introns
D-2-hydroxyglutarate dehydrogenase, mitochondrial-like, transcript variant X6
D-2-hydroxyglutarate dehydrogenase, mitochondrial-like, transcript variant X8
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 43 samples with support for all annotated introns
D-2-hydroxyglutarate dehydrogenase, mitochondrial-like, transcript variant X5
D-2-hydroxyglutarate dehydrogenase, mitochondrial-like isoform X1
D-2-hydroxyglutarate dehydrogenase, mitochondrial-like isoform X2
D-2-hydroxyglutarate dehydrogenase, mitochondrial-like isoform X3
D-2-hydroxyglutarate dehydrogenase, mitochondrial-like isoform X4
vegetative cell wall protein gp1-like, transcript variant X2
vegetative cell wall protein gp1-like, transcript variant X1
vegetative cell wall protein gp1-like isoform X2
vegetative cell wall protein gp1-like isoform X1
WD repeat-containing protein 44-like, transcript variant X4
WD repeat-containing protein 44-like, transcript variant X2
WD repeat-containing protein 44-like, transcript variant X3
WD repeat-containing protein 44-like, transcript variant X1
WD repeat-containing protein 44-like, transcript variant X5
WD repeat-containing protein 44-like isoform X2
WD repeat-containing protein 44-like isoform X3
WD repeat-containing protein 44-like isoform X4
WD repeat-containing protein 44-like isoform X1
WD repeat-containing protein 44-like isoform X5
serine/threonine-protein kinase PAK 2-like, transcript variant X2
serine/threonine-protein kinase PAK 2-like isoform X2
serine/threonine-protein kinase PAK 2-like, transcript variant X1
serine/threonine-protein kinase PAK 2-like isoform X1
U3 small nucleolar RNA-interacting protein 2-like
E3 ubiquitin-protein ligase lubel-like, transcript variant X6
E3 ubiquitin-protein ligase lubel-like isoform X6
E3 ubiquitin-protein ligase lubel-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
E3 ubiquitin-protein ligase lubel-like, transcript variant X1
E3 ubiquitin-protein ligase lubel-like, transcript variant X3
E3 ubiquitin-protein ligase lubel-like, transcript variant X15
E3 ubiquitin-protein ligase lubel-like, transcript variant X18
E3 ubiquitin-protein ligase lubel-like, transcript variant X20
E3 ubiquitin-protein ligase lubel-like, transcript variant X5
E3 ubiquitin-protein ligase lubel-like, transcript variant X8
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
E3 ubiquitin-protein ligase lubel-like, transcript variant X11
E3 ubiquitin-protein ligase lubel-like, transcript variant X17
E3 ubiquitin-protein ligase lubel-like, transcript variant X12
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
E3 ubiquitin-protein ligase lubel-like, transcript variant X16
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
E3 ubiquitin-protein ligase lubel-like, transcript variant X19
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
E3 ubiquitin-protein ligase lubel-like, transcript variant X7
E3 ubiquitin-protein ligase lubel-like, transcript variant X9
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
E3 ubiquitin-protein ligase lubel-like, transcript variant X10
E3 ubiquitin-protein ligase lubel-like, transcript variant X13
E3 ubiquitin-protein ligase lubel-like, transcript variant X4
E3 ubiquitin-protein ligase lubel-like isoform X1
E3 ubiquitin-protein ligase lubel-like isoform X2
E3 ubiquitin-protein ligase lubel-like isoform X3
E3 ubiquitin-protein ligase lubel-like isoform X15
E3 ubiquitin-protein ligase lubel-like isoform X18
E3 ubiquitin-protein ligase lubel-like isoform X20
E3 ubiquitin-protein ligase lubel-like isoform X5
E3 ubiquitin-protein ligase lubel-like isoform X8
E3 ubiquitin-protein ligase lubel-like isoform X11
E3 ubiquitin-protein ligase lubel-like isoform X17
E3 ubiquitin-protein ligase lubel-like isoform X12
E3 ubiquitin-protein ligase lubel-like isoform X16
E3 ubiquitin-protein ligase lubel-like isoform X19
E3 ubiquitin-protein ligase lubel-like isoform X7
E3 ubiquitin-protein ligase lubel-like isoform X9
E3 ubiquitin-protein ligase lubel-like isoform X10
E3 ubiquitin-protein ligase lubel-like isoform X13
E3 ubiquitin-protein ligase lubel-like isoform X4
E3 ubiquitin-protein ligase lubel-like, transcript variant X21
E3 ubiquitin-protein ligase lubel-like, transcript variant X14
E3 ubiquitin-protein ligase lubel-like isoform X14
E3 ubiquitin-protein ligase lubel-like isoform X21
transcriptional regulatory protein AlgP-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized LOC123770330, transcript variant X8
uncharacterized LOC123770330, transcript variant X4
uncharacterized LOC123770330, transcript variant X6
uncharacterized LOC123770330, transcript variant X3
uncharacterized LOC123770330, transcript variant X5
uncharacterized LOC123770330, transcript variant X7
uncharacterized LOC123770330, transcript variant X1
uncharacterized LOC123770330, transcript variant X2
uncharacterized LOC123770330, transcript variant X9
uncharacterized protein LOC123770330 isoform X2
uncharacterized protein LOC123770330 isoform X1
uncharacterized protein LOC123770330 isoform X3
uncharacterized protein LOC123770330 isoform X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 110 samples with support for all annotated introns
glutenin, high molecular weight subunit PW212-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 60 Proteins
actin-related protein 8-like, transcript variant X2
actin-related protein 8-like, transcript variant X1
uncharacterized LOC123770334, transcript variant X1
uncharacterized LOC123770334, transcript variant X2
uncharacterized LOC123770334, transcript variant X3
uncharacterized protein LOC123770334 isoform X1
uncharacterized LOC123770334, transcript variant X4
uncharacterized protein LOC123770334 isoform X2
uncharacterized protein LOC123770334 isoform X3
uncharacterized protein LOC123770334 isoform X4
putative inorganic phosphate cotransporter, transcript variant X2
putative inorganic phosphate cotransporter, transcript variant X1
putative inorganic phosphate cotransporter, transcript variant X3
putative inorganic phosphate cotransporter
cytochrome c oxidase assembly protein COX15 homolog, transcript variant X4
cytochrome c oxidase assembly protein COX15 homolog, transcript variant X3
cytochrome c oxidase assembly protein COX15 homolog, transcript variant X7
cytochrome c oxidase assembly protein COX15 homolog, transcript variant X8
cytochrome c oxidase assembly protein COX15 homolog, transcript variant X1
cytochrome c oxidase assembly protein COX15 homolog, transcript variant X6
cytochrome c oxidase assembly protein COX15 homolog, transcript variant X2
cytochrome c oxidase assembly protein COX15 homolog, transcript variant X5
cytochrome c oxidase assembly protein COX15 homolog
4-hydroxyphenylpyruvate dioxygenase-like, transcript variant X2
4-hydroxyphenylpyruvate dioxygenase-like, transcript variant X1
4-hydroxyphenylpyruvate dioxygenase-like, transcript variant X4
4-hydroxyphenylpyruvate dioxygenase-like, transcript variant X3
4-hydroxyphenylpyruvate dioxygenase-like isoform X1
4-hydroxyphenylpyruvate dioxygenase-like isoform X2
phosphatidylinositol 4-kinase type 2-alpha-like, transcript variant X6
phosphatidylinositol 4-kinase type 2-alpha-like, transcript variant X4
phosphatidylinositol 4-kinase type 2-alpha-like isoform X3
phosphatidylinositol 4-kinase type 2-alpha-like, transcript variant X5
phosphatidylinositol 4-kinase type 2-alpha-like, transcript variant X3
phosphatidylinositol 4-kinase type 2-alpha-like, transcript variant X2
phosphatidylinositol 4-kinase type 2-alpha-like isoform X2
phosphatidylinositol 4-kinase type 2-alpha-like, transcript variant X1
phosphatidylinositol 4-kinase type 2-alpha-like isoform X1
ankyrin repeat domain-containing protein 11-like, transcript variant X2
ankyrin repeat domain-containing protein 11-like, transcript variant X3
ankyrin repeat domain-containing protein 11-like, transcript variant X4
ankyrin repeat domain-containing protein 11-like, transcript variant X1
ankyrin repeat domain-containing protein 11-like, transcript variant X5
ankyrin repeat domain-containing protein 11-like isoform X2
ankyrin repeat domain-containing protein 11-like isoform X1
ankyrin repeat domain-containing protein 11-like isoform X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 51% coverage of the annotated genomic feature by RNAseq alignments
beta-1,4-glucuronyltransferase 1-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
beta-1,4-glucuronyltransferase 1-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
beta-1,4-glucuronyltransferase 1-like isoform X1
beta-1,4-glucuronyltransferase 1-like isoform X2
uncharacterized LOC123770347, transcript variant X3
uncharacterized LOC123770347, transcript variant X1
uncharacterized LOC123770347, transcript variant X2
uncharacterized LOC123770349, transcript variant X3
uncharacterized LOC123770349, transcript variant X5
uncharacterized LOC123770349, transcript variant X2
uncharacterized LOC123770349, transcript variant X4
uncharacterized LOC123770349, transcript variant X7
uncharacterized LOC123770349, transcript variant X6
uncharacterized LOC123770349, transcript variant X1
uncharacterized LOC123770349, transcript variant X8
uncharacterized protein LOC123770349 isoform X1
uncharacterized protein LOC123770349 isoform X2
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA aspartic acid (anticodon GUC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
ATP synthase subunit alpha, mitochondrial-like
twisted gastrulation protein homolog 1-A-like
probable G-protein coupled receptor AH9.1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 63% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: probable G-protein coupled receptor AH9.1
serine/threonine-protein kinase PRP4 homolog
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments
RING finger and CHY zinc finger domain-containing protein 1-like, transcript variant X1
RING finger and CHY zinc finger domain-containing protein 1-like isoform X1
RING finger and CHY zinc finger domain-containing protein 1-like, transcript variant X2
RING finger and CHY zinc finger domain-containing protein 1-like isoform X2
serine/threonine-protein kinase PAK 2-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 11% coverage of the annotated genomic feature by RNAseq alignments
calcium-binding and coiled-coil domain-containing protein 2-like
tyrosine-protein phosphatase Lar-like, transcript variant X1
tyrosine-protein phosphatase Lar-like, transcript variant X3
tyrosine-protein phosphatase Lar-like, transcript variant X4
tyrosine-protein phosphatase Lar-like, transcript variant X6
tyrosine-protein phosphatase Lar-like, transcript variant X7
tyrosine-protein phosphatase Lar-like, transcript variant X2
tyrosine-protein phosphatase Lar-like, transcript variant X5
tyrosine-protein phosphatase Lar-like isoform X1
tyrosine-protein phosphatase Lar-like isoform X3
tyrosine-protein phosphatase Lar-like isoform X4
tyrosine-protein phosphatase Lar-like isoform X6
tyrosine-protein phosphatase Lar-like isoform X7
tyrosine-protein phosphatase Lar-like isoform X2
tyrosine-protein phosphatase Lar-like isoform X5
SHC SH2 domain-binding protein 1-like, transcript variant X2
SHC SH2 domain-binding protein 1-like, transcript variant X3
SHC SH2 domain-binding protein 1-like, transcript variant X1
SHC SH2 domain-binding protein 1-like isoform X1
SHC SH2 domain-binding protein 1-like isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
similar to RNA sequence (same species):INSD:GARH01016240.1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 125 bases not found in genome assembly
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 60 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 45% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 87% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 96% coverage of the annotated genomic feature by RNAseq alignments
sodium/bile acid cotransporter 7-like, transcript variant X1
sodium/bile acid cotransporter 7-like, transcript variant X2
sodium/bile acid cotransporter 7-like isoform X2
sodium/bile acid cotransporter 7-like isoform X1