Procambarus clarkii strain Jiangsu linkage group LG57, ASM2042438v2, whole genome shotgun sequence.
Procambarus clarkii (red swamp crayfish)
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Pleocyemata; Astacidea; Astacoidea; Cambaridae; Procambarus.
A chromosome-level reference genome of red swamp crayfish Procambarus clarkii provides insights into the gene families regarding growth or development in crustaceans
REFSEQ INFORMATION: The reference sequence is identical to\nCM035529.1.\nAssembly name: ASM2042438v2\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Freshwater Fisheries Research\nInstitute of Jiangsu Province, Nanjing 210017, China on 2021/10/12.\nThe original whole-genome shotgun project has the accession\nJAIWQB000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Freshwater Fisheries Research Institute\n of Jiangsu Province, Nanjing 210017,\n China\nAssembly Method :: LACHESIS v. may-2020\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: PacBio RS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Procambarus clarkii Annotation\n Release 100\nAnnotation Version :: 100\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 9.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##
Derived by automated computational analysis using gene prediction method: Gnomon.
WAS/WASL-interacting protein family member 3-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
WAP four-disulfide core domain protein 2-like
COORDINATES: polyA evidence [ECO:0006239]
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 86% coverage of the annotated genomic feature by RNAseq alignments
galactoside alpha-(1,2)-fucosyltransferase 2-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 97% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
uncharacterized LOC123769135, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
uncharacterized LOC123769135, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
uncharacterized LOC123769135, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 35 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA glutamine (anticodon CUG); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
transfer RNA threonine (anticodon CGU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
adhesion G-protein coupled receptor G2-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
adhesion G-protein coupled receptor G2-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
adhesion G-protein coupled receptor G2-like
basic salivary proline-rich protein 3-like
glycine-rich cell wall structural protein 1.8-like
protein unc-13 homolog 4B-like, transcript variant X1
protein unc-13 homolog 4B-like, transcript variant X4
protein unc-13 homolog 4B-like, transcript variant X5
protein unc-13 homolog 4B-like, transcript variant X2
protein unc-13 homolog 4B-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
protein unc-13 homolog 4B-like, transcript variant X6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
protein unc-13 homolog 4B-like isoform X1
protein unc-13 homolog 4B-like isoform X4
protein unc-13 homolog 4B-like isoform X5
protein unc-13 homolog 4B-like isoform X2
protein unc-13 homolog 4B-like isoform X3
protein unc-13 homolog 4B-like isoform X6
protein numb-like, transcript variant X8
protein numb-like, transcript variant X7
protein numb-like, transcript variant X2
protein numb-like, transcript variant X4
protein numb-like, transcript variant X1
protein numb-like, transcript variant X3
protein numb-like, transcript variant X5
protein numb-like, transcript variant X6
putative uncharacterized protein ENSP00000383309
glycine receptor subunit alpha-2-like, transcript variant X2
glycine receptor subunit alpha-2-like, transcript variant X1
glycine receptor subunit alpha-2-like isoform X2
glycine receptor subunit alpha-2-like isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
uncharacterized LOC123769142, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
uncharacterized LOC123769142, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 41 samples with support for all annotated introns
uncharacterized protein LOC123769142 isoform X1
uncharacterized protein LOC123769142 isoform X2
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:12.0:RF00026
2-oxoisovalerate dehydrogenase subunit beta, mitochondrial-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 31 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 97 samples with support for all annotated introns
COORDINATES: nucleotide motif:Rfam:12.0:RF00001
G-protein coupled receptor Mth2-like, transcript variant X2
G-protein coupled receptor Mth2-like, transcript variant X7
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
G-protein coupled receptor Mth2-like, transcript variant X5
G-protein coupled receptor Mth2-like, transcript variant X1
G-protein coupled receptor Mth2-like, transcript variant X6
G-protein coupled receptor Mth2-like, transcript variant X3
G-protein coupled receptor Mth2-like, transcript variant X4
G-protein coupled receptor Mth2-like isoform X2
G-protein coupled receptor Mth2-like isoform X1
uncharacterized protein LOC123769144 isoform X3
dual specificity protein phosphatase 14-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 68 samples with support for all annotated introns
dual specificity protein phosphatase 14-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 58 samples with support for all annotated introns
dual specificity protein phosphatase 14-like isoform X1
dual specificity protein phosphatase 14-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
dual specificity protein phosphatase 14-like isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
serine-aspartate repeat-containing protein I-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 99% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
NF-X1-type zinc finger protein NFXL1-like
DNA-directed RNA polymerase II subunit RPB1-like
potassium voltage-gated channel subfamily KQT member 5-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 96% coverage of the annotated genomic feature by RNAseq alignments
COORDINATES: nucleotide motif:Rfam:12.0:RF00619
uncharacterized LOC123769146, transcript variant X1
uncharacterized LOC123769146, transcript variant X2
uncharacterized LOC123769146, transcript variant X3
cyclin-dependent kinase 17-like, transcript variant X5
cyclin-dependent kinase 17-like, transcript variant X6
cyclin-dependent kinase 17-like, transcript variant X4
cyclin-dependent kinase 17-like isoform X2
cyclin-dependent kinase 17-like, transcript variant X3
cyclin-dependent kinase 17-like, transcript variant X1
cyclin-dependent kinase 17-like, transcript variant X7
cyclin-dependent kinase 17-like, transcript variant X2
cyclin-dependent kinase 17-like isoform X1
cyclin-dependent kinase 17-like isoform X3
zinc finger HIT domain-containing protein 3-like
signal recognition particle receptor subunit beta-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 64% coverage of the annotated genomic feature by RNAseq alignments
putative uncharacterized protein DDB_G0286901
multiple coagulation factor deficiency protein 2 homolog, transcript variant X2
multiple coagulation factor deficiency protein 2 homolog, transcript variant X1
multiple coagulation factor deficiency protein 2 homolog, transcript variant X3
multiple coagulation factor deficiency protein 2 homolog isoform X2
multiple coagulation factor deficiency protein 2 homolog isoform X1
uncharacterized LOC123769150, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 37 samples with support for all annotated introns
uncharacterized LOC123769150, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
uncharacterized LOC123769150, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 64 samples with support for all annotated introns
uncharacterized protein LOC123769150 isoform X2
uncharacterized protein LOC123769150 isoform X1
uncharacterized protein LOC123769150 isoform X3
polycomb protein EED-like, transcript variant X2
polycomb protein EED-like, transcript variant X3
polycomb protein EED-like, transcript variant X1
polycomb protein EED-like, transcript variant X4
sporozoite surface protein 2-like, transcript variant X2
sporozoite surface protein 2-like, transcript variant X1
sporozoite surface protein 2-like isoform X2
sporozoite surface protein 2-like isoform X1
elongation factor-like GTPase 1, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
elongation factor-like GTPase 1 isoform X1
elongation factor-like GTPase 1, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 98 samples with support for all annotated introns
elongation factor-like GTPase 1, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
elongation factor-like GTPase 1 isoform X2
40S ribosomal protein S10-like, transcript variant X1
40S ribosomal protein S10-like, transcript variant X2
40S ribosomal protein S10-like, transcript variant X4
40S ribosomal protein S10-like, transcript variant X3
40S ribosomal protein S10-like, transcript variant X7
40S ribosomal protein S10-like, transcript variant X6
40S ribosomal protein S10-like, transcript variant X5
40S ribosomal protein S10-like, transcript variant X8
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 56 samples with support for all annotated introns
RNA-binding region-containing protein 3-like, transcript variant X6
RNA-binding region-containing protein 3-like, transcript variant X2
RNA-binding region-containing protein 3-like, transcript variant X5
RNA-binding region-containing protein 3-like, transcript variant X3
RNA-binding region-containing protein 3-like, transcript variant X4
RNA-binding region-containing protein 3-like, transcript variant X1
RNA-binding region-containing protein 3-like isoform X1
RNA-binding region-containing protein 3-like, transcript variant X7
RNA-binding region-containing protein 3-like isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 98% coverage of the annotated genomic feature by RNAseq alignments
alanine--glyoxylate aminotransferase 2, mitochondrial-like, transcript variant X2
alanine--glyoxylate aminotransferase 2, mitochondrial-like, transcript variant X1
alanine--glyoxylate aminotransferase 2, mitochondrial-like
protein CIP2A homolog, transcript variant X2
protein CIP2A homolog, transcript variant X1
acid sphingomyelinase-like phosphodiesterase 3b
folylpolyglutamate synthase, mitochondrial-like, transcript variant X1
folylpolyglutamate synthase, mitochondrial-like, transcript variant X2
folylpolyglutamate synthase, mitochondrial-like isoform X1
folylpolyglutamate synthase, mitochondrial-like isoform X2
transfer RNA threonine (anticodon UGU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
adenylate kinase-like, transcript variant X1
adenylate kinase-like, transcript variant X2
plasma membrane calcium-transporting ATPase 2-like
similar to RNA sequence (same species):INSD:GARH01037375.1
annotated by transcript or proteomic data
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 46 bases not found in genome assembly
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins, and 47% coverage of the annotated genomic feature by RNAseq alignments
MOXD1 homolog 1-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
MOXD1 homolog 1-like, transcript variant X3
MOXD1 homolog 1-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 90% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 65 samples with support for all annotated introns
uncharacterized LOC123769175, transcript variant X2
uncharacterized LOC123769175, transcript variant X1
uncharacterized LOC123769175, transcript variant X3
uncharacterized LOC123769175, transcript variant X5
uncharacterized LOC123769175, transcript variant X6
uncharacterized LOC123769175, transcript variant X4
uncharacterized protein LOC123769175 isoform X1
uncharacterized protein LOC123769175 isoform X2
uncharacterized protein LOC123769175 isoform X4
uncharacterized protein LOC123769175 isoform X5
uncharacterized protein LOC123769175 isoform X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
opioid-binding protein/cell adhesion molecule homolog
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
serine/threonine-protein kinase PAK 3-like, transcript variant X1
serine/threonine-protein kinase PAK 3-like, transcript variant X2
serine/threonine-protein kinase PAK 3-like, transcript variant X3
serine/threonine-protein kinase PAK 3-like isoform X1
serine/threonine-protein kinase PAK 3-like isoform X2
serine/threonine-protein kinase PAK 3-like isoform X3
serine/threonine-protein kinase PAK 2-like, transcript variant X1
serine/threonine-protein kinase PAK 2-like, transcript variant X2
serine/threonine-protein kinase PAK 2-like
similar to RNA sequence (same species):INSD:GBEV01080462.1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 277 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 87% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 111 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
mediator of RNA polymerase II transcription subunit 25-like, transcript variant X2
mediator of RNA polymerase II transcription subunit 25-like, transcript variant X5
mediator of RNA polymerase II transcription subunit 25-like, transcript variant X1
mediator of RNA polymerase II transcription subunit 25-like, transcript variant X4
mediator of RNA polymerase II transcription subunit 25-like, transcript variant X3
mediator of RNA polymerase II transcription subunit 25-like isoform X4
mediator of RNA polymerase II transcription subunit 25-like isoform X1
mediator of RNA polymerase II transcription subunit 25-like isoform X2
mediator of RNA polymerase II transcription subunit 25-like isoform X5
mediator of RNA polymerase II transcription subunit 25-like isoform X3
uncharacterized LOC123769180, transcript variant X2
uncharacterized LOC123769180, transcript variant X1
uncharacterized protein LOC123769180 isoform X2
uncharacterized protein LOC123769180 isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 28% coverage of the annotated genomic feature by RNAseq alignments
E3 ubiquitin-protein ligase ZNRF1-like, transcript variant X3
E3 ubiquitin-protein ligase ZNRF1-like, transcript variant X4
E3 ubiquitin-protein ligase ZNRF1-like, transcript variant X1
E3 ubiquitin-protein ligase ZNRF1-like, transcript variant X2
E3 ubiquitin-protein ligase ZNRF1-like isoform X2
E3 ubiquitin-protein ligase ZNRF1-like isoform X1
intraflagellar transport protein 52 homolog
sorting nexin-25-like, transcript variant X1
sorting nexin-25-like, transcript variant X2
probable 28S ribosomal protein S26, mitochondrial
similar to RNA sequence (same species):INSD:GBEV01003616.1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 1571 bases not found in genome assembly
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 1345 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC123769188, transcript variant X4
uncharacterized LOC123769188, transcript variant X3
uncharacterized LOC123769188, transcript variant X2
uncharacterized LOC123769188, transcript variant X1
leucine-rich repeat extensin-like protein 3
facilitated trehalose transporter Tret1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
serine/arginine repetitive matrix protein 1-like
similar to RNA sequence (same species):INSD:GBEV01022641.1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 1107 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 571 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
condensin-2 complex subunit G2-like, transcript variant X2
condensin-2 complex subunit G2-like, transcript variant X7
condensin-2 complex subunit G2-like, transcript variant X4
condensin-2 complex subunit G2-like, transcript variant X6
condensin-2 complex subunit G2-like, transcript variant X5
condensin-2 complex subunit G2-like, transcript variant X1
condensin-2 complex subunit G2-like, transcript variant X3
condensin-2 complex subunit G2-like isoform X5
condensin-2 complex subunit G2-like isoform X2
condensin-2 complex subunit G2-like isoform X4
condensin-2 complex subunit G2-like isoform X3
condensin-2 complex subunit G2-like isoform X1
condensin-2 complex subunit G2-like, transcript variant X8
condensin-2 complex subunit G2-like isoform X6
similar to RNA sequence (same species):INSD:GARH01039370.1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 904 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 39 samples with support for all annotated introns
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 184 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
tyrosine kinase receptor Cad96Ca-like, transcript variant X1
tyrosine kinase receptor Cad96Ca-like, transcript variant X2
dehydrogenase/reductase SDR family member 12-like
UDP-N-acetylglucosamine transferase subunit ALG13 homolog
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins
EF-hand calcium-binding domain-containing protein 7-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 75 samples with support for all annotated introns
copper-transporting ATPase 1-like, transcript variant X3
copper-transporting ATPase 1-like, transcript variant X1
copper-transporting ATPase 1-like, transcript variant X6
copper-transporting ATPase 1-like, transcript variant X5
copper-transporting ATPase 1-like, transcript variant X4
classical arabinogalactan protein 9-like
copper-transporting ATPase 1-like, transcript variant X2
copper-transporting ATPase 1-like isoform X2
copper-transporting ATPase 1-like isoform X1
unconventional myosin-X-like, transcript variant X1
unconventional myosin-X-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
G1/S-specific cyclin-E-like, transcript variant X2
G1/S-specific cyclin-E-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
AP-2 complex subunit mu, transcript variant X1
AP-2 complex subunit mu, transcript variant X2
innexin inx2-like, transcript variant X4
innexin inx2-like, transcript variant X6
innexin inx2-like, transcript variant X1
innexin inx2-like, transcript variant X3
innexin inx2-like, transcript variant X2
innexin inx2-like, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
innexin inx3-like, transcript variant X5
innexin inx3-like, transcript variant X3
innexin inx3-like, transcript variant X4
innexin inx3-like, transcript variant X7
innexin inx3-like, transcript variant X6
innexin inx3-like, transcript variant X10
innexin inx3-like, transcript variant X8
innexin inx3-like, transcript variant X9
innexin inx3-like, transcript variant X1
innexin inx3-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 62 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 55 samples with support for all annotated introns
probable cytosolic iron-sulfur protein assembly protein CIAO1, transcript variant X1
probable cytosolic iron-sulfur protein assembly protein CIAO1, transcript variant X2
probable cytosolic iron-sulfur protein assembly protein CIAO1, transcript variant X3
probable cytosolic iron-sulfur protein assembly protein CIAO1 isoform X2
thioredoxin domain-containing protein 6-like
sulfide:quinone oxidoreductase, mitochondrial-like, transcript variant X3
sulfide:quinone oxidoreductase, mitochondrial-like, transcript variant X2
sulfide:quinone oxidoreductase, mitochondrial-like, transcript variant X1
sulfide:quinone oxidoreductase, mitochondrial-like, transcript variant X4
sulfide:quinone oxidoreductase, mitochondrial-like isoform X2
sulfide:quinone oxidoreductase, mitochondrial-like isoform X1
transcriptional adapter 1-like, transcript variant X1
transcriptional adapter 1-like, transcript variant X2
transcriptional adapter 1-like, transcript variant X3
transcriptional adapter 1-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
adenosine 3'-phospho 5'-phosphosulfate transporter 1-like, transcript variant X3
adenosine 3'-phospho 5'-phosphosulfate transporter 1-like, transcript variant X2
adenosine 3'-phospho 5'-phosphosulfate transporter 1-like, transcript variant X1
adenosine 3'-phospho 5'-phosphosulfate transporter 1-like
cofilin/actin-depolymerizing factor homolog
putative glycerol kinase 5, transcript variant X3
putative glycerol kinase 5, transcript variant X5
putative glycerol kinase 5, transcript variant X1
putative glycerol kinase 5, transcript variant X6
putative glycerol kinase 5, transcript variant X2
putative glycerol kinase 5, transcript variant X4
putative glycerol kinase 5, transcript variant X7
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns
probable methyltransferase-like protein 15 homolog
ubiquinol-cytochrome-c reductase complex assembly factor 2-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 110 samples with support for all annotated introns
transmembrane emp24 domain-containing protein 5-like
hrp65 protein-like, transcript variant X6
hrp65 protein-like, transcript variant X7
hrp65 protein-like, transcript variant X5
hrp65 protein-like, transcript variant X3
hrp65 protein-like, transcript variant X8
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 45 samples with support for all annotated introns
hrp65 protein-like, transcript variant X4
hrp65 protein-like, transcript variant X2
hrp65 protein-like, transcript variant X1
GPI transamidase component PIG-S-like, transcript variant X1
GPI transamidase component PIG-S-like, transcript variant X2
GPI transamidase component PIG-S-like, transcript variant X4
GPI transamidase component PIG-S-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 40 samples with support for all annotated introns
mitochondrial amidoxime-reducing component 1-like, transcript variant X2
mitochondrial amidoxime-reducing component 1-like, transcript variant X3
mitochondrial amidoxime-reducing component 1-like, transcript variant X4
mitochondrial amidoxime-reducing component 1-like, transcript variant X1
mitochondrial amidoxime-reducing component 1-like
solute carrier family 35 member C2-like, transcript variant X1
solute carrier family 35 member C2-like, transcript variant X2
solute carrier family 35 member C2-like, transcript variant X3
solute carrier family 35 member C2-like, transcript variant X11
solute carrier family 35 member C2-like, transcript variant X10
solute carrier family 35 member C2-like, transcript variant X7
solute carrier family 35 member C2-like, transcript variant X4
solute carrier family 35 member C2-like, transcript variant X5
solute carrier family 35 member C2-like isoform X1
solute carrier family 35 member C2-like isoform X3
solute carrier family 35 member C2-like, transcript variant X8
solute carrier family 35 member C2-like isoform X4
solute carrier family 35 member C2-like, transcript variant X12
solute carrier family 35 member C2-like isoform X6
solute carrier family 35 member C2-like, transcript variant X9
solute carrier family 35 member C2-like isoform X5
solute carrier family 35 member C2-like, transcript variant X6
solute carrier family 35 member C2-like isoform X2
solute carrier family 35 member C2-like isoform X7
uncharacterized LOC123769249, transcript variant X3
uncharacterized LOC123769249, transcript variant X4
uncharacterized LOC123769249, transcript variant X1
uncharacterized LOC123769249, transcript variant X2
lissencephaly-1 homolog, transcript variant X2
lissencephaly-1 homolog, transcript variant X3
lissencephaly-1 homolog, transcript variant X1
lissencephaly-1 homolog, transcript variant X4
sesquipedalian-1-like, transcript variant X4
sesquipedalian-1-like, transcript variant X1
sesquipedalian-1-like, transcript variant X3
sesquipedalian-1-like, transcript variant X2
39S ribosomal protein L34, mitochondrial-like
3'(2'),5'-bisphosphate nucleotidase 1-like, transcript variant X3
3'(2'),5'-bisphosphate nucleotidase 1-like, transcript variant X2
3'(2'),5'-bisphosphate nucleotidase 1-like, transcript variant X8
3'(2'),5'-bisphosphate nucleotidase 1-like, transcript variant X6
3'(2'),5'-bisphosphate nucleotidase 1-like, transcript variant X7
3'(2'),5'-bisphosphate nucleotidase 1-like, transcript variant X4
3'(2'),5'-bisphosphate nucleotidase 1-like, transcript variant X5
3'(2'),5'-bisphosphate nucleotidase 1-like, transcript variant X1
3'(2'),5'-bisphosphate nucleotidase 1-like
basic salivary proline-rich protein 1-like
3-oxo-5-alpha-steroid 4-dehydrogenase 1-like
transfer RNA histidin (anticodon GUG); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
protein N-terminal glutamine amidohydrolase-like, transcript variant X1
protein N-terminal glutamine amidohydrolase-like, transcript variant X6
protein N-terminal glutamine amidohydrolase-like, transcript variant X5
protein N-terminal glutamine amidohydrolase-like, transcript variant X4
protein N-terminal glutamine amidohydrolase-like, transcript variant X2
protein N-terminal glutamine amidohydrolase-like, transcript variant X3
protein N-terminal glutamine amidohydrolase-like isoform X1
protein N-terminal glutamine amidohydrolase-like isoform X3
protein N-terminal glutamine amidohydrolase-like isoform X2
glutamate receptor ionotropic, kainate 4-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 52% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized LOC123769261, transcript variant X2
uncharacterized LOC123769261, transcript variant X1
facilitated trehalose transporter Tret1-2 homolog
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 30% coverage of the annotated genomic feature by RNAseq alignments
similar to RNA sequence (same species):INSD:GARH01000965.1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 145 bases not found in genome assembly
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 145 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
forkhead box protein K2-like, transcript variant X2
forkhead box protein K2-like, transcript variant X1
ubiquinone biosynthesis protein COQ9, mitochondrial-like, transcript variant X2
ubiquinone biosynthesis protein COQ9, mitochondrial-like isoform X2
ubiquinone biosynthesis protein COQ9, mitochondrial-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 75 samples with support for all annotated introns
ATP synthase subunit d, mitochondrial-like
nuclear pore complex protein Nup214-like, transcript variant X2
nuclear pore complex protein Nup214-like, transcript variant X1
nuclear pore complex protein Nup214-like
probable helicase with zinc finger domain, transcript variant X1
probable helicase with zinc finger domain, transcript variant X2
probable helicase with zinc finger domain isoform X1
probable helicase with zinc finger domain isoform X2
cytosolic carboxypeptidase-like protein 5
similar to RNA sequence (same species):INSD:GARH01008177.1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 341 bases not found in genome assembly
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 336 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
eukaryotic translation initiation factor 3 subunit A-like
tetratricopeptide repeat protein 33-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 98 samples with support for all annotated introns
tetratricopeptide repeat protein 33-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
tetratricopeptide repeat protein 33-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 38 samples with support for all annotated introns
tetratricopeptide repeat protein 33-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 41 samples with support for all annotated introns
tetratricopeptide repeat protein 33-like isoform X1
tetratricopeptide repeat protein 33-like, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
tetratricopeptide repeat protein 33-like isoform X2
uncharacterized LOC123769277, transcript variant X1
uncharacterized LOC123769277, transcript variant X2
uncharacterized LOC123769277, transcript variant X3
uncharacterized protein LOC123769277 isoform X1
uncharacterized protein LOC123769277 isoform X2
AT-rich interactive domain-containing protein 2-like, transcript variant X1
AT-rich interactive domain-containing protein 2-like, transcript variant X3
AT-rich interactive domain-containing protein 2-like, transcript variant X2
AT-rich interactive domain-containing protein 2-like isoform X3
AT-rich interactive domain-containing protein 2-like isoform X2
AT-rich interactive domain-containing protein 2-like isoform X1
uncharacterized LOC123769279, transcript variant X1
uncharacterized LOC123769279, transcript variant X2
uncharacterized protein LOC123769279 isoform X1
uncharacterized protein LOC123769279 isoform X2
sialic acid synthase-like, transcript variant X2
sialic acid synthase-like, transcript variant X3
sialic acid synthase-like, transcript variant X1
transforming acidic coiled-coil-containing protein 3-like, transcript variant X2
transforming acidic coiled-coil-containing protein 3-like, transcript variant X7
transforming acidic coiled-coil-containing protein 3-like, transcript variant X1
transforming acidic coiled-coil-containing protein 3-like, transcript variant X4
transforming acidic coiled-coil-containing protein 3-like, transcript variant X9
transforming acidic coiled-coil-containing protein 3-like, transcript variant X5
transforming acidic coiled-coil-containing protein 3-like, transcript variant X8
transforming acidic coiled-coil-containing protein 3-like, transcript variant X3
transforming acidic coiled-coil-containing protein 3-like, transcript variant X6
transforming acidic coiled-coil-containing protein 3-like, transcript variant X10
transforming acidic coiled-coil-containing protein 3-like isoform X10
heparan sulfate 2-O-sulfotransferase 1-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 47 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
heparan sulfate 2-O-sulfotransferase 1-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 47 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 31 samples with support for all annotated introns
heparan sulfate 2-O-sulfotransferase 1-like
uncharacterized LOC123769290, transcript variant X3
uncharacterized LOC123769290, transcript variant X1
uncharacterized LOC123769290, transcript variant X2
uncharacterized protein LOC123769290 isoform X2
uncharacterized protein LOC123769290 isoform X1
GATA zinc finger domain-containing protein 14-like
cAMP-specific 3',5'-cyclic phosphodiesterase-like, transcript variant X1
cAMP-specific 3',5'-cyclic phosphodiesterase 4C-like isoform X1
cAMP-specific 3',5'-cyclic phosphodiesterase-like, transcript variant X3
cAMP-specific 3',5'-cyclic phosphodiesterase-like isoform X3
cAMP-specific 3',5'-cyclic phosphodiesterase-like, transcript variant X2
cAMP-specific 3',5'-cyclic phosphodiesterase 4C-like isoform X2
uncharacterized LOC123769292, transcript variant X1
uncharacterized LOC123769292, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
uncharacterized protein LOC123769292 isoform X2
uncharacterized protein LOC123769292 isoform X1
repetitive proline-rich cell wall protein 2-like
leucine-rich repeat extensin-like protein 5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 90% coverage of the annotated genomic feature by RNAseq alignments
paternally-expressed gene 3 protein-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 99% coverage of the annotated genomic feature by RNAseq alignments
proline-rich protein HaeIII subfamily 1-like